mRNA_C-linearis_contig97.17103.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17103.1
Unique NamemRNA_C-linearis_contig97.17103.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig97.17103.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 442 bits (1136), Expect = 4.000e-156
Identity = 214/237 (90.30%), Postives = 225/237 (94.94%), Query Frame = 1 
Query:    1 ADKVPSDPNELQRLEREYYERAMERNKRKRQEDIDRLTKLRHNLRDLPKQRQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVERDQMQVAIKTDESFGAITGVFPGDVDATSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNAETIELEIPVPGDVTKRKTMLELDPAGDRMHLSFKNRPDFEPLEGKFKDLISPLDSVWMLGERAYL 711
            A ++P DPNELQRLEREYYERA +RN RKRQEDIDRLT+LRHNLRDLP QRQCHRYRWTQTETTFDVEIPMLKAC DEDLYLVVE+DQMQVAIKTDESFGAITGVFPGDVDA SCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGE+ESPTIRFKGETPRYSWKQNAETIEL+IPVP DVTKRKT L+LDPAGDR+H+SF NRPDFEPLEGKFK LISPLDSVWMLGE A+L
Sbjct:    5 AQRIPEDPNELQRLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGELAFL 241
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BLAST of mRNA_C-linearis_contig97.17103.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.050e-35
Identity = 71/203 (34.98%), Postives = 108/203 (53.20%), Query Frame = 1 
Query:  136 DLPKQRQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVERDQMQVAIKTDESFGAITGVFPGDVDATSCSFRIHSRFN-EPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNAETIELEIPVPGDVTKRKTMLELDPAGD--------------RMHLSFKNRPDFEPLEGKFKDLISPLDSVWMLGE 699
            ++P QR+CH+YRW QT     VE+P+ +AC  EDL  V+    MQ++I++D +F  + G FPG VD  + ++ +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y+W Q    I++   VP   T   T ++    G               R+ LS +  P+    E +F+  I   D  WML E
Sbjct:   43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDE 245
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL06_ECTSI4.000e-15690.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLX2_9STRA1.050e-3534.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:399038..401371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-11_006260.1
Exons5
Model size714
Cds size714
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17103.1prot_C-linearis_contig97.17103.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 399038..401371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930835.8665864-CDS-C-linearis_contig97:399037..3990731622930835.8665864-CDS-C-linearis_contig97:399037..399073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 399038..399073 +
1690881274.5265007-CDS-C-linearis_contig97:399037..3990731690881274.5265007-CDS-C-linearis_contig97:399037..399073Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 399038..399073 +
1622930835.8816237-CDS-C-linearis_contig97:399342..3996151622930835.8816237-CDS-C-linearis_contig97:399342..399615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 399343..399615 +
1690881274.5400558-CDS-C-linearis_contig97:399342..3996151690881274.5400558-CDS-C-linearis_contig97:399342..399615Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 399343..399615 +
1622930835.8953934-CDS-C-linearis_contig97:400006..4001121622930835.8953934-CDS-C-linearis_contig97:400006..400112Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 400007..400112 +
1690881274.5508685-CDS-C-linearis_contig97:400006..4001121690881274.5508685-CDS-C-linearis_contig97:400006..400112Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 400007..400112 +
1622930835.9080985-CDS-C-linearis_contig97:400858..4009711622930835.9080985-CDS-C-linearis_contig97:400858..400971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 400859..400971 +
1690881274.561924-CDS-C-linearis_contig97:400858..4009711690881274.561924-CDS-C-linearis_contig97:400858..400971Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 400859..400971 +
1622930835.9272764-CDS-C-linearis_contig97:401185..4013711622930835.9272764-CDS-C-linearis_contig97:401185..401371Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 401186..401371 +
1690881274.5739517-CDS-C-linearis_contig97:401185..4013711690881274.5739517-CDS-C-linearis_contig97:401185..401371Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 401186..401371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17103.1

>prot_C-linearis_contig97.17103.1 ID=prot_C-linearis_contig97.17103.1|Name=mRNA_C-linearis_contig97.17103.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=238bp
ADKVPSDPNELQRLEREYYERAMERNKRKRQEDIDRLTKLRHNLRDLPKQ
RQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVERDQMQVAIKTDESFG
AITGVFPGDVDATSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQG
EKESPTIRFKGETPRYSWKQNAETIELEIPVPGDVTKRKTMLELDPAGDR
MHLSFKNRPDFEPLEGKFKDLISPLDSVWMLGERAYL*
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mRNA from alignment at C-linearis_contig97:399038..401371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17103.1 ID=mRNA_C-linearis_contig97.17103.1|Name=mRNA_C-linearis_contig97.17103.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2334bp|location=Sequence derived from alignment at C-linearis_contig97:399038..401371+ (Chordaria linearis ClinC8C monoicous)
GCCGACAAGGTTCCGAGCGATCCCAATGAACTACAGGTGGGCGAGATATG
AGCGTGTTTCACCTGCGGGCGAGGAGCATACCGCATAACTCGTGAACTTG
CAGCTTGGACACCTCGACGAGCGGTTGGCGTGGCCCCGTGTTGACCTTGA
ACGTCAACTTGGCTGGTTCATTGAACGCTGTTGCAGATAGCGCTGCACTG
CAGCGTCAGCGATGATGCCACCAATACTATACACGGCGCTTGTCGGTACT
ACTGCTGTGCGTTGTTGTTGGTCATCCCCCTCCTTCGCCAATCCTATGAT
GCCAGAGGTTGGAACGAGAGTACTACGAAAGGGCCATGGAGCGCAACAAG
CGGAAGCGTCAGGAGGACATCGACAGGCTCACGAAGCTCAGGCACAACCT
CAGAGACCTGCCCAAGCAGCGCCAGTGTCACCGCTACCGGTGGACCCAGA
CGGAGACCACGTTCGACGTCGAGATTCCTATGCTCAAGGCCTGCACCGAC
GAGGACCTGTACCTGGTGGTGGAGAGGGATCAGATGCAGGTTGCCATCAA
GACGGATGAGTCGTTCGGAGCCATCACGGTGGGTCCATGTGTTCATATGT
TCATGTGCTCATGCACAGGGTGTGTAGCAGAGTGTGAAGGACTGTTGTGC
GGTCAGGGGGGTTCGTGCACATGCCAAGTAGGGATGGATATGCGTGGGGA
AGTGTTTTTTGCCTCTGCGGTAGGTTCTAGCTTGGTCTTTGCAACGTAAG
TAGATGCGTGAGCAGAGGAAGTACACGTACCGTCTTTTGTTTGTAGTCTT
GTCTAGTCTTTTTTTCGTCTTCGTTTATAACTATGCTTGTTCACGGCGGC
ACAAGTAGTGCCGAACAGTGCCGCTTATCTAACTTGGGCGTTGTGCCTGT
GTTTTCATATTGCCATATTGCTTTATTGCCTCGCCCCAACGACGACTTTT
TTTTTTTTTTTTTTCTCAGGGTGTTTTCCCGGGTGATGTGGATGCCACAA
GTTGCAGCTTTCGGATCCACAGTCGTTTCAACGAGCCCTACATCCACCTA
GAAATTGTCAAGTTGACCGCACCAGGTGAGTCAAAAGGAACGACTTTCTT
CCTTCATGCAGTTCTCTTCCAAAAGCTCCAGTTGCAAAAATGCGTACCAT
ACAGCAGTAGTAGTACTGCAAGTCGTCTCAACGAATGTTCAAGCTGCGTC
CAGTAATGTTTTCGAAACGTTCACACAATGGAAGATGTTCGTTAGATGGG
CTTATCCACTAGACCACTCAGTCAGCCTCCTCCATCTAACGAACAAAATA
TATGCTTTGGGATTCGATCCCATCTCTTCAGGTGCAGTGATCTCCGGGGG
GGCGCCCCCCCTCGCCAACGCTGCCTAGTGGTTGGGGACGACTCTATACG
CCCTCTCTAGTGTGCCATCCAACGCGCCTGTTTTTTCCTTCATGCCGGAA
AAAAAGACGACATCTGATGAGATTCGAACTCCCGGCGTATCCTTCTCGTT
AGATGGACTTATCCACTAGACCACTCAGTCAGCGTCTGATGAGATTCGAA
CTCCCGGCGTATCCTTCTCGTTAGATGGACTTATCCACTAGACCACTCAG
TCAGCGGCTGACTGAGTGGTCTAGTGGATAAGTCCCTCTAACGAACAGAA
GACATGCCAACACACTTTGGTTTAACCATGCCGTGTCATGGACTTGTGGT
CGTGTTTCATCCCTCGGCTTATCTTTTATCTGCGGCCCAACATGTGCTGT
CTCGTAGTCACATCAACCTTCGTTACGCTTTCCGTGCGGGTTGGTAACTT
GTTCATCTTCATCTTCATAAGGGATGTACGAGTTTTGGCACGAGCTGCTG
CAGGGTGAGAAAGAGAGCCCTACCATCCGTTTCAAGGGGGAAACGCCACG
CTACAGCTGGAAGCAGAATGCGGAAACAATAGAGGTCAGTCGGTGCCAGC
GTATGTACGTCAGTCTCAGCTTGGCCCAGAAAGGGTGCCTGGTATATGCT
GCAGATGAGTACGGCACTCCGCCTACACTCGTTTTTTTGTGTACGCTCAT
GTTGTTGCCAGCATGCGTGCACGAGAGCTTTGGATCGACGCTCAACACTA
CAACCGTGTGGCACTCGCTGTTTTTCGTTTCTTTTCGTTTTCATTCAGTT
GGAGATTCCTGTGCCGGGCGATGTGACGAAGCGAAAAACGATGCTCGAGC
TGGACCCGGCGGGAGACCGGATGCACCTTTCCTTCAAGAACAGGCCGGAC
TTCGAGCCTCTGGAGGGGAAGTTTAAGGATCTCATCAGCCCCCTTGACTC
CGTCTGGATGCTGGGTGAGCGTGCCTACTTGTAA
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Coding sequence (CDS) from alignment at C-linearis_contig97:399038..401371+

>mRNA_C-linearis_contig97.17103.1 ID=mRNA_C-linearis_contig97.17103.1|Name=mRNA_C-linearis_contig97.17103.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1428bp|location=Sequence derived from alignment at C-linearis_contig97:399038..401371+ (Chordaria linearis ClinC8C monoicous)
GCCGACAAGGTTCCGAGCGATCCCAATGAACTACAGGCCGACAAGGTTCC
GAGCGATCCCAATGAACTACAGAGGTTGGAACGAGAGTACTACGAAAGGG
CCATGGAGCGCAACAAGCGGAAGCGTCAGGAGGACATCGACAGGCTCACG
AAGCTCAGGCACAACCTCAGAGACCTGCCCAAGCAGCGCCAGTGTCACCG
CTACCGGTGGACCCAGACGGAGACCACGTTCGACGTCGAGATTCCTATGC
TCAAGGCCTGCACCGACGAGGACCTGTACCTGGTGGTGGAGAGGGATCAG
ATGCAGGTTGCCATCAAGACGGATGAGTCGTTCGGAGCCATCACGAGGTT
GGAACGAGAGTACTACGAAAGGGCCATGGAGCGCAACAAGCGGAAGCGTC
AGGAGGACATCGACAGGCTCACGAAGCTCAGGCACAACCTCAGAGACCTG
CCCAAGCAGCGCCAGTGTCACCGCTACCGGTGGACCCAGACGGAGACCAC
GTTCGACGTCGAGATTCCTATGCTCAAGGCCTGCACCGACGAGGACCTGT
ACCTGGTGGTGGAGAGGGATCAGATGCAGGTTGCCATCAAGACGGATGAG
TCGTTCGGAGCCATCACGGGTGTTTTCCCGGGTGATGTGGATGCCACAAG
TTGCAGCTTTCGGATCCACAGTCGTTTCAACGAGCCCTACATCCACCTAG
AAATTGTCAAGTTGACCGCACCAGGGTGTTTTCCCGGGTGATGTGGATGC
CACAAGTTGCAGCTTTCGGATCCACAGTCGTTTCAACGAGCCCTACATCC
ACCTAGAAATTGTCAAGTTGACCGCACCAGGGATGTACGAGTTTTGGCAC
GAGCTGCTGCAGGGTGAGAAAGAGAGCCCTACCATCCGTTTCAAGGGGGA
AACGCCACGCTACAGCTGGAAGCAGAATGCGGAAACAATAGAGGGATGTA
CGAGTTTTGGCACGAGCTGCTGCAGGGTGAGAAAGAGAGCCCTACCATCC
GTTTCAAGGGGGAAACGCCACGCTACAGCTGGAAGCAGAATGCGGAAACA
ATAGAGTTGGAGATTCCTGTGCCGGGCGATGTGACGAAGCGAAAAACGAT
GCTCGAGCTGGACCCGGCGGGAGACCGGATGCACCTTTCCTTCAAGAACA
GGCCGGACTTCGAGCCTCTGGAGGGGAAGTTTAAGGATCTCATCAGCCCC
CTTGACTCCGTCTGGATGCTGGGTGAGCGTGCCTACTTGTAATTGGAGAT
TCCTGTGCCGGGCGATGTGACGAAGCGAAAAACGATGCTCGAGCTGGACC
CGGCGGGAGACCGGATGCACCTTTCCTTCAAGAACAGGCCGGACTTCGAG
CCTCTGGAGGGGAAGTTTAAGGATCTCATCAGCCCCCTTGACTCCGTCTG
GATGCTGGGTGAGCGTGCCTACTTGTAA
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