mRNA_C-linearis_contig98.17125.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig98.17125.1 vs. uniprot
Match: A0A6H5K5B5_9PHAE (BAH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5B5_9PHAE) HSP 1 Score: 608 bits (1569), Expect = 4.850e-185 Identity = 544/1285 (42.33%), Postives = 651/1285 (50.66%), Query Frame = 3
Query: 1107 SDVGSVDEDGEDYTWYSSERRTSGGERKHGRGRPRGERVYERVRINDNAEEINALRQELADGNVEKSNGMEKLRRLEEKMFFVKIGDAVEIHSGNESQPFVGRLENLDRATRRFRVRWFFVRHEVEEHLQEDMEPKEILLSDRYSN-QSLGSINRKADTVTEKSARGQELPPHTYLCYRGYDMKRKAIVALLEDGSLEKKTRGGGSKNKTKKDRSLARVARAVVSSPXXXXXXXXXXXXXXXXXXXXXXXXXIMSPS---QEDSDGPENVLLQRWNRVGPEFDVAVPAWKGPAAETLSPSPDEKKARLSSFHFLIFQLWSSSLHQSWSPSKVQEYLRDARALAPILPGTLVYIRPNADGQWSDGSDRKRARSAGPPDTTTTSHSVGAAAAAPAGPRLGWANGARSSFRWGLVSEPPSAEPPFTERASTEQRGRGVQVAQDRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYQQPGEGMGTVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNPFFANPFVFQQHQHANSLLQQQWLQQGVGRGG---DHPMA---MAPGSAAQGP--PRRPVPGSVPGPALSHARPPPPAPEYAIVWIANPCEGKPPLPVERWRVLERGFEEEALDVLWDTRGNFDEAKARVRSKEFRDELKAKLQGAGELWAFDQVKAAQKMCAKASAERRNEELGEMGDELTDEVEYGVESKPFPVVVDFGRRFTSLLRLGQPPKRRAVTEAAIAAATARXXXXXXXXYPRAGAVPFHGTVPVAGAGTXXXXAARAAKRPRPKQGTYADTRPKKKSAGGAVDGVGPGGETTDLARGPAARRAVKDAEDNHEREYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSEDTSYNPDDSEGSSLIFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGXXXXXXXXXXSTCLDTRTGHRAEQARHASRNPISSSASPP-GEIHDLCSSEDDDYEEDNALGEDGXXXXXXXXXXXXXXXXXXXXXXXXXPLPLSARAQAYPDGCTQEAGRGGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRHQSFAPTSVA--EAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDTEQGDGGPSSPQDGAGVGXXXXGDDLPPARDESPVPGVKSDNTGGEAMAPRPADETGGVLQAFMTRVKTTLQQELFDKFVHALSDYRAQNLVIDELVDMVSECFDHRQEREMRLVNEFNTFLPPGHAIRYTKA 4916
SD GSVDED +DYTW+SSE+R SGGERKHGRGR G RVY+RVRI D+AEEIN L+Q+LADG++E+S+G EKLR LE K F +KIGD +EIHSGN++QPFVG+L LDR TRRFRVRW+FVRHEV+ L EDMEPKEILLSD S+ Q L +++RK DTV + QELP +TYLCYRGYDMK K IV LLEDGSLEK RG K T+K ++ +R A + +S IMSPS QED+D E VLLQRWNR GPEFDV VP W P T P P+E K S F Q WS+ + P +++YL A+A+API+PGT+VYIRP DGQW DG K+ R P + V A AGPRL + ARS++RWGLV+EPP PP ++ T ++ A G + Q+ + M XXXXXXXXXXXX + + F Q NSLLQ +QQG GG H MA +AP S +G P P SVPG A+ A+ E ++VWIA+P EG PL VER R++ R FEEEA+++LWD RG F A V+SK ++D+LK +L+ AGE+W F QVKAA K C K +AERRNEE+GE+GDE TDE +YGV SKPF VVDF RRF +L R GQ KRR EAA TV A T A+ AKR RPK GTY D RP KK A G D S + S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX SR P S P G IHDLCSS+++D D L G P + A A G + AG G + HQ+ AP + A EAA XXXXXXXXX + + +G DG+GVG D PPARD+SPVPGV S NTGGEAMAPRP ETG VL FM R K TL E FDKFV ALS YR Q L I ELVD+V +CF+H +ERE++LV EFN+FLPPG+A++ T+A
Sbjct: 206 SDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLRELEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVDAQLAEDMEPKEILLSDCLSSYQLLDTVDRKVDTVRTRPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRG---KPSTRKGQASSRGAVSPGASSAAAAHTPPRASTSSS----------IMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRRT-KPPPEEYKVAQSRFDDC--QQWSTEA-LPFEPDALKDYLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRR--PNGSGGARSVVSAGLDTGAGPRL--TSMARSTYRWGLVAEPP---PPAQKQQLTREQVPSRTEALLVQGAPNIPMMQEPATGNTGVDMQMTPQWFREQQQQQQHVRFEEQRQXQLM--------------------XXXXXXXXXXXXYHRRDHISGDSFRPQLQLPPNSLLQSNLIQQGSNLGGLAGAHAMAAQEVAPASKPRGGGNPHALAPSSVPGDAM--AKEAGATNEESVVWIASPSEGSSPLQVERSRIVRREFEEEAMNILWDARGQFGVALDIVKSKRYQDDLKRRLKNAGEIWTFQQVKAAVKTCTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQNTKRRGTAEAA--------------------------TVAQGVAAT----ASTTAKRQRPKPGTYNDARPHKKRARAGSSG-------------------------------------------------------------SDRSCKQEQSYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRKPTSPPLDPSLGVIHDLCSSDEEDDIHD--LSRKG---------------------------PAAGSADAPSAGRSPGAGGRGDH--------------------------------EGHQAMAPETAAKVEAAAAARETRGVAVEAAARAEADGVDVENGGPAXXXXXXXXXAGMPSACPKEACGGTMSTEREG------DGSGVGS----DAPPPARDDSPVPGVASGNTGGEAMAPRPQAETGSVLHVFMDRCKATLTPERFDKFVSALSQYREQRLSIGELVDVVGQCFNHHEEREVKLVKEFNSFLPPGNAVKITRA 1282 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17125.1 >prot_C-linearis_contig98.17125.1 ID=prot_C-linearis_contig98.17125.1|Name=mRNA_C-linearis_contig98.17125.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1521bp MDVTLEPVVDMAPAITSATISYAAAAAAAAAAAAAAAATENDEPAAVASAback to top mRNA from alignment at C-linearis_contig98:375539..395801- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig98.17125.1 ID=mRNA_C-linearis_contig98.17125.1|Name=mRNA_C-linearis_contig98.17125.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=20263bp|location=Sequence derived from alignment at C-linearis_contig98:375539..395801- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig98:375539..395801- >mRNA_C-linearis_contig98.17125.1 ID=mRNA_C-linearis_contig98.17125.1|Name=mRNA_C-linearis_contig98.17125.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9126bp|location=Sequence derived from alignment at C-linearis_contig98:375539..395801- (Chordaria linearis ClinC8C monoicous)back to top |