|
Homology
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A6H5KTE1_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTE1_9PHAE) HSP 1 Score: 431 bits (1108), Expect = 1.060e-144 Identity = 225/274 (82.12%), Postives = 249/274 (90.88%), Query Frame = 2 Query: 326 MKLLHLLCVAGAMA-TARGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPGVTFLKGDATDPDVLAKVISDG--NFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGG-EQRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASSYESNK 1135
M+LL LL + TA LAP ILVLGGTGFIGSTVSRIA+D+GC+VTSLSRRGTPSPDSD +PGV FLKGDATDP V+ +VI+DG ++DGVVHAVGMLFAGSLNR+ASGSGSVP+PGTTYDKITRQTAFAATAAL+ LA+GG +QRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRA EDELLNNKPSLRG+VLRPSLVWTK+RP AL VAAFQ+GSRLGLPFIDRPV+VETLA+AAVEALFDSSVRGVQDWR M+KLA SY++NK
Sbjct: 1 MQLLTLLIALAVVGDTAMALAPKILVLGGTGFIGSTVSRIAVDSGCEVTSLSRRGTPSPDSDPLPGVNFLKGDATDPAVVRQVINDGKCDYDGVVHAVGMLFAGSLNRFASGSGSVPDPGTTYDKITRQTAFAATAALDALAQGGSQQRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAVEDELLNNKPSLRGVVLRPSLVWTKRRPGALLPVAAFQIGSRLGLPFIDRPVHVETLASAAVEALFDSSVRGVQDWRGMEKLAGSYKANK 274
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A835YPV7_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV7_9STRA) HSP 1 Score: 279 bits (713), Expect = 1.240e-85 Identity = 153/281 (54.45%), Postives = 200/281 (71.17%), Query Frame = 2 Query: 281 LFLLPLPATSKPLVRMKLLHLLCVAGAMATARGLAPN-ILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGGEQ-RPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLAS 1117
L L+P A P+ + LHL MAT+ LA N +LVLGGTGF+G T+++ A++ G VTSLSRRG D + T+L+GDA+D +A+V+ +G FD VVHA+GML SLNR+ASGSGSVP G TYD++TRQT FAA A+ + G+ PFVF+SAAEA W D +FEG+P+ FL YLVAKRAAE+ LL++ +LR VLRPSLVWTK+RPAALPAV+AF + +G+PFIDRPV+V TLA AAVEAL D+S G Q+++ M++LA+
Sbjct: 2 LLLVPAFALVSPVQQ---LHLPAALHMMATSSSLAANRLLVLGGTGFVGGTIAQEAVNRGYSVTSLSRRGRLDDADDRI---TWLEGDASDAGTVARVVQEGEFDAVVHAIGMLLDNSLNRFASGSGSVPGEGATYDQVTRQTVFAAADAVVSNRKAGQPPTPFVFVSAAEAAWTKDALFEGTPLAFLRRYLVAKRAAEERLLSDARNLRATVLRPSLVWTKERPAALPAVSAFTAANAIGIPFIDRPVSVTTLAAAAVEALEDASCSGTQNYKGMERLAA 276
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: L1I751_GUITC (Epimerase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I751_GUITC) HSP 1 Score: 233 bits (594), Expect = 2.770e-68 Identity = 126/251 (50.20%), Postives = 170/251 (67.73%), Query Frame = 2 Query: 389 NILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPS--PDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAF-AATAALEDLARGGEQRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPS---LRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASSY 1123
ILVLGGTGF+GS V+++AI+ G +V +LSRRG P+ S + + KGDAT + KV+ +G F VVHA+GMLF LN+YASGSGSVP G+TYD+ITRQTAF A AA + + PF F+SAAE +W FD FEG+P+ +L YL+AKRA E EL++ + L+ I++RPSL+WT RP AL VAAF G+RLGLPF+D+PV V TL+ A ++ L S +GV ++ M++LA +
Sbjct: 17 KILVLGGTGFVGSNVAQLAIERGYEVVALSRRGEPTGASRSGAASKIAWRKGDATKKADIEKVMEEGGFTAVVHAIGMLFETELNKYASGSGSVPRAGSTYDEITRQTAFNAMEAAASSSSASSDPIPFAFVSAAEVRWTFDKSFEGTPLDWLRRYLIAKRAVESELIDVYGAGGLLKPIIVRPSLIWTWDRPGALLPVAAFTFGNRLGLPFVDKPVQVSTLSKAILKGLESKSEKGVYNFEGMERLAKEF 267
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A7S0QX38_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX38_9CHLO) HSP 1 Score: 235 bits (600), Expect = 2.890e-68 Identity = 142/283 (50.18%), Postives = 181/283 (63.96%), Query Frame = 2 Query: 293 PLPATSKPLVRMKLLHLLCVAGAMATARGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPGVTFLKGDAT-DPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGGEQR---PFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNN---KPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASS 1120
P P PLV+ L + A + ILVLGGTG++GS V RIA+ G V S+SRRG SD + GV + KGD DP ++A ++S+G FDGV+HA+GML N++ASGSGSVP PG+TYD++TRQTA AA +A G + PFVF+SAAEA W D PV FL YL AKRA EDELLNN R ++LRPSLV++ R A+LPAV AF LG+ L LP IDRPV VETLA AA++A+ D SV GVQ++ +M+ LA++
Sbjct: 59 PKPMCPTPLVKKSSSKLRATSKAAEAPS--SKKILVLGGTGYVGSEVCRIALSRGYSVVSVSRRGLVE-GSDQLKGVDWRKGDVVADPAIVAHILSEGGFDGVMHAIGMLLESDANKFASGSGSVPTPGSTYDQVTRQTALAAASAFSAACEGTDASSPPPFVFVSAAEAGWTQD-----PPVPFLVSYLKAKRAVEDELLNNYGASNKFRPVILRPSLVYSMDRTASLPAVGAFFLGNMLKLPGIDRPVLVETLAKAALKAMEDESVAGVQNFEAMEDLAAA 333
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: C1E365_MICCC (Epimerase domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E365_MICCC) HSP 1 Score: 210 bits (535), Expect = 4.510e-59 Identity = 129/274 (47.08%), Postives = 162/274 (59.12%), Query Frame = 2 Query: 365 ATARGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPG-----VTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAF-AATAALE--------DLARGGEQR--------PFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDEL--LNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLA 1114
A + G +LVLGGTGFIGS + A+ +G V S+SRRG P D P V + KGD PD +A V+ +G F +HAVGML A +N ASGSGS P+PG TYD +TR TA AA AA D A GG PFVF+SAAEA+W F +PV +L DYL+AKRA E L + + +R LRPSLV+ +PAA+PAV AF LG+ LGLPF+DRPV V+TLA+AAV + D G D+R M++LA
Sbjct: 43 AGSGGTKGKLLVLGGTGFIGSKICERALSSGYDVVSISRRGDPPGDPHRYPDGVWNRVDWRKGDCVQPDTIATVLGEGGFVACIHAVGMLLASDINALASGSGSKPSPGATYDDVTRVTALNAADAAARLCTAVPNADTAGGGGTGGTTSKAPVPFVFVSAAEARWTFK-----APVAWLEDYLIAKRAVEARLREMTDAGEVRAACLRPSLVYCLDKPAAMPAVGAFYLGNLLGLPFVDRPVTVDTLASAAVRCVEDGRSTGALDYREMERLA 311
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: C1N367_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N367_MICPC) HSP 1 Score: 208 bits (530), Expect = 3.880e-58 Identity = 122/272 (44.85%), Postives = 166/272 (61.03%), Query Frame = 2 Query: 389 NILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPS-----PDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLAR----------------GGEQRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDEL--LNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASSYESNK 1135
+LVLGGTGF+G V A++ G V S+SRRG PS P S V + GD T P + V+++G F G VHAVGML A LN YASGSGSVP+ G+TYD +TR++AF A A+ +L + PFVF+SAAEAKW F +PV +L +YLVAKRA E++L + +LR +LRPSLV+ +PA+ PAVAAF +G+ +GLPF+DRPV LATAAV A+ + +V G+ D+ +++L+ N+
Sbjct: 60 KLLVLGGTGFVGGNVIERALEGGYSVVSISRRGAPSASARGPTSSLDGRVDWRVGDVTLPSTVRDVLAEGGFVGCVHAVGMLLASDLNAYASGSGSVPSAGSTYDDVTRKSAFHAADAVAELVKPVDFTSASDGTRIYTTSKRSPPFVFVSAAEAKWDFR-----APVEWLEEYLVAKRAVEEKLGAMTAAGALRATILRPSLVYAFDKPASFPAVAAFVIGNAIGLPFVDRPVTAGALATAAVRAVKEEAVEGILDYVGIEELSCDASFNE 326
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A1Z5JSM0_FISSO (Epimerase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSM0_FISSO) HSP 1 Score: 189 bits (479), Expect = 3.930e-51 Identity = 115/256 (44.92%), Postives = 158/256 (61.72%), Query Frame = 2 Query: 389 NILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPGVTFLKGDATDPDVLAKVISDG-NFDGVVHAVGMLF-----AGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGG--EQRPFVFISAAEAKW----GFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASS 1120
+LVLGGTGF+G V A+ G V SLSRRG P S V V + +GDA +A + + NF GVVH +G+LF GSLN Y SGSGS+P+ +TY+ ITRQTAF A + A +Q PF F SAAEA W G D I FL YLVAKRA E +LL+++P+LR I++RPSL+++ RP + P V AF +G+++GLPF+DRPV V+ L+ A V+A+ V+G+ ++ + ++SS
Sbjct: 52 KLLVLGGTGFLGQNVCEQALQAGYDVVSLSRRGLPP--SGGVSNVDYRQGDARLKASVANIFGESSNFAGVVHCIGLLFDDQSGLGSLNVYVSGSGSLPDAASTYETITRQTAFNAIEVATEYANKNALQQFPFCFTSAAEAGWPDVAGGDLIENYLAPDFLKRYLVAKRAVEAKLLSSEPTLRPIIVRPSLIYSMDRPLSFPPVGAFFVGNKVGLPFVDRPVTVQNLSNAMVKAIARDDVKGLLRYQQIDDISSS 305
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A7S3QJZ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJZ9_9STRA) HSP 1 Score: 182 bits (463), Expect = 9.360e-49 Identity = 112/261 (42.91%), Postives = 161/261 (61.69%), Query Frame = 2 Query: 374 RGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSD--TVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAG-----SLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLA--RGGEQRPFVFISAAEAKW----GFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSL-RGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLA 1114
+G ILVLGG+GF+G T+++ A G VTSLSRRG P D T + + GDA + V+ ++ +G++ + H +G+L G S NR+ SGSGSVP TYD+ITR TAF A AA E RGG PF+F SAAEA W G + +L YL AKR+ E+ L+N+ +L R ++ RPSL+++ + A+LP AF +G+R+GLPF+DRPV+V+TL+TAAV ++ VRGVQ ++ + +L+
Sbjct: 53 KGNKGKILVLGGSGFLGGTIAQRAALEGYSVTSLSRRGKPEKDPKDFTNDKIDYRIGDARESLVIENILDEGDYTAIFHCIGILLDGDSGLRSFNRFVSGSGSVPEENATYDEITRLTAFNAIAAAESYVSKRGGGPLPFIFTSAAEAGWPDVRGGKFVERTLTPRWLKRYLEAKRSVENRLMNSPQTLLRPVIFRPSLIYSLDKIASLPPWGAFFVGNRVGLPFVDRPVSVQTLSTAAVRSI-SKEVRGVQRFKEIDQLS 312
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A1Q9D6C4_SYMMI (NAD(P)-bd_dom domain-containing protein n=6 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D6C4_SYMMI) HSP 1 Score: 176 bits (447), Expect = 3.270e-46 Identity = 118/294 (40.14%), Postives = 165/294 (56.12%), Query Frame = 2 Query: 284 FLLPLPATSKPLVRMKLLHLLCVAGAMATAR---GLAPN----ILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRG-TPSPDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLF-----AGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARG--GEQRPFVFISAAEAKWGFDGI---FEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKL 1111
+LL LP T + ++ TAR G P+ +LVLGG G++G V R+A+ G QVTSLSRRG P P + + V ++KG+A D + V+ G D VVHA+G+LF +LN SGSGS P+ +TYDKITRQTAF A++ R P +F+SAAEA W + E +L +YLVAKRA E EL ++ ++R + RPSL+W+ + LP + F L + +G+PF+D+ V V TL+ A V AL D V GVQ +R M++L
Sbjct: 41 WLLQLPTTKDVASNLVFVNTQAPVTRPVTARAAEGEEPSAGKRLLVLGGNGYVGREVCRLAVQRGFQVTSLSRRGENPEPGNAELDQVKWVKGNAADSSTVQNVV--GEADAVVHAIGLLFDVNSGLTNLNLVVSGSGSTPDDTSTYDKITRQTAFNVINAIKGRIRMPFSPPMPMMFVSAAEAGWPDVALGPEVEKVAPAWLKEYLVAKRAVEGELASSTDTIRSAIFRPSLIWSWTKFDVLPVIPVFNLLNAVGVPFVDKTVTVFTLSKAIVAALEDEGVAGVQRFREMEEL 332
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A7R9UDT9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDT9_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.170e-45 Identity = 122/286 (42.66%), Postives = 162/286 (56.64%), Query Frame = 2 Query: 332 LLHLLCVAGAMATARGLAP-----------NILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRG-TPSPDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLF-----AGSLNRYASGSGSVPNPGTTYDKITRQTAFAA---TAALEDLARGGEQRPFVFISAAEAKWG---FDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPS-LRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLAS 1117
LL L AGA+ T R AP +LVLGGTGF+GS V AI G VT+LSRRG P PD + V +L DAT+ L K++S+ + D VVHAVG+LF +LN SGS SVP +TYD ITRQTA A T + + + ++R FVF+SAAEA W E +L YL AKR+ E LLN + + R ++ RPSL+WT + LP + F + S +GLPF+D+ V VE LA A VEA SV G+Q ++ +++L+S
Sbjct: 21 LLPSLSFAGALLTPRLAAPAGGREALAIKKKMLVLGGTGFVGSRVCEEAIKKGYAVTALSRRGQNPKPDDAQLSQVNWLTCDATEEAQLGKIMSEVDPDVVVHAVGLLFDIDSGLANLNLVVSGSKSVPGEKSTYDAITRQTAENALKNTISPRNPLKSLKKRTFVFVSAAEAGWPEVPLGDRVESLAPEWLVRYLGAKRSVEASLLNAQSNNFRPVIFRPSLIWTWSKLDVLPVIPVFNIASAIGLPFVDKTVRVEDLAAAIVEAAGTESVSGIQRFKEVEELSS 306
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 440.7 |
Seed ortholog evalue | 5.7e-121 |
Seed eggNOG ortholog | 2880.D8LJU3 |
Hectar predicted targeting category | signal peptide |
GOs | GO:0003674,GO:0003824,GO:0003954,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006732,GO:0006733,GO:0006743,GO:0006744,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009987,GO:0016491,GO:0016651,GO:0042180,GO:0042181,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0051186,GO:0051188,GO:0055114,GO:0071704,GO:1901004,GO:1901006,GO:1901576,GO:1901661,GO:1901663 |
EggNOG free text desc. | ubiquinone-6 biosynthetic process |
EggNOG OGs | COG0702@1,KOG4288@2759 |
Ec32 ortholog description | NAD(P)-binding domain |
Ec32 ortholog | Ec-23_000150.1 |
COG Functional cat. | GM |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
Exons | 6 |
Model size | 1977 |
Cds size | 906 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930842.8036547-UTR-C-linearis_contig98:467902..468227 | 1622930842.8036547-UTR-C-linearis_contig98:467902..468227 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig98 467903..468227 + |
1690881277.9862561-UTR-C-linearis_contig98:467902..468227 | 1690881277.9862561-UTR-C-linearis_contig98:467902..468227 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig98 467903..468227 + |
1622930842.9297915-UTR-C-linearis_contig98:473212..473958 | 1622930842.9297915-UTR-C-linearis_contig98:473212..473958 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig98 473213..473958 + |
1690881278.0629592-UTR-C-linearis_contig98:473212..473958 | 1690881278.0629592-UTR-C-linearis_contig98:473212..473958 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig98 473213..473958 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930842.8157763-CDS-C-linearis_contig98:468227..468365 | 1622930842.8157763-CDS-C-linearis_contig98:468227..468365 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 468228..468365 + |
1690881277.999174-CDS-C-linearis_contig98:468227..468365 | 1690881277.999174-CDS-C-linearis_contig98:468227..468365 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 468228..468365 + |
1622930842.8323312-CDS-C-linearis_contig98:470095..470213 | 1622930842.8323312-CDS-C-linearis_contig98:470095..470213 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 470096..470213 + |
1690881278.0080724-CDS-C-linearis_contig98:470095..470213 | 1690881278.0080724-CDS-C-linearis_contig98:470095..470213 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 470096..470213 + |
1622930842.853713-CDS-C-linearis_contig98:470461..470637 | 1622930842.853713-CDS-C-linearis_contig98:470461..470637 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 470462..470637 + |
1690881278.0183947-CDS-C-linearis_contig98:470461..470637 | 1690881278.0183947-CDS-C-linearis_contig98:470461..470637 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 470462..470637 + |
1622930842.8720803-CDS-C-linearis_contig98:471481..471601 | 1622930842.8720803-CDS-C-linearis_contig98:471481..471601 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 471482..471601 + |
1690881278.0272532-CDS-C-linearis_contig98:471481..471601 | 1690881278.0272532-CDS-C-linearis_contig98:471481..471601 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 471482..471601 + |
1622930842.8895543-CDS-C-linearis_contig98:472099..472209 | 1622930842.8895543-CDS-C-linearis_contig98:472099..472209 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 472100..472209 + |
1690881278.0400379-CDS-C-linearis_contig98:472099..472209 | 1690881278.0400379-CDS-C-linearis_contig98:472099..472209 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 472100..472209 + |
1622930842.9060705-CDS-C-linearis_contig98:472968..473212 | 1622930842.9060705-CDS-C-linearis_contig98:472968..473212 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 472969..473212 + |
1690881278.0502625-CDS-C-linearis_contig98:472968..473212 | 1690881278.0502625-CDS-C-linearis_contig98:472968..473212 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig98 472969..473212 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17132.1 >prot_C-linearis_contig98.17132.1 ID=prot_C-linearis_contig98.17132.1|Name=mRNA_C-linearis_contig98.17132.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp
MKLLHLLCVAGAMATARGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSL SRRGTPSPDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFA GSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGGEQRPFVFI SAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPS LVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSV RGVQDWRSMQKLASSYESNKPSRATAAAAAAASASSTAEISGDGSACREG L* back to topmRNA from alignment at C-linearis_contig98:467903..473958+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig98.17132.1 ID=mRNA_C-linearis_contig98.17132.1|Name=mRNA_C-linearis_contig98.17132.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6056bp|location=Sequence derived from alignment at C-linearis_contig98:467903..473958+ (Chordaria linearis ClinC8C monoicous) ATTGTTGCAACGCTCAGAGCACGAAGTGGTCACGAGCTGGAGAGGGGAGG
CTCGAGCACACTGCTCCACCTCTACGCCTTCGAGGATCGGTTGCAACGGG
TTGCCGATACGACAGCTCCCCTAGAGCCCTCTGTATTATATCTACAGAGT
ATCTCTTTTTGCTTTTTTGCGAGTTCGGGGGTCTCCTCCTCTTCGAGCTT
GGGAACGGCGGTGTACAGCAGTATTCGCAGAAAAACGCGGTGGTAGGTGG
TAGGTAGGTAGGTGTTACGCCGCTTTTTTTCTTTTTTTGCTTCCGCTGCC
CGCGACCTCAAAACCCCTTGTCCGGATGAAGCTTCTTCATCTGCTCTGCG
TAGCAGGGGCGATGGCAACTGCTCGAGGACTGGCGCCTAACATCCTGGTG
CTCGGCGGTACGGGATTCATTGGTTCCACCGTATCGCGCATCGCCATAGA
TAACGGATGTCAGGCAAGAAGAGCGGTGATTTTGTGATTTTGGGCTGAGG
TGTGTCAGTGCGAGATCATGATGCCTATCCAGTCAGCTCTGAAATTGACT
TCTACACGGGGCGAAGGGAGAGAGGGATTGGGGATCAAGCAAGATAGGAT
GCCGTTGCCAATAATGAGGCGAAGATAGCTGCAGTGTTCATGAGCGTCAC
GCACAACACTCCACCAACCCGCAACCGGCACGACGGTAGCATTGGGGAAA
ACACACACAAGCGCACTTTTTGGCTTTTTGGCTTTCCTCGGTCGCCCCGG
TGGACTACATAAAGTAGTTTCCTCGACCCACTAAATCCAAATACACCCTT
CTCGCGATAAAATCCAAGGCAAGCACCGCAGGAGGAAGGTGGGGCAAAAA
AGAAACAGAAAAAGAAGAAAAAAGCCCCAGTGTTTTTACCCCCTCCTGTG
TGACCCTGGTTGGTTCTAGCTGCAGAAAAAAAAAGTGGTAGTACTCTAAA
TACACCGCAACGTGTAGTACACGTCTCGCCTTGATCGGAAAGGGACTGTC
GCCAAAATAAATGGGACGAAAACACACACACACACCTTGTGGCCTTTTAT
CCCCGTACTGCCCGGCTTGACTGCCAGCCTGCCTTTCTCGTTTTCCCGGG
CTCTTGTACCCCCCCGCCTCCGCGTGGCCTCGTGTGGCTTTATTTTTCTA
TTTTATGTTTTTTAAAGAAATCATAAAATCAAAGACGGAACCTCCTCACA
TTAGAGACGGGACTCCGTGAGAATATAACGGTATTCCATACAGTGGTGTA
TTATTGGTCCGGCGTTTTTGTTTAGTCTCCCCCCCCCTCTGCACTGCATC
CGATCCCTGGAATTACTTCCAGGAATGGATGTGGTGCGGAGTGGGGGGTG
CCTGGTCGGCGAGAACCCGACACGGAACCCTCCGGCATTGTAGGCGGGTG
TGGGAAGCCTTCGGCTTGTCTTAGTCATCTCTCCTCCACTAGCGTGGTAC
CTCGTTTTTCTGGTGTTTTCCAACACCTTTCATTCTTTCTTCCGAGCGGT
ATGTATCCTATTTCTTCTCTGATTGAGCGCCAGCGAGACGCGAGACCCCT
CGGGGCCCAGTTTAGAATCATCGCAGGGCGCGCATGTACCATATTTTCTG
CTCGAGTTTATTTGCGCCGTCGAGTGTGCCCAGTTTTGTGACCACGGGCT
CCCATGGATGTTTTGGAAAGGCAGCTAATGTGAGAAACAAACAAAAAACG
TAAAACACACGCGCGCGCGTTGGTGAAGTAATGACAGCAAGACGTTTGGA
GTGAGCACTGATGCATGGATCAATTTGTCTACGCAGGCAGCTCGCTTGCT
TGAGCTCTTCATTCCCATATTGTACCCGATTTTCTTCTATTCTGGGCTTT
ATTCGCATCTACTGCTGTGTTTGTTGTAAGTGTAAATTTATATTTTCAGC
GCTCGCTGTGTCAAATTTCAAGAGTTGGGCTAGTACTCTCCTCTTGTACC
ATACTGGTAGACTGGAAGTGAAATGGGTTGTCCTATTTGTACCATGTATC
TCACACCGCCCGTCAGAGTGTACTAAAGCATGAATCCCCCCTCATTCGCC
CCAAGAGACTAGACTAGGGCGCTGGCTGCTTGCCAAGGGATCCAACACCG
AACACCTCCAGTAGCACTTTCCCTCTGATGACTGTCGGCCTGTCTCTTCT
TTTCGCATCAATACTTTTTATGTACTGCGGCGAGAAAGAACAGGTGACAT
CCCTGTCAAGACGAGGAACGCCTTCGCCGGACAGCGATACCGTCCCTGGC
GTCACCTTCCTTAAGGGCGATGCAACGGATCCCGATGTCCTGGCCAAAGT
TATCAGCGACGGTCCGTAGTTTGCTGTGACGACGCCAATCATGATGCAAG
ACAACACATCGCCGTATCATACACATGCGGCATTCGGGAACCCTGCCAAC
ACAGCAGCAGCAGCAGCAGCAGCAGCAGTTCCACCCCTAATCGAGCGGTT
GTTCGCACGACGCGCGCGAGGTACGCATGCACGGGCGTATTTCACGGGTA
TCCAAGACACGGACGGATTGCTGTAACGCTCGTAGCGCTCGTAATGCATC
GCACCGCAGGCAATTTCGACGGCGTTGTCCACGCCGTAGGGATGCTGTTC
GCCGGCAGCCTCAACCGCTACGCGAGCGGGTCCGGATCGGTGCCGAACCC
CGGCACGACGTACGACAAGATCACCAGGCAGACGGCCTTCGCGGCGACGG
CTGCTCTCGAAGATTTGGCCCGCGGGGGAGAGCAGGTAGTGCTTGAGGCT
GATGCTTTCGCTTTTAAGCAGTCGAGGTATTCTTGTCTTTTCTTGTCTCC
TGGGTTCTTCTTTCCCGGTCGCATGTTTCTGGCTGGGAGATGAAGGTTTT
CCAACCCGACATGGCTGTGCGCGCATTGTACAGCAGTATGTACAATACTG
GAAGAGGTGTTCCAAGTGCTATTATAGTAGTTCGGTTGGTTAGACGCGTG
CATGTACATAGCTCTCGTGACGCCACAGGCCATGGTCCCAGGACCTCAAG
TCGTCAAGACGATTTACCTTCGCTGCCACTCCCTCTCTCTCGGAACCTGC
AGCAACTTCATTTGTTCCCTTCAGCAGCTACATTTGTTCCCTTCAACTGC
AATTGTTCCCTTCAGCGGCTTCATTTGTTCCCTTCATTCAGCCCTGAGCC
GCCCTTGTCCGAATTCAAGCCACCCTCACTCGACGGAAAGGCTGGCACAC
CCAAAAGAAGGCGTTAACATCACACTTCGAAGTACGTATTGGTACATATC
GTATCATATGTACACACCTTCAAAGACTAAAATAAACAGCTCCAACACCA
CGCTTTACTTGCGGTTTCGAATCAATCCACGTGCCCTATAATACCGTAAA
TACCACCTTATTTCTTATTTCGGCCACACGTGCCCCCCCGGTGTCTGGCG
CTTCCTCCCAGTTCGCACTCCCGTGCCTGGCACACCGACGTGCACACATC
GTTGTGTTCAAACCCATCACGCTTCTTGCCGTGTGGCACTTTATGTGGCA
CTTTGTGGCACCTCACATCAGAGCCCGAGACCGTTCGTGTTTATCTTGTT
CCAAACCCACCACGCTTCTTGTCGTGTAGAGACCGTTCGTGTTTATCTCG
GCGGCGGAGGCTAAGTGGGGTTTCGACGGCATCTTCGAGGGGTCACCGGT
TGGGTTTCTGCACGACTACCTTGTCGCCAAAAGAGCCGCGGAGGACGAGG
TGTGTTGGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTG
GTGGTGGTGGTGGTGAGTGGTGTTTTTTGTCGTTGCTCATCGCCCAGAAT
ATGTATTGTAGCATTTTAATACAACTTTTTTTTACCCCAAAAAATGCGAA
AACGAAAACTCGGGAGCGCAAACTCCCACCCCACACAGGCGCAGACCCGC
CCCGGCCCCGGCAACAGCTTGCGCGCATGATTAAGCTGTTGATGACTTTA
TTGAGAACTTATGTGCATCCTGTTGCGCGTTTCTGAACAACAGAAGCTGC
TGCCTTCTGCCTGCCCGCCGCAAGGCCGAGCGAGTGTTTTGATGAGCGTA
CAGCAGTATGATCCATGCCGCTGCTGTCGCCGTATTTCAAACGAACGTGC
ACGCGTACGCAGCCTTTGCTCCACTAAGTATCCGTCTTTTGTTCCTTTCC
TGCCCTGCGTGCGTTGGACTTGACTGGTGCCTCTCGTGTGTGTCCAGCTG
CTCAACAACAAGCCTTCGCTGAGGGGAATCGTCCTGAGACCGTCTCTGGT
GTGGACGAAACAGCGACCGGCAGCGTTACCTGCGGTGGCCGCGTTTCAGC
TAGGCAGGTAGATACCTACCGTTTTGTTACTTCACGCCAGCCGTCTATTT
TGCGTCCAACCTGGCTCGACGACACAATAACCCTCCCGCAACCCTCCCCC
CCCCCCCCCGGCAACAATAGTACAACATGTTTAGCCTTGATGCCACATTT
TGATGCCACATTTTCCTTCGTCAGGGAAGGCGCCAAGTTTACTCTCCTCG
TCTTTTTTTCCCCCAAGACTTTTCGTGCGGCATTTTTTTCGTTTCATCTG
TCTCCTGCCCCCCCCCCCGCGCCTTCCTTTGTGTTCCTTTGTTAACGTCG
ATGTTTGGCCTCGCTCCCCCGCTCCTTGTATATGTGTACTTGGAATTATG
CATAATGTCTGCGTTTCCTCTTGGCATGCGTGGTGGTGGTCTTGTGTGGG
CGTGTGGACACGGGCTGCTGCTGCTGCTGTTTAGCAAGTTTTGGATGTTT
CGGGTGGGGCCTTACCTTTTACATTGGGAGGAGGAGCAGACAACATTCCC
GCTCGCAATCGTAATCGTTGGTCAAAGCAAGCAGCATGCTTCCAACAGCC
GTCAGCAAAAACGCGAAAAGCAAAGCACCAACATGTCGGTGGTGCCCGCA
CGCAGCGGCGGTACAGGTATAGAGACAGAGCTCAGCACCTCCTCGAAAGA
GCAAGAGATAACATGCGAAGTCAACTGCTGTCTGCCCAACCACATAGAAA
GAGTACGCTACAATATCAGCACGCAATGACTTTACGCCCCCCCCCCCGGT
GTTTTGGCGACAACAGCCGGCTAGGCCTCCCGTTCATCGACAGGCCCGTC
AACGTGGAAACGCTGGCTACGGCGGCGGTGGAAGCACTGTTTGACTCGAG
CGTCCGCGGGGTTCAGGACTGGCGAAGCATGCAGAAGCTGGCGTCGAGCT
ACGAGTCGAACAAGCCGAGCAGAGCCACGGCAGCAGCAGCAGCAGCAGCT
TCGGCCTCGTCGACGGCCGAGATCAGCGGCGATGGAAGTGCCTGCCGAGA
GGGTCTGTAGACTAGTGGACATCTATATGTGGTGTTTTTTTATGTAATAA
GGAAAAACTTGGCCCATCGACATTGCTTGTAGAGGGGAGCGGAGGGAGGG
AGAGCTCCAGATCTTTTTTGCTCCGGAGACCATGGGTTCTCCCGGCCAGC
ATATGGGTGATAATTAGAAGGCTGGGCTTCTGGAGGCAGGTCGTGGTGCA
ACGAGGGAAGACGGGGGTGTCGTGTTTCGTGTTTCGTGCTTTGGATTATT
GGCTTGGAACCGTTCACTTCCACAGGGTTACCGTACCGTTTTGTCGCCTC
GGGATTGTAGACTAAACTACAAGACATCAATGCATGCCGGGGGGCGAGAA
CGGTCATGGGCTGGTGCGGTGCGCGTGACACCGCAAAAACTCCGAGGGGG
GCCAAAGTGTTGTGTGCTACAGCTACAGCAGTATTCTGTAGGGGGTTGCA
CAACTTTGCAATATTTGAGTGTGTCGAGAGGTTTAGATGGACCGCAAGAA
GACGGCTTGGGAGGGCACCACTTGTGCGAATCAAAGCAGCGGCAGCAGCA
GGAGGAGGAGCAGCAGCCAAGCGAAACACGAAGAGTTTGATTCCACCAAA
AATCACCTGGTGGCGTGGCGCCTACCAGCCGTTCGACATGGCGTGTGACC
TCTCCCTGAATGATTGTCGATGCCTCGATAGATGGATCAATTCGCAGGGC
AGGGCGCGCACCAACCCTCGACACGAAAAAAATGAGCGCTTATGATACTG
GGAAAA back to topCoding sequence (CDS) from alignment at C-linearis_contig98:467903..473958+ >mRNA_C-linearis_contig98.17132.1 ID=mRNA_C-linearis_contig98.17132.1|Name=mRNA_C-linearis_contig98.17132.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig98:467903..473958+ (Chordaria linearis ClinC8C monoicous) ATGAAGCTTCTTCATCTGCTCTGCGTAGCAGGGGCGATGGCAACTGCTCG AGGACTGGCGCCTAACATCCTGGTGCTCGGCGGTACGGGATTCATTGGTT CCACCGTATCGCGCATCGCCATAGATAACGGATGTCAGATGAAGCTTCTT CATCTGCTCTGCGTAGCAGGGGCGATGGCAACTGCTCGAGGACTGGCGCC TAACATCCTGGTGCTCGGCGGTACGGGATTCATTGGTTCCACCGTATCGC GCATCGCCATAGATAACGGATGTCAGGTGACATCCCTGTCAAGACGAGGA ACGCCTTCGCCGGACAGCGATACCGTCCCTGGCGTCACCTTCCTTAAGGG CGATGCAACGGATCCCGATGTCCTGGCCAAAGTTATCAGCGACGGTGACA TCCCTGTCAAGACGAGGAACGCCTTCGCCGGACAGCGATACCGTCCCTGG CGTCACCTTCCTTAAGGGCGATGCAACGGATCCCGATGTCCTGGCCAAAG TTATCAGCGACGGCAATTTCGACGGCGTTGTCCACGCCGTAGGGATGCTG TTCGCCGGCAGCCTCAACCGCTACGCGAGCGGGTCCGGATCGGTGCCGAA CCCCGGCACGACGTACGACAAGATCACCAGGCAGACGGCCTTCGCGGCGA CGGCTGCTCTCGAAGATTTGGCCCGCGGGGGAGAGCAGGCAATTTCGACG GCGTTGTCCACGCCGTAGGGATGCTGTTCGCCGGCAGCCTCAACCGCTAC GCGAGCGGGTCCGGATCGGTGCCGAACCCCGGCACGACGTACGACAAGAT CACCAGGCAGACGGCCTTCGCGGCGACGGCTGCTCTCGAAGATTTGGCCC GCGGGGGAGAGCAGAGACCGTTCGTGTTTATCTCGGCGGCGGAGGCTAAG TGGGGTTTCGACGGCATCTTCGAGGGGTCACCGGTTGGGTTTCTGCACGA CTACCTTGTCGCCAAAAGAGCCGCGGAGGACGAGAGACCGTTCGTGTTTA TCTCGGCGGCGGAGGCTAAGTGGGGTTTCGACGGCATCTTCGAGGGGTCA CCGGTTGGGTTTCTGCACGACTACCTTGTCGCCAAAAGAGCCGCGGAGGA CGAGCTGCTCAACAACAAGCCTTCGCTGAGGGGAATCGTCCTGAGACCGT CTCTGGTGTGGACGAAACAGCGACCGGCAGCGTTACCTGCGGTGGCCGCG TTTCAGCTAGGCAGCTGCTCAACAACAAGCCTTCGCTGAGGGGAATCGTC CTGAGACCGTCTCTGGTGTGGACGAAACAGCGACCGGCAGCGTTACCTGC GGTGGCCGCGTTTCAGCTAGGCAGCCGGCTAGGCCTCCCGTTCATCGACA GGCCCGTCAACGTGGAAACGCTGGCTACGGCGGCGGTGGAAGCACTGTTT GACTCGAGCGTCCGCGGGGTTCAGGACTGGCGAAGCATGCAGAAGCTGGC GTCGAGCTACGAGTCGAACAAGCCGAGCAGAGCCACGGCAGCAGCAGCAG CAGCAGCTTCGGCCTCGTCGACGGCCGAGATCAGCGGCGATGGAAGTGCC TGCCGAGAGGGTCTGTAGCCGGCTAGGCCTCCCGTTCATCGACAGGCCCG TCAACGTGGAAACGCTGGCTACGGCGGCGGTGGAAGCACTGTTTGACTCG AGCGTCCGCGGGGTTCAGGACTGGCGAAGCATGCAGAAGCTGGCGTCGAG CTACGAGTCGAACAAGCCGAGCAGAGCCACGGCAGCAGCAGCAGCAGCAG CTTCGGCCTCGTCGACGGCCGAGATCAGCGGCGATGGAAGTGCCTGCCGA GAGGGTCTGTAG back to top
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