mRNA_C-linearis_contig98.17117.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig98.17117.1
Unique NamemRNA_C-linearis_contig98.17117.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig98.17117.1 vs. uniprot
Match: A0A8B7ZC05_ACAPL (leucine-rich repeat-containing protein 74A-like isoform X1 n=3 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7ZC05_ACAPL)

HSP 1 Score: 55.5 bits (132), Expect = 4.230e-5
Identity = 26/63 (41.27%), Postives = 41/63 (65.08%), Query Frame = 1 
Query:   31 TGKHAYTSACARLGIVPVSHILSRLSSERLSLRHALLNPSSAKALSEGLSFNRCIRSLNLGSN 219
            TG+ AYT AC  +G+VPVSH L  +++ ++S++H  L P  AKA++  L  N  + +L+L  N
Sbjct:  142 TGRRAYTQACKEIGVVPVSHFLRHITTNKISMKHHGLGPLGAKAIAIPLVTNTSVLTLDLEDN 204
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A8B7ZC05_ACAPL4.230e-541.27leucine-rich repeat-containing protein 74A-like is... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:277413..280323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size798
Cds size798
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17117.1prot_C-linearis_contig98.17117.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig98 277413..280323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930839.144224-CDS-C-linearis_contig98:277412..2774871622930839.144224-CDS-C-linearis_contig98:277412..277487Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 277413..277487 -
1690881276.0583384-CDS-C-linearis_contig98:277412..2774871690881276.0583384-CDS-C-linearis_contig98:277412..277487Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 277413..277487 -
1622930839.1570342-CDS-C-linearis_contig98:277954..2781741622930839.1570342-CDS-C-linearis_contig98:277954..278174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 277955..278174 -
1690881276.0687714-CDS-C-linearis_contig98:277954..2781741690881276.0687714-CDS-C-linearis_contig98:277954..278174Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 277955..278174 -
1622930839.1753893-CDS-C-linearis_contig98:278434..2786311622930839.1753893-CDS-C-linearis_contig98:278434..278631Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 278435..278631 -
1690881276.084743-CDS-C-linearis_contig98:278434..2786311690881276.084743-CDS-C-linearis_contig98:278434..278631Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 278435..278631 -
1622930839.1988308-CDS-C-linearis_contig98:279252..2793431622930839.1988308-CDS-C-linearis_contig98:279252..279343Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 279253..279343 -
1690881276.0947719-CDS-C-linearis_contig98:279252..2793431690881276.0947719-CDS-C-linearis_contig98:279252..279343Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 279253..279343 -
1622930839.2125525-CDS-C-linearis_contig98:279715..2798781622930839.2125525-CDS-C-linearis_contig98:279715..279878Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 279716..279878 -
1690881276.1149685-CDS-C-linearis_contig98:279715..2798781690881276.1149685-CDS-C-linearis_contig98:279715..279878Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 279716..279878 -
1622930839.2291834-CDS-C-linearis_contig98:280271..2803231622930839.2291834-CDS-C-linearis_contig98:280271..280323Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 280272..280323 -
1690881276.1275146-CDS-C-linearis_contig98:280271..2803231690881276.1275146-CDS-C-linearis_contig98:280271..280323Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 280272..280323 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig98.17117.1

>prot_C-linearis_contig98.17117.1 ID=prot_C-linearis_contig98.17117.1|Name=mRNA_C-linearis_contig98.17117.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=266bp
ERRDEHQHQHTGKHAYTSACARLGIVPVSHILSRLSSERLSLRHALLNPS
SAKALSEGLSFNRCIRSLNLGSNLLGDDSARPLLEAISGNLSLTKLDLSR
NLLSDRFGELLAQSLASPLCALRDLVLAGNFLSDRFTDALSKGLRNLIVV
GFSPLRNLDVSNNKICDRNRETLASILCRCSLYSLNLSWNDLRESETAKA
GRVGDNFDVNAGYPLANAALVHPGQLVSLELSFNALPDVFGVIVGGMLAG
NISLAVLDLSRNHLGQ
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mRNA from alignment at C-linearis_contig98:277413..280323-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17117.1 ID=mRNA_C-linearis_contig98.17117.1|Name=mRNA_C-linearis_contig98.17117.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2911bp|location=Sequence derived from alignment at C-linearis_contig98:277413..280323- (Chordaria linearis ClinC8C monoicous)
GAACGACGAGATGAACACCAGCACCAGCACACCGGAAAGCACGCTTATAC
ATGTGAGGGGACCGCACAATGCTGTATCGTGGCACTGCAATAACATGCAA
GAGAACGGTACGTGGAGCCGGTAACATAATAAAATATTGTTTGTAGCTCA
AAGGTTTCGAGCTTGCTCGAGGTAGACTACGTCGGTGTGCGCTCTACACA
CAATAACTATTTAGTGTACATACCGGTAGTCGAGGCATCATACCGGTTGC
CCGCCGAGGAACTCGGAAGATGAGACTAAAGCTACCGTCAAAAAACGGTG
CATTTACTCCCCATGCGACTTAAGGTAAACAACGCATTCAACGGTCCTGC
CTGTCAAGAAGAGGCATGGGTGAAAATATCAATACACATCATGCAGATCT
CCCAACTTCCATTTGTTGCTTCGTGCTGCTGCGTTCATGTGTTAGCGGCG
TGCGCCAGGTTGGGAATCGTGCCTGTATCCCATATCCTGTCCAGGCTCTC
ATCGGAGCGCTTGAGCCTCCGACACGCGCTGCTCAACCCCTCCTCGGCTA
AGGCGCTGTCGGAAGGACTATCTTTCAATCGATGCATTCGATCGCTCAAT
CTGGGCAGGTACTGAGTGACAGGATGAAAAAACGTAGCGTGCGTACATTG
AAGTACTCCGGAGCTATTTTTGTTTTGCTGTGTGCCTTCAGGAAGCATAG
TCCCAAAGTTAGGGAAGTTGTTGCGTGCCATCAGTAGCAGGCGGTGGTAC
TCGGCAGAGCTGCACCTATCGCCGCGTGGCATCTCTCCAGATCAAGGGTG
CGGTTCTCTACCGGCCGAACCTATTCGTTGTTCCTCGCACACACACACAA
ACCTAGTCTATAGCTCCAATCACGACGGGCGAACTCAAATAAGTGATTCA
TTGTGGACGCAAACATGAACCGAACCTCTTCGTTCGCATAACCCTTGTCG
CCTGTAATCCGTTTGAAACATCAACTAAAGCAACTTGCTCGGGGATGACA
GCGCTCGTCCGCTATTGGAGGCTATATCCGGGAATCTCTCCTTGACAAAG
TTGGACCTCTCCAGAAACTTGGTGAGCTTGGCCATGGAAACTGCCTATTC
TGTTTTAGGCTTTACGAGGTGAAAATCATCTAGGGGGCAACATAACCCCT
GCATGTTCCTTAGCTATGAAAGTAGCTGTTTCAGAGTTCCAAAAACGTTG
GCCCCCGAAGTGGCTACGTTCTCCAGCGCACGCCCGAAGGCACGAAGGCA
TGTTTGTCGGGGCACACGAGTGTAAGGGGTTACGTGTATAAAGAAACCTC
TCGATACGTTTGGTGCTCTCGCCATCCTCCGCCGGAGGTGTTGCGAATTC
TCAGTTGTGGAAAACGTATTAATAATAGTGCATTACTTTGTGCCGACAGC
GGGTACAGAGCGACCATGGCTTGTTTAGATCCTGCAGTTGCCTGAATGCC
CCCTGATCTGTGGTGTCTTTGCCGCTTCGTACACTATATACCATGGTACG
AAGTGGGAGATCTACCAATCGTTTGGCCAAGCCCTTCACCTTGTACGATC
CATGAGCAAGATATTTAATGAACGTTCCGACGCGGAAAGCCCTTATGCAT
ATTTTCACTAACCTGTAGCGGATTTCGGCATTGGGCTTTGTTGGCGTCGC
GCGCATTTTTTTGCATGGTTTCCCCCTCATTTGGCCCACCAGCTGAGCGA
CAGATTTGGAGAGCTTCTGGCTCAGAGCCTTGCTTCGCCCCTGTGCGCTT
TGAGGGACCTCGTGCTTGCGGGTAACTTCCTCTCCGATCGCTTCACCGAC
GCCTTGAGCAAAGGCTTGCGAAACCTCATAGTAGTGGGCTTTTCCCCCCT
TAGGAACTTGGATGTCAGCAACAACAAAATCTGTGATAGGTGAGACAAAA
AGCAAACTCTCGAAGTAGATCAGACAACAAACGAACCAACCGTACGGGTT
TGCGGTCGTTGGTTGTTTATGTTTGTGTTCCAAAGTGCCGTACATGTTCA
TCTCATGTCACCATCCAGCAGCTCTAAAAGCGATGTTCGCGGTCCATTCG
AGGCCGAGCCAACCCAAGGAACCACAAAATGAAGAGCCGTTTCCAAGCGA
TAGGGACCGTTTCAATTCGAGATTTTCACCTCTTTTAATACCATTACAGG
AACCGTGAGACACTGGCGTCTATACTATGCCGCTGCTCTCTGTATTCCTT
GAACCTGAGCTGGAACGACCTGAGAGAGAGCGAAACTGCGAAGGCCGGGC
GCGTTGGTGACAACTTCGACGTTAACGCTGGCTATCCGCTTGCCAACGCC
GCGCTTGTGCACCCCGGACAGCTTGTGAGCCTCGAGCTGTCCTTCAACGC
CTTACCTGACGTTTTTGGGGTACGTATGTTCGGCTTGGTACCGTGCGATT
GCGTGTAGCCTGGAAAATACGCGCGAGTAAGTACACTACGCAGATCAAAG
AGGGGCTCGAGGTACTGCTGCACTGGACACACGTGTGGCATGGCGCGGCG
CTTCTTTGCAGGGAGCTGTCATAGGAATAACGTGCCAGCGAGCAACAAAA
TGACTGAGATATTGGTAGGCTCATACTTCTACACGTTTGTGAGAGCATGC
GCAGCATCAACGATGCAAGCTGAAAAGCAGCACGGTGAGAGGATGGCCCG
TACTCCTGCTGCATCAGTGTGTGCCCATTGGTGGGCTGCTTGGAGCGCTA
GGACTAGGAAGAAGGTGGTAATCGGTAGGTTAGGGAGTGAGGACATGCAT
TTTTGTTGAGACACAAGAGCAGAGAACGTGTTTGGGTCACATGTCAAATC
TCGTCTGGTGGTGGTGATGCACCTGTCCTATTTTAGGTTATCGTCGGTGG
CATGCTGGCGGGCAACATCTCTCTGGCGGTACTTGACCTCAGCAGGAACC
ACCTCGGACAA
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Coding sequence (CDS) from alignment at C-linearis_contig98:277413..280323-

>mRNA_C-linearis_contig98.17117.1 ID=mRNA_C-linearis_contig98.17117.1|Name=mRNA_C-linearis_contig98.17117.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1596bp|location=Sequence derived from alignment at C-linearis_contig98:277413..280323- (Chordaria linearis ClinC8C monoicous)
GAACGACGAGATGAACACCAGCACCAGCACACCGGAAAGCACGCTTATAC
ATGAACGACGAGATGAACACCAGCACCAGCACACCGGAAAGCACGCTTAT
ACATCGGCGTGCGCCAGGTTGGGAATCGTGCCTGTATCCCATATCCTGTC
CAGGCTCTCATCGGAGCGCTTGAGCCTCCGACACGCGCTGCTCAACCCCT
CCTCGGCTAAGGCGCTGTCGGAAGGACTATCTTTCAATCGATGCATTCGA
TCGCTCAATCTGGGCAGCGGCGTGCGCCAGGTTGGGAATCGTGCCTGTAT
CCCATATCCTGTCCAGGCTCTCATCGGAGCGCTTGAGCCTCCGACACGCG
CTGCTCAACCCCTCCTCGGCTAAGGCGCTGTCGGAAGGACTATCTTTCAA
TCGATGCATTCGATCGCTCAATCTGGGCAGCAACTTGCTCGGGGATGACA
GCGCTCGTCCGCTATTGGAGGCTATATCCGGGAATCTCTCCTTGACAAAG
TTGGACCTCTCCAGAAACTTGCAACTTGCTCGGGGATGACAGCGCTCGTC
CGCTATTGGAGGCTATATCCGGGAATCTCTCCTTGACAAAGTTGGACCTC
TCCAGAAACTTGCTGAGCGACAGATTTGGAGAGCTTCTGGCTCAGAGCCT
TGCTTCGCCCCTGTGCGCTTTGAGGGACCTCGTGCTTGCGGGTAACTTCC
TCTCCGATCGCTTCACCGACGCCTTGAGCAAAGGCTTGCGAAACCTCATA
GTAGTGGGCTTTTCCCCCCTTAGGAACTTGGATGTCAGCAACAACAAAAT
CTGTGATAGCTGAGCGACAGATTTGGAGAGCTTCTGGCTCAGAGCCTTGC
TTCGCCCCTGTGCGCTTTGAGGGACCTCGTGCTTGCGGGTAACTTCCTCT
CCGATCGCTTCACCGACGCCTTGAGCAAAGGCTTGCGAAACCTCATAGTA
GTGGGCTTTTCCCCCCTTAGGAACTTGGATGTCAGCAACAACAAAATCTG
TGATAGGAACCGTGAGACACTGGCGTCTATACTATGCCGCTGCTCTCTGT
ATTCCTTGAACCTGAGCTGGAACGACCTGAGAGAGAGCGAAACTGCGAAG
GCCGGGCGCGTTGGTGACAACTTCGACGTTAACGCTGGCTATCCGCTTGC
CAACGCCGCGCTTGTGCACCCCGGACAGCTTGTGAGCCTCGAGCTGTCCT
TCAACGCCTTACCTGACGTTTTTGGGGAACCGTGAGACACTGGCGTCTAT
ACTATGCCGCTGCTCTCTGTATTCCTTGAACCTGAGCTGGAACGACCTGA
GAGAGAGCGAAACTGCGAAGGCCGGGCGCGTTGGTGACAACTTCGACGTT
AACGCTGGCTATCCGCTTGCCAACGCCGCGCTTGTGCACCCCGGACAGCT
TGTGAGCCTCGAGCTGTCCTTCAACGCCTTACCTGACGTTTTTGGGGTTA
TCGTCGGTGGCATGCTGGCGGGCAACATCTCTCTGGCGGTACTTGACCTC
AGCAGGAACCACCTCGGACAAGTTATCGTCGGTGGCATGCTGGCGGGCAA
CATCTCTCTGGCGGTACTTGACCTCAGCAGGAACCACCTCGGACAA
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