Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 2 |
| Model size | 227 |
| Cds size | 189 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930827.9442647-UTR-C-linearis_contig97:450029..450067 | 1622930827.9442647-UTR-C-linearis_contig97:450029..450067 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 450030..450067 - |
| 1690881270.6767201-UTR-C-linearis_contig97:450029..450067 | 1690881270.6767201-UTR-C-linearis_contig97:450029..450067 | Chordaria linearis ClinC8C monoicous | UTR | C-linearis_contig97 450030..450067 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622930827.9699678-CDS-C-linearis_contig97:450067..450115 | 1622930827.9699678-CDS-C-linearis_contig97:450067..450115 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 450068..450115 - |
| 1690881270.6855872-CDS-C-linearis_contig97:450067..450115 | 1690881270.6855872-CDS-C-linearis_contig97:450067..450115 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 450068..450115 - |
| 1622930827.998926-CDS-C-linearis_contig97:451082..451223 | 1622930827.998926-CDS-C-linearis_contig97:451082..451223 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 451083..451223 - |
| 1690881270.6938343-CDS-C-linearis_contig97:451082..451223 | 1690881270.6938343-CDS-C-linearis_contig97:451082..451223 | Chordaria linearis ClinC8C monoicous | CDS | C-linearis_contig97 451083..451223 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17108.1 >prot_C-linearis_contig97.17108.1 ID=prot_C-linearis_contig97.17108.1|Name=mRNA_C-linearis_contig97.17108.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=63bp
MREAWVQPLAHSRGVLKGELRVLLPRTQVATAGAPFRSRVFPILAFDLTP
AGAVLTPLKHRR* back to topmRNA from alignment at C-linearis_contig97:450030..451223- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-linearis_contig97.17108.1 ID=mRNA_C-linearis_contig97.17108.1|Name=mRNA_C-linearis_contig97.17108.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1194bp|location=Sequence derived from alignment at C-linearis_contig97:450030..451223- (Chordaria linearis ClinC8C monoicous)
ATGCGTGAAGCCTGGGTCCAGCCCCTTGCGCACTCTCGTGGCGTGCTTAA
GGGTGAACTTCGCGTTCTTCTTCCCCGCACCCAAGTAGCCACCGCCGGTG
CCCCCTTCCGTTCCCGTGTTTTTCCCATCCTCGCCTTCGATGTTCAAAGC
AGACGAGAGGTGGATGAAGCACGGAGGTTTTCGACAAATAAAATCGCCGC
AACAAGGGCACTTCGTATATAATTAAAAGGTCCCATCAGAACTAATAACT
AACCTCGTTCTGGGAAAAAACTGCGAACCTCGGTCGGTTATTTGGGGCCG
AAAAATAAGATGGGGCCTTCATCCGTCAAGAAACAACAGCCCACCGCCAC
CTAGTTCAAACCATGCGCACAAGCAATCTCTGCCGATCGAAAACAGCTGG
GGGTGGGGGTGGGGGTGGGGCAGGGGGGCTACGGCAGGGGAGCCTACCAA
GCCACGACAAACCCTTGGCGCCGCTCAAGCCTACAGAGACAGATGCGCTG
CGTATTCGACGTGGCAGAGACTGGCGCCGTTGAATACGACAGACGCAAAA
CAAGCGGCAGAAAAAGACCCTACAGAATGTAAGGCGAAGGTGTAGCACAA
CTTTGCGTGTGATTGTGATCCAACGACGAACACAAGCGATTGCTAGATAA
CAAAACTGTCCACCACAACCACAACATCGGAGCTCACCTCCCTTCCGTCC
TGCACCGGCCGGCATCGGCAGACACGACACAGCAACAGCAACGGCAGCAG
CAACGGCGGCAGCGGCAGCGGCAGCAACAGCGACGGTGGCGGCAGTATGT
GAGGACGAGACAGAAAGAGGCGCCTTGTTTCCGTCGGTGCAAACAGGCCC
CGGCTCGGCACATTGGGTCAAGGAGGAGCAGGCCCGCCGGCACATCTACC
TAACGTTTCGAGCTCTCGCAGCCATCGGAAACGATGAGGCCTTGGTCCTA
CTTGACAACCCCCGCGAGCTGTCGCTGCCAAGTAGTCAACCTCGGGGCGG
AGGGGGGCCGGGGCTTTTGGGCGGAGTGGCGACGTGAAGCAAACGATCGG
CGCCAGCACAAAGCAATGCTACCGAGGGAGTCATCCGAGGTCGATCTTAA
ATAGACAGCTCACCCCCGCTGGCGCTGTCCTTACGCCGCTGAAGCATCGC
CGCTGACTGGTCGGCCGTCGGCGCCTGGCTTCCTTGCCACACGG back to topCoding sequence (CDS) from alignment at C-linearis_contig97:450030..451223- >mRNA_C-linearis_contig97.17108.1 ID=mRNA_C-linearis_contig97.17108.1|Name=mRNA_C-linearis_contig97.17108.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at C-linearis_contig97:450030..451223- (Chordaria linearis ClinC8C monoicous)
ATGCGTGAAGCCTGGGTCCAGCCCCTTGCGCACTCTCGTGGCGTGCTTAA
GGGTGAACTTCGCGTTCTTCTTCCCCGCACCCAAGTAGCCACCGCCGGTG
CCCCCTTCCGTTCCCGTGTTTTTCCCATCCTCGCCTTCGATATGCGTGAA
GCCTGGGTCCAGCCCCTTGCGCACTCTCGTGGCGTGCTTAAGGGTGAACT
TCGCGTTCTTCTTCCCCGCACCCAAGTAGCCACCGCCGGTGCCCCCTTCC
GTTCCCGTGTTTTTCCCATCCTCGCCTTCGATCTCACCCCCGCTGGCGCT
GTCCTTACGCCGCTGAAGCATCGCCGCTGACTCACCCCCGCTGGCGCTGT
CCTTACGCCGCTGAAGCATCGCCGCTGA back to top
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