mRNA_C-linearis_contig97.17110.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE) HSP 1 Score: 409 bits (1052), Expect = 1.790e-132 Identity = 275/434 (63.36%), Postives = 299/434 (68.89%), Query Frame = 2 Query: 20 LTSSPEFEIECQPDEYKEVTVGYGTTLIALNHWRTTVGEASTYEWSFQVVRAES-----TFLYYFDYGEFGGDPYTPYLSGGAGSEVIATITAGDAAGNTDTCSFLMVLWPRGTPLPTDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAPXXXXXXXXXXXXXXXXTPEPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPVPAASTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPVQTKEPTLPPIAVSPPTAQPASPPADEDDD-ADFVEAGSKTNVGVTASAYDDRPGESAGDAGCGETGCLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMVDP 1303
L ++ +FEIEC PD+YKEV VG GT +I LN W+ TVGEA T WSF V+ A +LY F G+ G D YT L GGAG+EVIAT+TA DAAGNTD+CSFLM+LWP GTPLPTDE XXXX PEP XXXXXXXXXXXXXX TPVPAASTT XXXXXXXXXXXXXXXXXXXX IAVSP TAQP SPP +EDD+ A+FVEAGSKT VGVTA+AYDDRPGESAGD GCGE GCLPDLAHDGV GE D ESRWSCA+EIVPDGGQCEI+FTFDSPQDI DVQVAFWKGDERTRTLK+KINGD +GEYESYPGSTFNSFGIQENGVHTVTMES+ ID ++WISLLEVRFMVDP
Sbjct: 21 LPAAAQFEIECIPDQYKEVAVGSGTIMIRLNTWKATVGEAETAVWSFDVINAVDGSNVIDYLYPFHIGQSGSDLYTISLMGGAGTEVIATVTAFDAAGNTDSCSFLMMLWPEGTPLPTDEPVSTXXXX------------------------------------------PEPVAPXXXXXXXXXXXXXXGWVQ---------TPVPAASTTPEPVVIPPTAGPSTVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAVSPATAQPVSPPEEEDDNNAEFVEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGV-GEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFMVDP 402
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI) HSP 1 Score: 225 bits (573), Expect = 3.910e-66 Identity = 106/120 (88.33%), Postives = 112/120 (93.33%), Query Frame = 2 Query: 944 GCLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMVDP 1303
GCLPDLAHDGV GE D ESRWSCA+EIVPDGGQCEITFTFDSPQDI DVQVAFWKGDERTRTLK+KINGD +GEYESYPGSTFNSFGIQENGVHTV MES+ ID ++WISLLEVRFMVDP
Sbjct: 2 GCLPDLAHDGV-GEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVAMESVGIDADDWISLLEVRFMVDP 120
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE) HSP 1 Score: 190 bits (483), Expect = 1.940e-50 Identity = 90/158 (56.96%), Postives = 120/158 (75.95%), Query Frame = 2 Query: 830 DDDADFVEAGSKTNVGVTASAYDDRPGESAGDAGCGETGCLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMVDP 1303
D D + V A + T + +A+ +D+RPG+++GD GCG+ GCLP LA DG+ D ESRWSCA++IVPDGGQCEI FTF PQ++ +QV FWKG+ERTRTLK+KING+ GE++S+PGS + F + VHTVT+ES+ +D +EWISLLEV FMV+P
Sbjct: 186 DMDHELVNAATITAIAASATGFDERPGQASGDHGCGKYGCLPVLATDGITD--DVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSYFDVIAYDVHTVTLESLGLDTDEWISLLEVIFMVEP 341
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI) HSP 1 Score: 178 bits (451), Expect = 1.900e-47 Identity = 91/167 (54.49%), Postives = 113/167 (67.66%), Query Frame = 2 Query: 824 DEDD----DADFVEAGSKTNVGVTASAYDDRPGESAGDAGCGETG---CLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMVDP 1303
DEDD D VE G+KT+V V+A+A+D RPG S+GD GCGE G C P DG+ E AESRWSCA +IVP GG C+I + F PQDI D+QVAFWKGDER RTL++ +G +ESY GSTFN G+ G+ +V +ES+D+ ENEWISL+EV V P
Sbjct: 61 DEDDLLNIGTDAVEVGTKTDVSVSATAHDTRPGSSSGDVGCGEAGGNGCTPANTRDGISNE--AESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIQVAFWKGDERVRTLEVYFDGTLYRTHESYAGSTFNPLGVSATGISSVMLESVDLLENEWISLIEVLIFVSP 225
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI) HSP 1 Score: 163 bits (412), Expect = 9.090e-43 Identity = 82/155 (52.90%), Postives = 104/155 (67.10%), Query Frame = 2 Query: 848 VEAGSKTNVGVTASAYDDRPGESAGDAGCGETG---CLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMVDP 1303
VE G+K VGV+A+A+D RPG S+GD GCGE G C DG+ E ESRWSCA ++VPD G C+I FTF PQ IVD+QVAFWKG++RTRTL + +NG+ +ESY STFN+ G+ N TV +ES + +EWISL+EV V P
Sbjct: 21 VEVGTKIEVGVSATAHDTRPGNSSGDVGCGEVGGLGCTATNTRDGIFSE--IESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDSTFNTLGVTANEASTVMLESTALLSDEWISLIEVLIFVTP 173
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE) HSP 1 Score: 172 bits (437), Expect = 9.160e-42 Identity = 89/161 (55.28%), Postives = 110/161 (68.32%), Query Frame = 2 Query: 824 DEDD----DADFVEAGSKTNVGVTASAYDDRPGESAGDAGCGETG---CLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEV 1285
DEDD D VE G+KT+V V+A+AYD RPG S+GD GCGE G C P DG+ E ESRWSCA +IVP GG C+I + F PQDI D++VAFW GDER RTL++ +G +ESY GSTFNS G+ G+ TV +ES+D+ ENEWISL+EV
Sbjct: 467 DEDDLLTVGTDAVEVGTKTDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNE--TESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: D7FI81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI) HSP 1 Score: 164 bits (414), Expect = 2.420e-41 Identity = 82/152 (53.95%), Postives = 106/152 (69.74%), Query Frame = 2 Query: 851 EAGSKTNVGVTASAYDDRPGESAGDAGCGETG---CLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMV 1297
E G+ T V V+A+A+D RPG S+GD GCGETG C AHDG++ E ESRWSCA +VPD G C+I F+F PQDIVD+QVAFW+G+ERTRT+ + I+G+ +ESY STFN+ G+ TV +ES+D+ +EWISLLEV V
Sbjct: 158 EVGTMTEVNVSATAHDTRPGSSSGDVGCGETGGDGCAAIKAHDGIISE--IESRWSCATMLVPDEGPCQIEFSFADPQDIVDIQVAFWEGNERTRTVDIFIDGELTHTHESYADSTFNTLGVTATEASTVMLESVDLLSDEWISLLEVLIFV 307
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI) HSP 1 Score: 160 bits (405), Expect = 3.720e-40 Identity = 80/157 (50.96%), Postives = 108/157 (68.79%), Query Frame = 2 Query: 842 DFVEAGSKTNVGVTASAYDDRPGESAGDAGCGETG---CLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMVDP 1303
D VE G+KT V V+A+A+D R G S+G+ GCGE G C + A DG+ E ESRWSCA +++ D G C+I F+F PQ+IVD+QVAFWKG+ER RTL++ +NG+ +ESY STFN+ G+ N +TV +ES+ + NEWISL+EV V P
Sbjct: 152 DAVEVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTE--IESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTANEANTVMLESVSLLSNEWISLIEVLIFVTP 306
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: D7FI90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI90_ECTSI) HSP 1 Score: 155 bits (391), Expect = 6.570e-40 Identity = 80/157 (50.96%), Postives = 102/157 (64.97%), Query Frame = 2 Query: 842 DFVEAGSKTNVGVTASAYDDRPGESAGDAGCGETG---CLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMVDP 1303
D VE G+KT VGV+A+A+D RPG S D GCGE G C DG+V D ESRWSCA +VPD G C+I FTF PQ+IVD+QVAFW +ER TL++ +NG+ +ESY TFN+ G+ TV +ES+ + +EWISLLEV+ V P
Sbjct: 19 DAVEVGTKTEVGVSATAHDVRPGSSGNDVGCGEVGSLGCTATNTRDGIVS--DIESRWSCATSLVPDEGPCQIEFTFAEPQNIVDIQVAFWNDNERVSTLEVHVNGELTHTHESYD-DTFNTLGVTATEASTVMLESVALLSDEWISLLEVQIFVTP 172
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI) HSP 1 Score: 163 bits (412), Expect = 3.510e-39 Identity = 82/155 (52.90%), Postives = 107/155 (69.03%), Query Frame = 2 Query: 848 VEAGSKTNVGVTASAYDDRPGESAGDAGCGETG---CLPDLAHDGVVGEGDAESRWSCAKEIVPDGGQCEITFTFDSPQDIVDVQVAFWKGDERTRTLKMKINGDNVGEYESYPGSTFNSFGIQENGVHTVTMESIDIDENEWISLLEVRFMVDP 1303
VE G+KT VGV+++A+D RPG S+GDAGCGE G C DG+ E ESRWSCA ++V D G C+I FTF PQ I+D+QVAFWKG+ERTRTL++ ING+ +ESY +TFN+ G+ V TV +ES+ + +EWISL+EV V P
Sbjct: 363 VEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSE--IESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEVLIFVTP 515 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17110.1 >prot_C-linearis_contig97.17110.1 ID=prot_C-linearis_contig97.17110.1|Name=mRNA_C-linearis_contig97.17110.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=328bp MVLWPRGTPLPTDEPTPTPEPTPEPVTPTPEPTPEPTPEPTPEPVAPTPEback to top mRNA from alignment at C-linearis_contig97:501077..508024- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17110.1 ID=mRNA_C-linearis_contig97.17110.1|Name=mRNA_C-linearis_contig97.17110.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=6948bp|location=Sequence derived from alignment at C-linearis_contig97:501077..508024- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:501077..508024- >mRNA_C-linearis_contig97.17110.1 ID=mRNA_C-linearis_contig97.17110.1|Name=mRNA_C-linearis_contig97.17110.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at C-linearis_contig97:501077..508024- (Chordaria linearis ClinC8C monoicous)back to top |