Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | signal peptide |
Exons | 2 |
Model size | 424 |
Cds size | 312 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930828.0872695-UTR-C-linearis_contig97:583967..584050 | 1622930828.0872695-UTR-C-linearis_contig97:583967..584050 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 583968..584050 - |
1690881270.7095003-UTR-C-linearis_contig97:583967..584050 | 1690881270.7095003-UTR-C-linearis_contig97:583967..584050 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 583968..584050 - |
1622930828.171902-UTR-C-linearis_contig97:584378..584407 | 1622930828.171902-UTR-C-linearis_contig97:584378..584407 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 584379..584407 - |
1690881270.7466185-UTR-C-linearis_contig97:584378..584407 | 1690881270.7466185-UTR-C-linearis_contig97:584378..584407 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 584379..584407 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622930828.1335747-CDS-C-linearis_contig97:584050..584290 | 1622930828.1335747-CDS-C-linearis_contig97:584050..584290 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 584051..584290 - |
1690881270.7256625-CDS-C-linearis_contig97:584050..584290 | 1690881270.7256625-CDS-C-linearis_contig97:584050..584290 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 584051..584290 - |
1622930828.154104-CDS-C-linearis_contig97:584306..584378 | 1622930828.154104-CDS-C-linearis_contig97:584306..584378 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 584307..584378 - |
1690881270.7350605-CDS-C-linearis_contig97:584306..584378 | 1690881270.7350605-CDS-C-linearis_contig97:584306..584378 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 584307..584378 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17113.1 >prot_C-linearis_contig97.17113.1 ID=prot_C-linearis_contig97.17113.1|Name=mRNA_C-linearis_contig97.17113.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=104bp
MASPVMEGMFLAPAAAAVKAVAVKLCLIRGFPALSLRSALVFNIVILLCL VKAPALSLGSPLVFNMLLCSLCRYPSSLFIHLPSDLNGVPSRRSNSLLLS TLS* back to topmRNA from alignment at C-linearis_contig97:583968..584407- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig97.17113.1 ID=mRNA_C-linearis_contig97.17113.1|Name=mRNA_C-linearis_contig97.17113.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=440bp|location=Sequence derived from alignment at C-linearis_contig97:583968..584407- (Chordaria linearis ClinC8C monoicous) TGTAATGTCTTCATCGTCCGCTGACGTCGATGGCATCTCCCGTGATGGAA
GGAATGTTCTTGGCTCCTGCTGCCGCTGCTGTGAAAGCTGTTGCTGTGAA
AGCTGTTGCTGTGAAAGCTGTGTCTCATCAGGGGGTTCCCGGCTCTGAGT
CTTCGGTCCGCCCTGGTCTTCAACATTGTTATACTCCTGTGTCTCGTCAA
GGCGCCGGCTCTGAGTCTCGGCAGTCCCCTGGTCTTCAACATGTTGTTGT
GCTCTCTCTGTAGATACCCTTCCTCTCTCTTTATACACCTGCCGAGCGAC
TTGAATGGCGTCCCATCCCGTCGCTCGAACTCGCTGCTGCTATCGACCCT
CTCATGAATTACACACAGGCAGGCACACACAGGCAGGCTGCTGTGTGTGG
TCTCTCACAGCACTCACCCACGAACCTCTTTGACGCTAGC back to topCoding sequence (CDS) from alignment at C-linearis_contig97:583968..584407- >mRNA_C-linearis_contig97.17113.1 ID=mRNA_C-linearis_contig97.17113.1|Name=mRNA_C-linearis_contig97.17113.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at C-linearis_contig97:583968..584407- (Chordaria linearis ClinC8C monoicous) ATGGCATCTCCCGTGATGGAAGGAATGTTCTTGGCTCCTGCTGCCGCTGC TGTGAAAGCTGTTGCTGTGAAAATGGCATCTCCCGTGATGGAAGGAATGT TCTTGGCTCCTGCTGCCGCTGCTGTGAAAGCTGTTGCTGTGAAACTGTGT CTCATCAGGGGGTTCCCGGCTCTGAGTCTTCGGTCCGCCCTGGTCTTCAA CATTGTTATACTCCTGTGTCTCGTCAAGGCGCCGGCTCTGAGTCTCGGCA GTCCCCTGGTCTTCAACATGTTGTTGTGCTCTCTCTGTAGATACCCTTCC TCTCTCTTTATACACCTGCCGAGCGACTTGAATGGCGTCCCATCCCGTCG CTCGAACTCGCTGCTGCTATCGACCCTCTCATGACTGTGTCTCATCAGGG GGTTCCCGGCTCTGAGTCTTCGGTCCGCCCTGGTCTTCAACATTGTTATA CTCCTGTGTCTCGTCAAGGCGCCGGCTCTGAGTCTCGGCAGTCCCCTGGT CTTCAACATGTTGTTGTGCTCTCTCTGTAGATACCCTTCCTCTCTCTTTA TACACCTGCCGAGCGACTTGAATGGCGTCCCATCCCGTCGCTCGAACTCG CTGCTGCTATCGACCCTCTCATGA back to top
|