mRNA_C-linearis_contig97.17113.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17113.1
Unique NamemRNA_C-linearis_contig97.17113.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:583968..584407 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size424
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17113.1prot_C-linearis_contig97.17113.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 584051..584378 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.0872695-UTR-C-linearis_contig97:583967..5840501622930828.0872695-UTR-C-linearis_contig97:583967..584050Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 583968..584050 -
1690881270.7095003-UTR-C-linearis_contig97:583967..5840501690881270.7095003-UTR-C-linearis_contig97:583967..584050Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 583968..584050 -
1622930828.171902-UTR-C-linearis_contig97:584378..5844071622930828.171902-UTR-C-linearis_contig97:584378..584407Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 584379..584407 -
1690881270.7466185-UTR-C-linearis_contig97:584378..5844071690881270.7466185-UTR-C-linearis_contig97:584378..584407Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 584379..584407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.1335747-CDS-C-linearis_contig97:584050..5842901622930828.1335747-CDS-C-linearis_contig97:584050..584290Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 584051..584290 -
1690881270.7256625-CDS-C-linearis_contig97:584050..5842901690881270.7256625-CDS-C-linearis_contig97:584050..584290Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 584051..584290 -
1622930828.154104-CDS-C-linearis_contig97:584306..5843781622930828.154104-CDS-C-linearis_contig97:584306..584378Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 584307..584378 -
1690881270.7350605-CDS-C-linearis_contig97:584306..5843781690881270.7350605-CDS-C-linearis_contig97:584306..584378Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 584307..584378 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17113.1

>prot_C-linearis_contig97.17113.1 ID=prot_C-linearis_contig97.17113.1|Name=mRNA_C-linearis_contig97.17113.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=104bp
MASPVMEGMFLAPAAAAVKAVAVKLCLIRGFPALSLRSALVFNIVILLCL
VKAPALSLGSPLVFNMLLCSLCRYPSSLFIHLPSDLNGVPSRRSNSLLLS
TLS*
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mRNA from alignment at C-linearis_contig97:583968..584407-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17113.1 ID=mRNA_C-linearis_contig97.17113.1|Name=mRNA_C-linearis_contig97.17113.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=440bp|location=Sequence derived from alignment at C-linearis_contig97:583968..584407- (Chordaria linearis ClinC8C monoicous)
TGTAATGTCTTCATCGTCCGCTGACGTCGATGGCATCTCCCGTGATGGAA
GGAATGTTCTTGGCTCCTGCTGCCGCTGCTGTGAAAGCTGTTGCTGTGAA
AGCTGTTGCTGTGAAAGCTGTGTCTCATCAGGGGGTTCCCGGCTCTGAGT
CTTCGGTCCGCCCTGGTCTTCAACATTGTTATACTCCTGTGTCTCGTCAA
GGCGCCGGCTCTGAGTCTCGGCAGTCCCCTGGTCTTCAACATGTTGTTGT
GCTCTCTCTGTAGATACCCTTCCTCTCTCTTTATACACCTGCCGAGCGAC
TTGAATGGCGTCCCATCCCGTCGCTCGAACTCGCTGCTGCTATCGACCCT
CTCATGAATTACACACAGGCAGGCACACACAGGCAGGCTGCTGTGTGTGG
TCTCTCACAGCACTCACCCACGAACCTCTTTGACGCTAGC
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Coding sequence (CDS) from alignment at C-linearis_contig97:583968..584407-

>mRNA_C-linearis_contig97.17113.1 ID=mRNA_C-linearis_contig97.17113.1|Name=mRNA_C-linearis_contig97.17113.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at C-linearis_contig97:583968..584407- (Chordaria linearis ClinC8C monoicous)
ATGGCATCTCCCGTGATGGAAGGAATGTTCTTGGCTCCTGCTGCCGCTGC
TGTGAAAGCTGTTGCTGTGAAAATGGCATCTCCCGTGATGGAAGGAATGT
TCTTGGCTCCTGCTGCCGCTGCTGTGAAAGCTGTTGCTGTGAAACTGTGT
CTCATCAGGGGGTTCCCGGCTCTGAGTCTTCGGTCCGCCCTGGTCTTCAA
CATTGTTATACTCCTGTGTCTCGTCAAGGCGCCGGCTCTGAGTCTCGGCA
GTCCCCTGGTCTTCAACATGTTGTTGTGCTCTCTCTGTAGATACCCTTCC
TCTCTCTTTATACACCTGCCGAGCGACTTGAATGGCGTCCCATCCCGTCG
CTCGAACTCGCTGCTGCTATCGACCCTCTCATGACTGTGTCTCATCAGGG
GGTTCCCGGCTCTGAGTCTTCGGTCCGCCCTGGTCTTCAACATTGTTATA
CTCCTGTGTCTCGTCAAGGCGCCGGCTCTGAGTCTCGGCAGTCCCCTGGT
CTTCAACATGTTGTTGTGCTCTCTCTGTAGATACCCTTCCTCTCTCTTTA
TACACCTGCCGAGCGACTTGAATGGCGTCCCATCCCGTCGCTCGAACTCG
CTGCTGCTATCGACCCTCTCATGA
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