mRNA_C-linearis_contig98.17125.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig98.17125.1 vs. uniprot
Match: A0A6H5K5B5_9PHAE (BAH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5B5_9PHAE) HSP 1 Score: 608 bits (1569), Expect = 4.850e-185 Identity = 544/1285 (42.33%), Postives = 651/1285 (50.66%), Query Frame = 3 Query: 1107 SDVGSVDEDGEDYTWYSSERRTSGGERKHGRGRPRGERVYERVRINDNAEEINALRQELADGNVEKSNGMEKLRRLEEKMFFVKIGDAVEIHSGNESQPFVGRLENLDRATRRFRVRWFFVRHEVEEHLQEDMEPKEILLSDRYSN-QSLGSINRKADTVTEKSARGQELPPHTYLCYRGYDMKRKAIVALLEDGSLEKKTRGGGSKNKTKKDRSLARVARAVVSSPXXXXXXXXXXXXXXXXXXXXXXXXXIMSPS---QEDSDGPENVLLQRWNRVGPEFDVAVPAWKGPAAETLSPSPDEKKARLSSFHFLIFQLWSSSLHQSWSPSKVQEYLRDARALAPILPGTLVYIRPNADGQWSDGSDRKRARSAGPPDTTTTSHSVGAAAAAPAGPRLGWANGARSSFRWGLVSEPPSAEPPFTERASTEQRGRGVQVAQDRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQYQQPGEGMGTVQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHNPFFANPFVFQQHQHANSLLQQQWLQQGVGRGG---DHPMA---MAPGSAAQGP--PRRPVPGSVPGPALSHARPPPPAPEYAIVWIANPCEGKPPLPVERWRVLERGFEEEALDVLWDTRGNFDEAKARVRSKEFRDELKAKLQGAGELWAFDQVKAAQKMCAKASAERRNEELGEMGDELTDEVEYGVESKPFPVVVDFGRRFTSLLRLGQPPKRRAVTEAAIAAATARXXXXXXXXYPRAGAVPFHGTVPVAGAGTXXXXAARAAKRPRPKQGTYADTRPKKKSAGGAVDGVGPGGETTDLARGPAARRAVKDAEDNHEREYXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSEDTSYNPDDSEGSSLIFVRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGXXXXXXXXXXSTCLDTRTGHRAEQARHASRNPISSSASPP-GEIHDLCSSEDDDYEEDNALGEDGXXXXXXXXXXXXXXXXXXXXXXXXXPLPLSARAQAYPDGCTQEAGRGGSSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRHQSFAPTSVA--EAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKDTEQGDGGPSSPQDGAGVGXXXXGDDLPPARDESPVPGVKSDNTGGEAMAPRPADETGGVLQAFMTRVKTTLQQELFDKFVHALSDYRAQNLVIDELVDMVSECFDHRQEREMRLVNEFNTFLPPGHAIRYTKA 4916
SD GSVDED +DYTW+SSE+R SGGERKHGRGR G RVY+RVRI D+AEEIN L+Q+LADG++E+S+G EKLR LE K F +KIGD +EIHSGN++QPFVG+L LDR TRRFRVRW+FVRHEV+ L EDMEPKEILLSD S+ Q L +++RK DTV + QELP +TYLCYRGYDMK K IV LLEDGSLEK RG K T+K ++ +R A + +S IMSPS QED+D E VLLQRWNR GPEFDV VP W P T P P+E K S F Q WS+ + P +++YL A+A+API+PGT+VYIRP DGQW DG K+ R P + V A AGPRL + ARS++RWGLV+EPP PP ++ T ++ A G + Q+ + M XXXXXXXXXXXX + + F Q NSLLQ +QQG GG H MA +AP S +G P P SVPG A+ A+ E ++VWIA+P EG PL VER R++ R FEEEA+++LWD RG F A V+SK ++D+LK +L+ AGE+W F QVKAA K C K +AERRNEE+GE+GDE TDE +YGV SKPF VVDF RRF +L R GQ KRR EAA TV A T A+ AKR RPK GTY D RP KK A G D S + S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXX SR P S P G IHDLCSS+++D D L G P + A A G + AG G + HQ+ AP + A EAA XXXXXXXXX + + +G DG+GVG D PPARD+SPVPGV S NTGGEAMAPRP ETG VL FM R K TL E FDKFV ALS YR Q L I ELVD+V +CF+H +ERE++LV EFN+FLPPG+A++ T+A
Sbjct: 206 SDAGSVDEDNDDYTWFSSEKRVSGGERKHGRGRLGGGRVYDRVRITDHAEEINTLKQQLADGSIEESDGREKLRELEAKTFTIKIGDTIEIHSGNDAQPFVGKLVLLDRGTRRFRVRWYFVRHEVDAQLAEDMEPKEILLSDCLSSYQLLDTVDRKVDTVRTRPPHAQELPANTYLCYRGYDMKAKMIVPLLEDGSLEKFRRG---KPSTRKGQASSRGAVSPGASSAAAAHTPPRASTSSS----------IMSPSNPSQEDNDPSELVLLQRWNRTGPEFDVYVPKWTEPTRRT-KPPPEEYKVAQSRFDDC--QQWSTEA-LPFEPDALKDYLARAKAIAPIIPGTIVYIRPRPDGQWGDGKTVKQVRR--PNGSGGARSVVSAGLDTGAGPRL--TSMARSTYRWGLVAEPP---PPAQKQQLTREQVPSRTEALLVQGAPNIPMMQEPATGNTGVDMQMTPQWFREQQQQQQHVRFEEQRQXQLM--------------------XXXXXXXXXXXXYHRRDHISGDSFRPQLQLPPNSLLQSNLIQQGSNLGGLAGAHAMAAQEVAPASKPRGGGNPHALAPSSVPGDAM--AKEAGATNEESVVWIASPSEGSSPLQVERSRIVRREFEEEAMNILWDARGQFGVALDIVKSKRYQDDLKRRLKNAGEIWTFQQVKAAVKTCTKLAAERRNEEMGELGDECTDEADYGVASKPFRCVVDFSRRFATLSRFGQNTKRRGTAEAA--------------------------TVAQGVAAT----ASTTAKRQRPKPGTYNDARPHKKRARAGSSG-------------------------------------------------------------SDRSCKQEQSYEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSRKPTSPPLDPSLGVIHDLCSSDEEDDIHD--LSRKG---------------------------PAAGSADAPSAGRSPGAGGRGDH--------------------------------EGHQAMAPETAAKVEAAAAARETRGVAVEAAARAEADGVDVENGGPAXXXXXXXXXAGMPSACPKEACGGTMSTEREG------DGSGVGS----DAPPPARDDSPVPGVASGNTGGEAMAPRPQAETGSVLHVFMDRCKATLTPERFDKFVSALSQYREQRLSIGELVDVVGQCFNHHEEREVKLVKEFNSFLPPGNAVKITRA 1282 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig98.17125.1 >prot_C-linearis_contig98.17125.1 ID=prot_C-linearis_contig98.17125.1|Name=mRNA_C-linearis_contig98.17125.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=1521bp MDVTLEPVVDMAPAITSATISYAAAAAAAAAAAAAAAATENDEPAAVASAback to top mRNA from alignment at C-linearis_contig98:375539..395801- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig98.17125.1 ID=mRNA_C-linearis_contig98.17125.1|Name=mRNA_C-linearis_contig98.17125.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=20263bp|location=Sequence derived from alignment at C-linearis_contig98:375539..395801- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig98:375539..395801- >mRNA_C-linearis_contig98.17125.1 ID=mRNA_C-linearis_contig98.17125.1|Name=mRNA_C-linearis_contig98.17125.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=9126bp|location=Sequence derived from alignment at C-linearis_contig98:375539..395801- (Chordaria linearis ClinC8C monoicous)back to top |