mRNA_C-linearis_contig97.17108.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17108.1
Unique NamemRNA_C-linearis_contig97.17108.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:450030..451223 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size227
Cds size189
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17108.1prot_C-linearis_contig97.17108.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 450068..451223 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.9442647-UTR-C-linearis_contig97:450029..4500671622930827.9442647-UTR-C-linearis_contig97:450029..450067Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 450030..450067 -
1690881270.6767201-UTR-C-linearis_contig97:450029..4500671690881270.6767201-UTR-C-linearis_contig97:450029..450067Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 450030..450067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930827.9699678-CDS-C-linearis_contig97:450067..4501151622930827.9699678-CDS-C-linearis_contig97:450067..450115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 450068..450115 -
1690881270.6855872-CDS-C-linearis_contig97:450067..4501151690881270.6855872-CDS-C-linearis_contig97:450067..450115Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 450068..450115 -
1622930827.998926-CDS-C-linearis_contig97:451082..4512231622930827.998926-CDS-C-linearis_contig97:451082..451223Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 451083..451223 -
1690881270.6938343-CDS-C-linearis_contig97:451082..4512231690881270.6938343-CDS-C-linearis_contig97:451082..451223Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 451083..451223 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17108.1

>prot_C-linearis_contig97.17108.1 ID=prot_C-linearis_contig97.17108.1|Name=mRNA_C-linearis_contig97.17108.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=63bp
MREAWVQPLAHSRGVLKGELRVLLPRTQVATAGAPFRSRVFPILAFDLTP
AGAVLTPLKHRR*
back to top

mRNA from alignment at C-linearis_contig97:450030..451223-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17108.1 ID=mRNA_C-linearis_contig97.17108.1|Name=mRNA_C-linearis_contig97.17108.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1194bp|location=Sequence derived from alignment at C-linearis_contig97:450030..451223- (Chordaria linearis ClinC8C monoicous)
ATGCGTGAAGCCTGGGTCCAGCCCCTTGCGCACTCTCGTGGCGTGCTTAA
GGGTGAACTTCGCGTTCTTCTTCCCCGCACCCAAGTAGCCACCGCCGGTG
CCCCCTTCCGTTCCCGTGTTTTTCCCATCCTCGCCTTCGATGTTCAAAGC
AGACGAGAGGTGGATGAAGCACGGAGGTTTTCGACAAATAAAATCGCCGC
AACAAGGGCACTTCGTATATAATTAAAAGGTCCCATCAGAACTAATAACT
AACCTCGTTCTGGGAAAAAACTGCGAACCTCGGTCGGTTATTTGGGGCCG
AAAAATAAGATGGGGCCTTCATCCGTCAAGAAACAACAGCCCACCGCCAC
CTAGTTCAAACCATGCGCACAAGCAATCTCTGCCGATCGAAAACAGCTGG
GGGTGGGGGTGGGGGTGGGGCAGGGGGGCTACGGCAGGGGAGCCTACCAA
GCCACGACAAACCCTTGGCGCCGCTCAAGCCTACAGAGACAGATGCGCTG
CGTATTCGACGTGGCAGAGACTGGCGCCGTTGAATACGACAGACGCAAAA
CAAGCGGCAGAAAAAGACCCTACAGAATGTAAGGCGAAGGTGTAGCACAA
CTTTGCGTGTGATTGTGATCCAACGACGAACACAAGCGATTGCTAGATAA
CAAAACTGTCCACCACAACCACAACATCGGAGCTCACCTCCCTTCCGTCC
TGCACCGGCCGGCATCGGCAGACACGACACAGCAACAGCAACGGCAGCAG
CAACGGCGGCAGCGGCAGCGGCAGCAACAGCGACGGTGGCGGCAGTATGT
GAGGACGAGACAGAAAGAGGCGCCTTGTTTCCGTCGGTGCAAACAGGCCC
CGGCTCGGCACATTGGGTCAAGGAGGAGCAGGCCCGCCGGCACATCTACC
TAACGTTTCGAGCTCTCGCAGCCATCGGAAACGATGAGGCCTTGGTCCTA
CTTGACAACCCCCGCGAGCTGTCGCTGCCAAGTAGTCAACCTCGGGGCGG
AGGGGGGCCGGGGCTTTTGGGCGGAGTGGCGACGTGAAGCAAACGATCGG
CGCCAGCACAAAGCAATGCTACCGAGGGAGTCATCCGAGGTCGATCTTAA
ATAGACAGCTCACCCCCGCTGGCGCTGTCCTTACGCCGCTGAAGCATCGC
CGCTGACTGGTCGGCCGTCGGCGCCTGGCTTCCTTGCCACACGG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig97:450030..451223-

>mRNA_C-linearis_contig97.17108.1 ID=mRNA_C-linearis_contig97.17108.1|Name=mRNA_C-linearis_contig97.17108.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at C-linearis_contig97:450030..451223- (Chordaria linearis ClinC8C monoicous)
ATGCGTGAAGCCTGGGTCCAGCCCCTTGCGCACTCTCGTGGCGTGCTTAA
GGGTGAACTTCGCGTTCTTCTTCCCCGCACCCAAGTAGCCACCGCCGGTG
CCCCCTTCCGTTCCCGTGTTTTTCCCATCCTCGCCTTCGATATGCGTGAA
GCCTGGGTCCAGCCCCTTGCGCACTCTCGTGGCGTGCTTAAGGGTGAACT
TCGCGTTCTTCTTCCCCGCACCCAAGTAGCCACCGCCGGTGCCCCCTTCC
GTTCCCGTGTTTTTCCCATCCTCGCCTTCGATCTCACCCCCGCTGGCGCT
GTCCTTACGCCGCTGAAGCATCGCCGCTGACTCACCCCCGCTGGCGCTGT
CCTTACGCCGCTGAAGCATCGCCGCTGA
back to top