mRNA_C-linearis_contig98.17132.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A6H5KTE1_9PHAE (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTE1_9PHAE) HSP 1 Score: 431 bits (1108), Expect = 1.060e-144 Identity = 225/274 (82.12%), Postives = 249/274 (90.88%), Query Frame = 2 Query: 326 MKLLHLLCVAGAMA-TARGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPGVTFLKGDATDPDVLAKVISDG--NFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGG-EQRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASSYESNK 1135
M+LL LL + TA LAP ILVLGGTGFIGSTVSRIA+D+GC+VTSLSRRGTPSPDSD +PGV FLKGDATDP V+ +VI+DG ++DGVVHAVGMLFAGSLNR+ASGSGSVP+PGTTYDKITRQTAFAATAAL+ LA+GG +QRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRA EDELLNNKPSLRG+VLRPSLVWTK+RP AL VAAFQ+GSRLGLPFIDRPV+VETLA+AAVEALFDSSVRGVQDWR M+KLA SY++NK
Sbjct: 1 MQLLTLLIALAVVGDTAMALAPKILVLGGTGFIGSTVSRIAVDSGCEVTSLSRRGTPSPDSDPLPGVNFLKGDATDPAVVRQVINDGKCDYDGVVHAVGMLFAGSLNRFASGSGSVPDPGTTYDKITRQTAFAATAALDALAQGGSQQRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAVEDELLNNKPSLRGVVLRPSLVWTKRRPGALLPVAAFQIGSRLGLPFIDRPVHVETLASAAVEALFDSSVRGVQDWRGMEKLAGSYKANK 274
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A835YPV7_9STRA (NAD(P)-bd_dom domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPV7_9STRA) HSP 1 Score: 279 bits (713), Expect = 1.240e-85 Identity = 153/281 (54.45%), Postives = 200/281 (71.17%), Query Frame = 2 Query: 281 LFLLPLPATSKPLVRMKLLHLLCVAGAMATARGLAPN-ILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGGEQ-RPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLAS 1117
L L+P A P+ + LHL MAT+ LA N +LVLGGTGF+G T+++ A++ G VTSLSRRG D + T+L+GDA+D +A+V+ +G FD VVHA+GML SLNR+ASGSGSVP G TYD++TRQT FAA A+ + G+ PFVF+SAAEA W D +FEG+P+ FL YLVAKRAAE+ LL++ +LR VLRPSLVWTK+RPAALPAV+AF + +G+PFIDRPV+V TLA AAVEAL D+S G Q+++ M++LA+
Sbjct: 2 LLLVPAFALVSPVQQ---LHLPAALHMMATSSSLAANRLLVLGGTGFVGGTIAQEAVNRGYSVTSLSRRGRLDDADDRI---TWLEGDASDAGTVARVVQEGEFDAVVHAIGMLLDNSLNRFASGSGSVPGEGATYDQVTRQTVFAAADAVVSNRKAGQPPTPFVFVSAAEAAWTKDALFEGTPLAFLRRYLVAKRAAEERLLSDARNLRATVLRPSLVWTKERPAALPAVSAFTAANAIGIPFIDRPVSVTTLAAAAVEALEDASCSGTQNYKGMERLAA 276
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: L1I751_GUITC (Epimerase domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I751_GUITC) HSP 1 Score: 233 bits (594), Expect = 2.770e-68 Identity = 126/251 (50.20%), Postives = 170/251 (67.73%), Query Frame = 2 Query: 389 NILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPS--PDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAF-AATAALEDLARGGEQRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPS---LRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASSY 1123
ILVLGGTGF+GS V+++AI+ G +V +LSRRG P+ S + + KGDAT + KV+ +G F VVHA+GMLF LN+YASGSGSVP G+TYD+ITRQTAF A AA + + PF F+SAAE +W FD FEG+P+ +L YL+AKRA E EL++ + L+ I++RPSL+WT RP AL VAAF G+RLGLPF+D+PV V TL+ A ++ L S +GV ++ M++LA +
Sbjct: 17 KILVLGGTGFVGSNVAQLAIERGYEVVALSRRGEPTGASRSGAASKIAWRKGDATKKADIEKVMEEGGFTAVVHAIGMLFETELNKYASGSGSVPRAGSTYDEITRQTAFNAMEAAASSSSASSDPIPFAFVSAAEVRWTFDKSFEGTPLDWLRRYLIAKRAVESELIDVYGAGGLLKPIIVRPSLIWTWDRPGALLPVAAFTFGNRLGLPFVDKPVQVSTLSKAILKGLESKSEKGVYNFEGMERLAKEF 267
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A7S0QX38_9CHLO (Hypothetical protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0QX38_9CHLO) HSP 1 Score: 235 bits (600), Expect = 2.890e-68 Identity = 142/283 (50.18%), Postives = 181/283 (63.96%), Query Frame = 2 Query: 293 PLPATSKPLVRMKLLHLLCVAGAMATARGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPGVTFLKGDAT-DPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGGEQR---PFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDELLNN---KPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASS 1120
P P PLV+ L + A + ILVLGGTG++GS V RIA+ G V S+SRRG SD + GV + KGD DP ++A ++S+G FDGV+HA+GML N++ASGSGSVP PG+TYD++TRQTA AA +A G + PFVF+SAAEA W D PV FL YL AKRA EDELLNN R ++LRPSLV++ R A+LPAV AF LG+ L LP IDRPV VETLA AA++A+ D SV GVQ++ +M+ LA++
Sbjct: 59 PKPMCPTPLVKKSSSKLRATSKAAEAPS--SKKILVLGGTGYVGSEVCRIALSRGYSVVSVSRRGLVE-GSDQLKGVDWRKGDVVADPAIVAHILSEGGFDGVMHAIGMLLESDANKFASGSGSVPTPGSTYDQVTRQTALAAASAFSAACEGTDASSPPPFVFVSAAEAGWTQD-----PPVPFLVSYLKAKRAVEDELLNNYGASNKFRPVILRPSLVYSMDRTASLPAVGAFFLGNMLKLPGIDRPVLVETLAKAALKAMEDESVAGVQNFEAMEDLAAA 333
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: C1E365_MICCC (Epimerase domain-containing protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E365_MICCC) HSP 1 Score: 210 bits (535), Expect = 4.510e-59 Identity = 129/274 (47.08%), Postives = 162/274 (59.12%), Query Frame = 2 Query: 365 ATARGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPG-----VTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAF-AATAALE--------DLARGGEQR--------PFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDEL--LNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLA 1114
A + G +LVLGGTGFIGS + A+ +G V S+SRRG P D P V + KGD PD +A V+ +G F +HAVGML A +N ASGSGS P+PG TYD +TR TA AA AA D A GG PFVF+SAAEA+W F +PV +L DYL+AKRA E L + + +R LRPSLV+ +PAA+PAV AF LG+ LGLPF+DRPV V+TLA+AAV + D G D+R M++LA
Sbjct: 43 AGSGGTKGKLLVLGGTGFIGSKICERALSSGYDVVSISRRGDPPGDPHRYPDGVWNRVDWRKGDCVQPDTIATVLGEGGFVACIHAVGMLLASDINALASGSGSKPSPGATYDDVTRVTALNAADAAARLCTAVPNADTAGGGGTGGTTSKAPVPFVFVSAAEARWTFK-----APVAWLEDYLIAKRAVEARLREMTDAGEVRAACLRPSLVYCLDKPAAMPAVGAFYLGNLLGLPFVDRPVTVDTLASAAVRCVEDGRSTGALDYREMERLA 311
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: C1N367_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N367_MICPC) HSP 1 Score: 208 bits (530), Expect = 3.880e-58 Identity = 122/272 (44.85%), Postives = 166/272 (61.03%), Query Frame = 2 Query: 389 NILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPS-----PDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLAR----------------GGEQRPFVFISAAEAKWGFDGIFEGSPVGFLHDYLVAKRAAEDEL--LNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASSYESNK 1135
+LVLGGTGF+G V A++ G V S+SRRG PS P S V + GD T P + V+++G F G VHAVGML A LN YASGSGSVP+ G+TYD +TR++AF A A+ +L + PFVF+SAAEAKW F +PV +L +YLVAKRA E++L + +LR +LRPSLV+ +PA+ PAVAAF +G+ +GLPF+DRPV LATAAV A+ + +V G+ D+ +++L+ N+
Sbjct: 60 KLLVLGGTGFVGGNVIERALEGGYSVVSISRRGAPSASARGPTSSLDGRVDWRVGDVTLPSTVRDVLAEGGFVGCVHAVGMLLASDLNAYASGSGSVPSAGSTYDDVTRKSAFHAADAVAELVKPVDFTSASDGTRIYTTSKRSPPFVFVSAAEAKWDFR-----APVEWLEEYLVAKRAVEEKLGAMTAAGALRATILRPSLVYAFDKPASFPAVAAFVIGNAIGLPFVDRPVTAGALATAAVRAVKEEAVEGILDYVGIEELSCDASFNE 326
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A1Z5JSM0_FISSO (Epimerase domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSM0_FISSO) HSP 1 Score: 189 bits (479), Expect = 3.930e-51 Identity = 115/256 (44.92%), Postives = 158/256 (61.72%), Query Frame = 2 Query: 389 NILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSDTVPGVTFLKGDATDPDVLAKVISDG-NFDGVVHAVGMLF-----AGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARGG--EQRPFVFISAAEAKW----GFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLASS 1120
+LVLGGTGF+G V A+ G V SLSRRG P S V V + +GDA +A + + NF GVVH +G+LF GSLN Y SGSGS+P+ +TY+ ITRQTAF A + A +Q PF F SAAEA W G D I FL YLVAKRA E +LL+++P+LR I++RPSL+++ RP + P V AF +G+++GLPF+DRPV V+ L+ A V+A+ V+G+ ++ + ++SS
Sbjct: 52 KLLVLGGTGFLGQNVCEQALQAGYDVVSLSRRGLPP--SGGVSNVDYRQGDARLKASVANIFGESSNFAGVVHCIGLLFDDQSGLGSLNVYVSGSGSLPDAASTYETITRQTAFNAIEVATEYANKNALQQFPFCFTSAAEAGWPDVAGGDLIENYLAPDFLKRYLVAKRAVEAKLLSSEPTLRPIIVRPSLIYSMDRPLSFPPVGAFFVGNKVGLPFVDRPVTVQNLSNAMVKAIARDDVKGLLRYQQIDDISSS 305
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A7S3QJZ9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJZ9_9STRA) HSP 1 Score: 182 bits (463), Expect = 9.360e-49 Identity = 112/261 (42.91%), Postives = 161/261 (61.69%), Query Frame = 2 Query: 374 RGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRGTPSPDSD--TVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLFAG-----SLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLA--RGGEQRPFVFISAAEAKW----GFDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPSL-RGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLA 1114
+G ILVLGG+GF+G T+++ A G VTSLSRRG P D T + + GDA + V+ ++ +G++ + H +G+L G S NR+ SGSGSVP TYD+ITR TAF A AA E RGG PF+F SAAEA W G + +L YL AKR+ E+ L+N+ +L R ++ RPSL+++ + A+LP AF +G+R+GLPF+DRPV+V+TL+TAAV ++ VRGVQ ++ + +L+
Sbjct: 53 KGNKGKILVLGGSGFLGGTIAQRAALEGYSVTSLSRRGKPEKDPKDFTNDKIDYRIGDARESLVIENILDEGDYTAIFHCIGILLDGDSGLRSFNRFVSGSGSVPEENATYDEITRLTAFNAIAAAESYVSKRGGGPLPFIFTSAAEAGWPDVRGGKFVERTLTPRWLKRYLEAKRSVENRLMNSPQTLLRPVIFRPSLIYSLDKIASLPPWGAFFVGNRVGLPFVDRPVSVQTLSTAAVRSI-SKEVRGVQRFKEIDQLS 312
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A1Q9D6C4_SYMMI (NAD(P)-bd_dom domain-containing protein n=6 Tax=Symbiodinium TaxID=2949 RepID=A0A1Q9D6C4_SYMMI) HSP 1 Score: 176 bits (447), Expect = 3.270e-46 Identity = 118/294 (40.14%), Postives = 165/294 (56.12%), Query Frame = 2 Query: 284 FLLPLPATSKPLVRMKLLHLLCVAGAMATAR---GLAPN----ILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRG-TPSPDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLF-----AGSLNRYASGSGSVPNPGTTYDKITRQTAFAATAALEDLARG--GEQRPFVFISAAEAKWGFDGI---FEGSPVGFLHDYLVAKRAAEDELLNNKPSLRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKL 1111
+LL LP T + ++ TAR G P+ +LVLGG G++G V R+A+ G QVTSLSRRG P P + + V ++KG+A D + V+ G D VVHA+G+LF +LN SGSGS P+ +TYDKITRQTAF A++ R P +F+SAAEA W + E +L +YLVAKRA E EL ++ ++R + RPSL+W+ + LP + F L + +G+PF+D+ V V TL+ A V AL D V GVQ +R M++L
Sbjct: 41 WLLQLPTTKDVASNLVFVNTQAPVTRPVTARAAEGEEPSAGKRLLVLGGNGYVGREVCRLAVQRGFQVTSLSRRGENPEPGNAELDQVKWVKGNAADSSTVQNVV--GEADAVVHAIGLLFDVNSGLTNLNLVVSGSGSTPDDTSTYDKITRQTAFNVINAIKGRIRMPFSPPMPMMFVSAAEAGWPDVALGPEVEKVAPAWLKEYLVAKRAVEGELASSTDTIRSAIFRPSLIWSWTKFDVLPVIPVFNLLNAVGVPFVDKTVTVFTLSKAIVAALEDEGVAGVQRFREMEEL 332
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Match: A0A7R9UDT9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UDT9_9STRA) HSP 1 Score: 173 bits (439), Expect = 2.170e-45 Identity = 122/286 (42.66%), Postives = 162/286 (56.64%), Query Frame = 2 Query: 332 LLHLLCVAGAMATARGLAP-----------NILVLGGTGFIGSTVSRIAIDNGCQVTSLSRRG-TPSPDSDTVPGVTFLKGDATDPDVLAKVISDGNFDGVVHAVGMLF-----AGSLNRYASGSGSVPNPGTTYDKITRQTAFAA---TAALEDLARGGEQRPFVFISAAEAKWG---FDGIFEGSPVGFLHDYLVAKRAAEDELLNNKPS-LRGIVLRPSLVWTKQRPAALPAVAAFQLGSRLGLPFIDRPVNVETLATAAVEALFDSSVRGVQDWRSMQKLAS 1117
LL L AGA+ T R AP +LVLGGTGF+GS V AI G VT+LSRRG P PD + V +L DAT+ L K++S+ + D VVHAVG+LF +LN SGS SVP +TYD ITRQTA A T + + + ++R FVF+SAAEA W E +L YL AKR+ E LLN + + R ++ RPSL+WT + LP + F + S +GLPF+D+ V VE LA A VEA SV G+Q ++ +++L+S
Sbjct: 21 LLPSLSFAGALLTPRLAAPAGGREALAIKKKMLVLGGTGFVGSRVCEEAIKKGYAVTALSRRGQNPKPDDAQLSQVNWLTCDATEEAQLGKIMSEVDPDVVVHAVGLLFDIDSGLANLNLVVSGSKSVPGEKSTYDAITRQTAENALKNTISPRNPLKSLKKRTFVFVSAAEAGWPEVPLGDRVESLAPEWLVRYLGAKRSVEASLLNAQSNNFRPVIFRPSLIWTWSKLDVLPVIPVFNIASAIGLPFVDKTVRVEDLAAAIVEAAGTESVSGIQRFKEVEELSS 306 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17132.1 >prot_C-linearis_contig98.17132.1 ID=prot_C-linearis_contig98.17132.1|Name=mRNA_C-linearis_contig98.17132.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp MKLLHLLCVAGAMATARGLAPNILVLGGTGFIGSTVSRIAIDNGCQVTSLback to top mRNA from alignment at C-linearis_contig98:467903..473958+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig98.17132.1 ID=mRNA_C-linearis_contig98.17132.1|Name=mRNA_C-linearis_contig98.17132.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6056bp|location=Sequence derived from alignment at C-linearis_contig98:467903..473958+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig98:467903..473958+ >mRNA_C-linearis_contig98.17132.1 ID=mRNA_C-linearis_contig98.17132.1|Name=mRNA_C-linearis_contig98.17132.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig98:467903..473958+ (Chordaria linearis ClinC8C monoicous)back to top |