mRNA_C-linearis_contig98.17115.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig98.17115.1
Unique NamemRNA_C-linearis_contig98.17115.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig98.17115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig98contigC-linearis_contig98:63641..64833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930838.097119-CDS-C-linearis_contig98:63640..636971622930838.097119-CDS-C-linearis_contig98:63640..63697Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 63641..63697 +
1690881275.6112297-CDS-C-linearis_contig98:63640..636971690881275.6112297-CDS-C-linearis_contig98:63640..63697Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 63641..63697 +
1622930838.1128526-CDS-C-linearis_contig98:64689..648331622930838.1128526-CDS-C-linearis_contig98:64689..64833Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 64690..64833 +
1690881275.6214716-CDS-C-linearis_contig98:64689..648331690881275.6214716-CDS-C-linearis_contig98:64689..64833Chordaria linearis ClinC8C monoicousCDSC-linearis_contig98 64690..64833 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig98.17115.1prot_C-linearis_contig98.17115.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig98 63641..64833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig98.17115.1

>prot_C-linearis_contig98.17115.1 ID=prot_C-linearis_contig98.17115.1|Name=mRNA_C-linearis_contig98.17115.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=67bp
KTGAPGAFRLFDDIPYAPIPDPSQWRSLTRPLYGLFVLWGTACALVPTLL
DGLFSLSVSPSGLDVC*
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mRNA from alignment at C-linearis_contig98:63641..64833+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig98.17115.1 ID=mRNA_C-linearis_contig98.17115.1|Name=mRNA_C-linearis_contig98.17115.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1193bp|location=Sequence derived from alignment at C-linearis_contig98:63641..64833+ (Chordaria linearis ClinC8C monoicous)
AAAACGGGGGCGCCGGGTGCGTTTCGACTCTTCGACGACATCCCCTACGC
ACCAATCACGCGGGCGCAAACGCAAACCCCGCGACCGCCCCACCGCCACC
CCCACAGCAGCGCAGCACCGTGCGAACGAAACCAGAGCTCTCATGCAGCG
CATGCACCAGGCCTCAGCATGCATCAACCAAGCCACCGACCGCATCTACC
ATGCGTCCGAAATCATCGCCGAAGTTCAACGTGCCCTCCTCCGGTCGACA
CGCGCCGACGCCGGTGAAATTCACGAGGACGACACAGAGTCTGACGATAA
CGCCTCGAACTATCTAGACCAGGCTGACGCCCTCGACAAGTCGACCTTCT
GGGGCGACGATGATGACGCCTCCCCCGGATCGGCTCTGTTTTCGGGTCTA
TGAACTAGCGTAGCGGCGTCGCGTGCCGTACCACCCTACTGCGTACTTAT
GTGTTTTATTTTTCCGGCCTTTGAGCTTTTGTACCGCTGTACTAGTTCTT
CTTGGGTTTCCTCGCGTTTCTTCCCTTCCACGAGTGCGACTCCACCTCTT
ACCTCGGTACGGTTTGCGGTTCCCTTCATGCTGCTTCGACTCTGGTGCAC
CCGTGCATTTCTACGTCCTTCGATTTTGACTCCGATATTGGCGTCCGGGC
TTCTTCTGACTGCGATGCGGATTTTTCCATACCGTGGCGTGCTTCTCCTG
TAGATTTTGGCCCGATTTTGGGTGTACCTGCACCTTCTGCGGTCGCACAT
TTTGGGCTTTGCTTTCGTGGCTTGCGTTCCGCCGTCCCCTCTGATTCCGG
CCCGGATTCTCAGTATCCGCGTCTTACTTTGTTTCTTTGTTTTACTTTTG
TTTTATTTTTTGTTCTCTCTGTCCTGTTTTCGGCTAATGCCACCGATTTA
AACCCACCGCCTTTATCTTGGCCCCATGCATCATTGCTGGGCGTGTCACC
GCCGTATCCGTGCCTACATCGCCCGCCGGCCACGCTATCTTTCACCCCAC
ATCCCCACGACGACCAAATGCACGCACACCCGTTTTTGGTGTCAACGTTC
CGGACCCGTCACAATGGCGCAGCTTGACCAGGCCGCTTTACGGCCTCTTT
GTTTTGTGGGGGACTGCTTGTGCGCTTGTACCGACGCTTTTGGACGGGTT
GTTCTCTCTTTCGGTTTCACCCTCCGGCCTGGACGTGTGTTAA
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Coding sequence (CDS) from alignment at C-linearis_contig98:63641..64833+

>mRNA_C-linearis_contig98.17115.1 ID=mRNA_C-linearis_contig98.17115.1|Name=mRNA_C-linearis_contig98.17115.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at C-linearis_contig98:63641..64833+ (Chordaria linearis ClinC8C monoicous)
AAAACGGGGGCGCCGGGTGCGTTTCGACTCTTCGACGACATCCCCTACGC
ACCAATCAAAACGGGGGCGCCGGGTGCGTTTCGACTCTTCGACGACATCC
CCTACGCACCAATCCCGGACCCGTCACAATGGCGCAGCTTGACCAGGCCG
CTTTACGGCCTCTTTGTTTTGTGGGGGACTGCTTGTGCGCTTGTACCGAC
GCTTTTGGACGGGTTGTTCTCTCTTTCGGTTTCACCCTCCGGCCTGGACG
TGTGTTAACCGGACCCGTCACAATGGCGCAGCTTGACCAGGCCGCTTTAC
GGCCTCTTTGTTTTGTGGGGGACTGCTTGTGCGCTTGTACCGACGCTTTT
GGACGGGTTGTTCTCTCTTTCGGTTTCACCCTCCGGCCTGGACGTGTGTT
AA
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