mRNA_C-linearis_contig97.17107.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17107.1
Unique NamemRNA_C-linearis_contig97.17107.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig97.17107.1 vs. uniprot
Match: A0A6H5L509_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L509_9PHAE)

HSP 1 Score: 451 bits (1161), Expect = 3.980e-150
Identity = 270/478 (56.49%), Postives = 299/478 (62.55%), Query Frame = 1 
Query:    1 MNERLKDANTRDEIAEKVLSVLAEVPGSDMELKAALKRACREVARTLLGAEELPAAVSPFFLDARLDPPERGASLALVGFMCPAHEDNVSFSGESENRTIALHRLIESAVVSQGHDRALSINANAVRCLKSGDGSYAKPCAHDENVDSVCQLLRAIYFAALHAYGVKITRIVQCSGSEELARGPFHLGPWSQLLPGAGLLLSLSTTPFFSAPHLTATKVNSCYHEALARRVGAQVVQARLGEKRPRLSLAGCAVFDSVCDGTGEAAFRVCPEDIGPPTPTSGSAASEQAISNPRSSLEESLCDRLGSREAATSVVSRLFTRPSDDEAERSSKAAREANATAFEERVTDRGGVKNSGVAGSLRSGHVVVDGWMPDVCDSNRLIER-PGSRGQSVAHTWHMNSFVLGRAGDGSSAPQGEAARPGRDDLLDDDQARARLDEA-LLLNRQGVTDGAGRKQAGYNMPSRRMEPVGRAVCKDTL 1428
            M  +L+DA  R EI+  V  VL E   S  ELK ALK AC +VAR LL +E+LP  VSPFFL+   D PERGAS ALVGFMCPAHEDNV FSGES NRTI LHRLIESAV SQGHDRA+ +N NAVRCLKSGDGS+A P A DENVDSV QLLRA+YFA LHAYGVKITRIVQC                                                              +AR GEK PRLS AG  VFDSV  GT EAAFRVCPEDIGPPTP+SGSAASEQA++N RS LE SLC  L                           AA+ AN   F   V DR GVK+SGVAG L SG  +VD W PDVCDS RLIER PG R Q VAH+ HMNSF+L  A  G+S+P G+A RP RDDLL D QAR RL +  LLL+RQGVTDG G++Q GY MPS+R+E VGRAVCK TL
Sbjct:    1 MRTKLEDAEIRAEISRAVKPVLLEPRRSAKELKGALKMACGKVARILLDSEKLPPQVSPFFLNDCFDQPERGASYALVGFMCPAHEDNVGFSGESGNRTIKLHRLIESAVASQGHDRAVCVNTNAVRCLKSGDGSHANPFARDENVDSVSQLLRAMYFAGLHAYGVKITRIVQC--------------------------------------------------------------RARSGEKGPRLSSAGRVVFDSVRAGTTEAAFRVCPEDIGPPTPSSGSAASEQAVTNLRSMLEASLCGSLA--------------------------AAKNANDARFRHVVPDRDGVKHSGVAGGLASGVAIVDTWAPDVCDSGRLIERGPGPRDQRVAHSLHMNSFLLVWAHGGASSPLGKATRPSRDDLLGDKQARRRLGKPPLLLDRQGVTDGGGKEQTGYRMPSKRVEAVGRAVCKATL 390
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BLAST of mRNA_C-linearis_contig97.17107.1 vs. uniprot
Match: A0A6H5JPV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPV0_9PHAE)

HSP 1 Score: 260 bits (664), Expect = 3.080e-78
Identity = 151/299 (50.50%), Postives = 186/299 (62.21%), Query Frame = 1 
Query:    1 MNERLKDANTRDEIAEKVLSVLAEVPGSDMELKAALKRACREVARTLLGAEELPAAVSPFFLDARLDPPERGASLALVGFMCPAHEDNVSFSGESENRTIALHRLIESAVVSQGHDRALSINANAVRCLKSGDGSYAKPCAHDENVDSVCQLLRAIYFAALHAYGVKITRIVQCSGSEELARGPFHLGPWSQLLPGAGLLLSLSTTPFFSAPHLTATKVNSCYHEALARRVGAQVVQARLGEKRPRLSLAGCAVFDSVCDGTGEAAFRVCPEDIGPPTPTSGSAASEQAISNPRSSLEE 897
            +N RL+D +T  ++  +V  VL E+ GS +EL+ ALK    +VAR L+G EELP  +SPFFLD   + PE G S AL+G+ CPAHEDNVS  GE+ENR I L      A    G +R L ++                            + +RA+YFAAL A  VK+TRIVQ  GSE+LA+GPFHL PW +  P AG LL+L TTPFFS+PH TATK +  YH  LA +  AQ+ +ARLGE  PRLS  G A FDSV  GT  A FR CPE I PPT TSGS AS+QA+SN RSSL+E
Sbjct:  146 LNNRLEDVSTIADVLREVEEVLGELSGSKIELEPALKEMVGKVARVLMGVEELPKEMSPFFLDPLFNAPEWGESCALMGYTCPAHEDNVSLGGETENRIITLGCGGGGARQVVGRERQLLLS----------------------------EFVRALYFAALDANDVKVTRIVQSCGSEDLAKGPFHLAPWLERFPVAGHLLNLPTTPFFSSPHRTATKTSKSYHPGLAAKAAAQIFRARLGEAGPRLSDDGRAFFDSVNAGTAAAGFRDCPEYIAPPTRTSGSTASKQAVSNLRSSLQE 416
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L509_9PHAE3.980e-15056.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPV0_9PHAE3.080e-7850.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:446534..447961 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1430
Cds size1428
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.5991623-CDS-C-linearis_contig97:446533..4479611622930828.5991623-CDS-C-linearis_contig97:446533..447961Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 446534..447961 +
1690881270.8989599-CDS-C-linearis_contig97:446533..4479611690881270.8989599-CDS-C-linearis_contig97:446533..447961Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 446534..447961 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17107.1prot_C-linearis_contig97.17107.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 446534..447961 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17107.1

>prot_C-linearis_contig97.17107.1 ID=prot_C-linearis_contig97.17107.1|Name=mRNA_C-linearis_contig97.17107.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=476bp
MNERLKDANTRDEIAEKVLSVLAEVPGSDMELKAALKRACREVARTLLGA
EELPAAVSPFFLDARLDPPERGASLALVGFMCPAHEDNVSFSGESENRTI
ALHRLIESAVVSQGHDRALSINANAVRCLKSGDGSYAKPCAHDENVDSVC
QLLRAIYFAALHAYGVKITRIVQCSGSEELARGPFHLGPWSQLLPGAGLL
LSLSTTPFFSAPHLTATKVNSCYHEALARRVGAQVVQARLGEKRPRLSLA
GCAVFDSVCDGTGEAAFRVCPEDIGPPTPTSGSAASEQAISNPRSSLEES
LCDRLGSREAATSVVSRLFTRPSDDEAERSSKAAREANATAFEERVTDRG
GVKNSGVAGSLRSGHVVVDGWMPDVCDSNRLIERPGSRGQSVAHTWHMNS
FVLGRAGDGSSAPQGEAARPGRDDLLDDDQARARLDEALLLNRQGVTDGA
GRKQAGYNMPSRRMEPVGRAVCKDTL
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mRNA from alignment at C-linearis_contig97:446534..447961+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17107.1 ID=mRNA_C-linearis_contig97.17107.1|Name=mRNA_C-linearis_contig97.17107.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1428bp|location=Sequence derived from alignment at C-linearis_contig97:446534..447961+ (Chordaria linearis ClinC8C monoicous)
ATGAACGAACGGCTGAAAGATGCCAACACCCGCGACGAGATTGCAGAGAA
AGTGCTGTCGGTGCTAGCTGAGGTGCCTGGATCGGACATGGAACTGAAGG
CCGCGCTCAAGAGGGCGTGCCGAGAGGTTGCTCGGACACTCCTGGGTGCG
GAGGAGCTGCCGGCGGCGGTGTCCCCTTTCTTCCTCGACGCCCGCCTCGA
CCCCCCGGAGCGGGGTGCCTCGCTCGCCCTCGTGGGCTTCATGTGCCCCG
CCCACGAAGATAATGTCAGCTTCTCCGGAGAGAGCGAAAACCGGACCATT
GCGCTCCACCGCCTGATCGAGTCTGCGGTGGTGAGCCAAGGCCACGACCG
GGCGCTCAGCATCAATGCGAACGCCGTACGCTGCCTCAAGAGTGGCGACG
GCAGCTACGCCAAGCCGTGCGCTCACGACGAGAACGTCGACAGCGTGTGC
CAACTTCTTCGGGCCATCTACTTCGCGGCTCTCCATGCGTACGGGGTGAA
GATCACGAGAATCGTCCAGTGCAGCGGGAGCGAGGAGCTGGCAAGAGGGC
CGTTCCACCTGGGACCCTGGTCACAGCTTCTTCCGGGCGCGGGGCTCCTG
CTTTCTTTGTCCACCACCCCGTTCTTCTCGGCGCCGCACCTGACGGCGAC
CAAGGTCAACTCCTGCTACCACGAGGCACTCGCCCGGAGGGTTGGCGCGC
AGGTCGTTCAGGCGCGGTTGGGCGAGAAGCGGCCGCGGCTTTCTCTCGCC
GGGTGTGCAGTTTTCGACTCCGTGTGTGACGGAACTGGTGAGGCAGCCTT
CCGCGTCTGCCCAGAGGACATCGGTCCCCCCACCCCCACCTCCGGGTCCG
CTGCGTCGGAGCAGGCCATCAGCAACCCGAGGTCAAGCCTCGAGGAGAGC
CTCTGCGACAGGCTCGGTTCGCGAGAGGCGGCGACATCGGTTGTGTCTCG
TCTCTTCACCCGACCGAGCGATGACGAGGCCGAGAGATCGTCAAAGGCCG
CGAGAGAGGCAAACGCCACGGCGTTCGAAGAACGAGTCACCGACCGCGGC
GGCGTCAAGAATAGCGGGGTGGCTGGCAGCTTGAGGTCGGGACATGTTGT
GGTCGACGGGTGGATGCCGGACGTCTGCGACAGCAACCGTCTGATCGAGC
GGCCGGGGTCACGTGGCCAGAGTGTAGCACACACCTGGCACATGAACTCT
TTCGTCCTCGGGCGGGCTGGCGATGGATCGTCTGCCCCGCAGGGGGAAGC
CGCTCGTCCCGGCCGGGACGACCTGTTAGATGACGATCAAGCCCGCGCGA
GGTTGGACGAGGCGCTGCTGCTCAACAGACAGGGAGTGACGGACGGAGCA
GGACGAAAGCAGGCCGGGTACAACATGCCCAGCAGGCGCATGGAGCCCGT
GGGCAGGGCCGTCTGCAAGGACACCTTG
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Coding sequence (CDS) from alignment at C-linearis_contig97:446534..447961+

>mRNA_C-linearis_contig97.17107.1 ID=mRNA_C-linearis_contig97.17107.1|Name=mRNA_C-linearis_contig97.17107.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2856bp|location=Sequence derived from alignment at C-linearis_contig97:446534..447961+ (Chordaria linearis ClinC8C monoicous)
ATGAACGAACGGCTGAAAGATGCCAACACCCGCGACGAGATTGCAGAGAA
AGTGCTGTCGGTGCTAGCTGAGGTGCCTGGATCGGACATGGAACTGAAGG
CCGCGCTCAAGAGGGCGTGCCGAGAGGTTGCTCGGACACTCCTGGGTGCG
GAGGAGCTGCCGGCGGCGGTGTCCCCTTTCTTCCTCGACGCCCGCCTCGA
CCCCCCGGAGCGGGGTGCCTCGCTCGCCCTCGTGGGCTTCATGTGCCCCG
CCCACGAAGATAATGTCAGCTTCTCCGGAGAGAGCGAAAACCGGACCATT
GCGCTCCACCGCCTGATCGAGTCTGCGGTGGTGAGCCAAGGCCACGACCG
GGCGCTCAGCATCAATGCGAACGCCGTACGCTGCCTCAAGAGTGGCGACG
GCAGCTACGCCAAGCCGTGCGCTCACGACGAGAACGTCGACAGCGTGTGC
CAACTTCTTCGGGCCATCTACTTCGCGGCTCTCCATGCGTACGGGGTGAA
GATCACGAGAATCGTCCAGTGCAGCGGGAGCGAGGAGCTGGCAAGAGGGC
CGTTCCACCTGGGACCCTGGTCACAGCTTCTTCCGGGCGCGGGGCTCCTG
CTTTCTTTGTCCACCACCCCGTTCTTCTCGGCGCCGCACCTGACGGCGAC
CAAGGTCAACTCCTGCTACCACGAGGCACTCGCCCGGAGGGTTGGCGCGC
AGGTCGTTCAGGCGCGGTTGGGCGAGAAGCGGCCGCGGCTTTCTCTCGCC
GGGTGTGCAGTTTTCGACTCCGTGTGTGACGGAACTGGTGAGGCAGCCTT
CCGCGTCTGCCCAGAGGACATCGGTCCCCCCACCCCCACCTCCGGGTCCG
CTGCGTCGGAGCAGGCCATCAGCAACCCGAGGTCAAGCCTCGAGGAGAGC
CTCTGCGACAGGCTCGGTTCGCGAGAGGCGGCGACATCGGTTGTGTCTCG
TCTCTTCACCCGACCGAGCGATGACGAGGCCGAGAGATCGTCAAAGGCCG
CGAGAGAGGCAAACGCCACGGCGTTCGAAGAACGAGTCACCGACCGCGGC
GGCGTCAAGAATAGCGGGGTGGCTGGCAGCTTGAGGTCGGGACATGTTGT
GGTCGACGGGTGGATGCCGGACGTCTGCGACAGCAACCGTCTGATCGAGC
GGCCGGGGTCACGTGGCCAGAGTGTAGCACACACCTGGCACATGAACTCT
TTCGTCCTCGGGCGGGCTGGCGATGGATCGTCTGCCCCGCAGGGGGAAGC
CGCTCGTCCCGGCCGGGACGACCTGTTAGATGACGATCAAGCCCGCGCGA
GGTTGGACGAGGCGCTGCTGCTCAACAGACAGGGAGTGACGGACGGAGCA
GGACGAAAGCAGGCCGGGTACAACATGCCCAGCAGGCGCATGGAGCCCGT
GGGCAGGGCCGTCTGCAAGGACACCTTGATGAACGAACGGCTGAAAGATG
CCAACACCCGCGACGAGATTGCAGAGAAAGTGCTGTCGGTGCTAGCTGAG
GTGCCTGGATCGGACATGGAACTGAAGGCCGCGCTCAAGAGGGCGTGCCG
AGAGGTTGCTCGGACACTCCTGGGTGCGGAGGAGCTGCCGGCGGCGGTGT
CCCCTTTCTTCCTCGACGCCCGCCTCGACCCCCCGGAGCGGGGTGCCTCG
CTCGCCCTCGTGGGCTTCATGTGCCCCGCCCACGAAGATAATGTCAGCTT
CTCCGGAGAGAGCGAAAACCGGACCATTGCGCTCCACCGCCTGATCGAGT
CTGCGGTGGTGAGCCAAGGCCACGACCGGGCGCTCAGCATCAATGCGAAC
GCCGTACGCTGCCTCAAGAGTGGCGACGGCAGCTACGCCAAGCCGTGCGC
TCACGACGAGAACGTCGACAGCGTGTGCCAACTTCTTCGGGCCATCTACT
TCGCGGCTCTCCATGCGTACGGGGTGAAGATCACGAGAATCGTCCAGTGC
AGCGGGAGCGAGGAGCTGGCAAGAGGGCCGTTCCACCTGGGACCCTGGTC
ACAGCTTCTTCCGGGCGCGGGGCTCCTGCTTTCTTTGTCCACCACCCCGT
TCTTCTCGGCGCCGCACCTGACGGCGACCAAGGTCAACTCCTGCTACCAC
GAGGCACTCGCCCGGAGGGTTGGCGCGCAGGTCGTTCAGGCGCGGTTGGG
CGAGAAGCGGCCGCGGCTTTCTCTCGCCGGGTGTGCAGTTTTCGACTCCG
TGTGTGACGGAACTGGTGAGGCAGCCTTCCGCGTCTGCCCAGAGGACATC
GGTCCCCCCACCCCCACCTCCGGGTCCGCTGCGTCGGAGCAGGCCATCAG
CAACCCGAGGTCAAGCCTCGAGGAGAGCCTCTGCGACAGGCTCGGTTCGC
GAGAGGCGGCGACATCGGTTGTGTCTCGTCTCTTCACCCGACCGAGCGAT
GACGAGGCCGAGAGATCGTCAAAGGCCGCGAGAGAGGCAAACGCCACGGC
GTTCGAAGAACGAGTCACCGACCGCGGCGGCGTCAAGAATAGCGGGGTGG
CTGGCAGCTTGAGGTCGGGACATGTTGTGGTCGACGGGTGGATGCCGGAC
GTCTGCGACAGCAACCGTCTGATCGAGCGGCCGGGGTCACGTGGCCAGAG
TGTAGCACACACCTGGCACATGAACTCTTTCGTCCTCGGGCGGGCTGGCG
ATGGATCGTCTGCCCCGCAGGGGGAAGCCGCTCGTCCCGGCCGGGACGAC
CTGTTAGATGACGATCAAGCCCGCGCGAGGTTGGACGAGGCGCTGCTGCT
CAACAGACAGGGAGTGACGGACGGAGCAGGACGAAAGCAGGCCGGGTACA
ACATGCCCAGCAGGCGCATGGAGCCCGTGGGCAGGGCCGTCTGCAAGGAC
ACCTTG
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