mRNA_C-linearis_contig97.17099.1 (mRNA) Chordaria linearis ClinC8C monoicous
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17099.1 vs. uniprot
Match: D8LKZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ1_ECTSI) HSP 1 Score: 790 bits (2039), Expect = 4.370e-282 Identity = 414/568 (72.89%), Postives = 445/568 (78.35%), Query Frame = 1
Query: 40 MLRRLGLAKAPANGT--TDG--GTDAISVVSRP--DPYVQTRFFKVVYRGRVAVRSNPAEPAPEDGQSFGHGDVLEVKGLAVAVPEGVVVELKQPQGGFVFQRHGSRTLLEEVEALKVEEGDWWYRVLHPAGARFVKIPSLQPKAPRHVSPVPQNSIVHACRRHTPPGSSVSFVELSGNKGWIVESAKERAVLEKSVDGQFMVENITGEYRDDAEAWYEVVAASGVELLGAPDTTRGRMLELFLPGKSFCASERFQPPGQASTFLKVKGREAWVVQRLESDGEEACRKLPPPMDEAVEQWCRVVYPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSHILLQVATPEGVVRDSSD--GDDGNVNDDTNSDDDDQGLDPLEQARRAAKRHCGWVPSTSNGLEVITETLEPWIERGLFAYQVVVDDTLSARTGPHENAPGILQHLPPYSVAAAATFLETGDGLEGFVQLAGTGSWVSSRRGQKNSMIRLPAFPHVDKTQRRFVVSAPDGVKTVVGPSHLAPPTGQLLPFGTEGSSEMVWSVEGWPGDRGAGGRKFVLLEGMG 1719
ML+RLGL KA NG T+G G VVS P + + Q RF K SFG GDV+EV+GLAVAVPEGVVVELKQPQ GFVFQ+HG RTLLEEVEALKVEEGDWWYRV+HPAGARF KIPSL P+ PRH VPQN++VHACRRHTPPGSSV+FVELS NKGWIVES KE+AVLE+S DG++MVENITG YRDD+EAWY+VV SGVELL APD RMLELFLPGK+FC SERFQPP Q STFLKVKGREAWVVQR ESDGEEAC+KLPPPMDEAVEQW RV YPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSH+LLQVATPEGVVRDSS G+ +V ++ D D D LEQARR A+RHCGWVPSTSNG EV VVD+TL A TGPH NAPG Q LPPYSVAAAATFLETGDGLEGFVQLAGTGSWV SRRGQ M+RLPAFP VDKT RRFVVSAP GV+TVVGPS AP TGQLLP G EGSSEMVWSV+GWPGDRG G R+FVLLEGMG
Sbjct: 34 MLQRLGLTKASVNGANGTEGANGEAKREVVSVPPVEEFEQARFLK----------------------SFGFGDVVEVRGLAVAVPEGVVVELKQPQSGFVFQKHGDRTLLEEVEALKVEEGDWWYRVVHPAGARFAKIPSLLPQTPRHTIAVPQNTVVHACRRHTPPGSSVTFVELSDNKGWIVESTKEKAVLEQSSDGKYMVENITGHYRDDSEAWYQVVDESGVELLEAPDAGSTRMLELFLPGKAFCVSERFQPPEQGSTFLKVKGREAWVVQRAESDGEEACKKLPPPMDEAVEQWYRVQYPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSHMLLQVATPEGVVRDSSSEYGETVDVYGSSSDDSDWDNEDELEQARRGARRHCGWVPSTSNGEEV------------------VVDETLLANTGPHVNAPGSPQQLPPYSVAAAATFLETGDGLEGFVQLAGTGSWVLSRRGQDTKMVRLPAFPRVDKTPRRFVVSAPGGVETVVGPSPSAPRTGQLLPLGAEGSSEMVWSVKGWPGDRGVGDRRFVLLEGMG 561
BLAST of mRNA_C-linearis_contig97.17099.1 vs. uniprot
Match: A0A7S2UXS7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS7_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 5.850e-7 Identity = 78/315 (24.76%), Postives = 136/315 (43.17%), Query Frame = 1
Query: 148 FFKVVYRGRVAVRSNPAEPAPEDGQSFGHGDVLEVKGLAVAVPEGVVV----ELKQP--QGGFVFQR----HGSRTLLEEVEAL------KVEEGDWWYRVLHPAGARFVKIPSLQPKAPRHVSPVPQNSIVHACRRHTP-PGSSVSFVELSGNKGWIVESAKERAVLEK----SVDGQFMVENITGEY-------------RDDAEA--WYEVVAASGV----ELLGAPDTTRGRMLELFLPGKSFCASERFQPPGQASTFLKVKGREAWVVQRLESDGEEACRKLPPPMDEAVEQWCRVVYPGGVRLRASPAF 972
F++VV+ VAVR P + G +G+V+E+ + + + P + G+VF+R + + +EEV+AL KV++ D++YRV+H GA+ + + RH +P ++V A RR P S + ++ ++G+I+E+ +L+ SVD + GE ++D E +++VV GV E +TR +L+ S C P +F + WV R++ R++P ++ + RVVY GGV +R P F
Sbjct: 22 FYRVVHPKGVAVRETPDVEGRKTGTCLFYGEVVEISQKVKLLDDDTTYLRMDHFRDPWMRKGWVFERVRALNPETSRMEEVQALEPMKPPKVQQDDFFYRVIHQDGAQLA-VKARMDSELRHER-LPFGTVVEASRRVKPFEASDILYLRPDSHEGFILETPGGEMLLKAPPPASVDPAAEEASQRGEMLPTLERFEPQPAEQEDNEGTFFFQVVCEPGVFVRKEAKLCAQSTR-TLLKAETTFTSTCLRTLKYPGLGEVSFARCDAARGWV--RIQKHKIPIIREVPDAVENGPFNY-RVVYEGGVSVRTEPRF 330 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17099.1 >prot_C-linearis_contig97.17099.1 ID=prot_C-linearis_contig97.17099.1|Name=mRNA_C-linearis_contig97.17099.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=573bp AVHRPNRRTRQRSMLRRLGLAKAPANGTTDGGTDAISVVSRPDPYVQTRFback to top mRNA from alignment at C-linearis_contig97:375216..382612- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17099.1 ID=mRNA_C-linearis_contig97.17099.1|Name=mRNA_C-linearis_contig97.17099.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7397bp|location=Sequence derived from alignment at C-linearis_contig97:375216..382612- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:375216..382612- >mRNA_C-linearis_contig97.17099.1 ID=mRNA_C-linearis_contig97.17099.1|Name=mRNA_C-linearis_contig97.17099.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3438bp|location=Sequence derived from alignment at C-linearis_contig97:375216..382612- (Chordaria linearis ClinC8C monoicous)back to top |