mRNA_C-linearis_contig97.17099.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17099.1 vs. uniprot
Match: D8LKZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ1_ECTSI) HSP 1 Score: 790 bits (2039), Expect = 4.370e-282 Identity = 414/568 (72.89%), Postives = 445/568 (78.35%), Query Frame = 1 Query: 40 MLRRLGLAKAPANGT--TDG--GTDAISVVSRP--DPYVQTRFFKVVYRGRVAVRSNPAEPAPEDGQSFGHGDVLEVKGLAVAVPEGVVVELKQPQGGFVFQRHGSRTLLEEVEALKVEEGDWWYRVLHPAGARFVKIPSLQPKAPRHVSPVPQNSIVHACRRHTPPGSSVSFVELSGNKGWIVESAKERAVLEKSVDGQFMVENITGEYRDDAEAWYEVVAASGVELLGAPDTTRGRMLELFLPGKSFCASERFQPPGQASTFLKVKGREAWVVQRLESDGEEACRKLPPPMDEAVEQWCRVVYPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSHILLQVATPEGVVRDSSD--GDDGNVNDDTNSDDDDQGLDPLEQARRAAKRHCGWVPSTSNGLEVITETLEPWIERGLFAYQVVVDDTLSARTGPHENAPGILQHLPPYSVAAAATFLETGDGLEGFVQLAGTGSWVSSRRGQKNSMIRLPAFPHVDKTQRRFVVSAPDGVKTVVGPSHLAPPTGQLLPFGTEGSSEMVWSVEGWPGDRGAGGRKFVLLEGMG 1719
ML+RLGL KA NG T+G G VVS P + + Q RF K SFG GDV+EV+GLAVAVPEGVVVELKQPQ GFVFQ+HG RTLLEEVEALKVEEGDWWYRV+HPAGARF KIPSL P+ PRH VPQN++VHACRRHTPPGSSV+FVELS NKGWIVES KE+AVLE+S DG++MVENITG YRDD+EAWY+VV SGVELL APD RMLELFLPGK+FC SERFQPP Q STFLKVKGREAWVVQR ESDGEEAC+KLPPPMDEAVEQW RV YPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSH+LLQVATPEGVVRDSS G+ +V ++ D D D LEQARR A+RHCGWVPSTSNG EV VVD+TL A TGPH NAPG Q LPPYSVAAAATFLETGDGLEGFVQLAGTGSWV SRRGQ M+RLPAFP VDKT RRFVVSAP GV+TVVGPS AP TGQLLP G EGSSEMVWSV+GWPGDRG G R+FVLLEGMG
Sbjct: 34 MLQRLGLTKASVNGANGTEGANGEAKREVVSVPPVEEFEQARFLK----------------------SFGFGDVVEVRGLAVAVPEGVVVELKQPQSGFVFQKHGDRTLLEEVEALKVEEGDWWYRVVHPAGARFAKIPSLLPQTPRHTIAVPQNTVVHACRRHTPPGSSVTFVELSDNKGWIVESTKEKAVLEQSSDGKYMVENITGHYRDDSEAWYQVVDESGVELLEAPDAGSTRMLELFLPGKAFCVSERFQPPEQGSTFLKVKGREAWVVQRAESDGEEACKKLPPPMDEAVEQWYRVQYPGGVRLRASPAFEHTDPSLGVLVCGWVFLATRRYRAPGSSHMLLQVATPEGVVRDSSSEYGETVDVYGSSSDDSDWDNEDELEQARRGARRHCGWVPSTSNGEEV------------------VVDETLLANTGPHVNAPGSPQQLPPYSVAAAATFLETGDGLEGFVQLAGTGSWVLSRRGQDTKMVRLPAFPRVDKTPRRFVVSAPGGVETVVGPSPSAPRTGQLLPLGAEGSSEMVWSVKGWPGDRGVGDRRFVLLEGMG 561
BLAST of mRNA_C-linearis_contig97.17099.1 vs. uniprot
Match: A0A7S2UXS7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXS7_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 5.850e-7 Identity = 78/315 (24.76%), Postives = 136/315 (43.17%), Query Frame = 1 Query: 148 FFKVVYRGRVAVRSNPAEPAPEDGQSFGHGDVLEVKGLAVAVPEGVVV----ELKQP--QGGFVFQR----HGSRTLLEEVEAL------KVEEGDWWYRVLHPAGARFVKIPSLQPKAPRHVSPVPQNSIVHACRRHTP-PGSSVSFVELSGNKGWIVESAKERAVLEK----SVDGQFMVENITGEY-------------RDDAEA--WYEVVAASGV----ELLGAPDTTRGRMLELFLPGKSFCASERFQPPGQASTFLKVKGREAWVVQRLESDGEEACRKLPPPMDEAVEQWCRVVYPGGVRLRASPAF 972
F++VV+ VAVR P + G +G+V+E+ + + + P + G+VF+R + + +EEV+AL KV++ D++YRV+H GA+ + + RH +P ++V A RR P S + ++ ++G+I+E+ +L+ SVD + GE ++D E +++VV GV E +TR +L+ S C P +F + WV R++ R++P ++ + RVVY GGV +R P F
Sbjct: 22 FYRVVHPKGVAVRETPDVEGRKTGTCLFYGEVVEISQKVKLLDDDTTYLRMDHFRDPWMRKGWVFERVRALNPETSRMEEVQALEPMKPPKVQQDDFFYRVIHQDGAQLA-VKARMDSELRHER-LPFGTVVEASRRVKPFEASDILYLRPDSHEGFILETPGGEMLLKAPPPASVDPAAEEASQRGEMLPTLERFEPQPAEQEDNEGTFFFQVVCEPGVFVRKEAKLCAQSTR-TLLKAETTFTSTCLRTLKYPGLGEVSFARCDAARGWV--RIQKHKIPIIREVPDAVENGPFNY-RVVYEGGVSVRTEPRF 330 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17099.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17099.1 >prot_C-linearis_contig97.17099.1 ID=prot_C-linearis_contig97.17099.1|Name=mRNA_C-linearis_contig97.17099.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=573bp AVHRPNRRTRQRSMLRRLGLAKAPANGTTDGGTDAISVVSRPDPYVQTRFback to top mRNA from alignment at C-linearis_contig97:375216..382612- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17099.1 ID=mRNA_C-linearis_contig97.17099.1|Name=mRNA_C-linearis_contig97.17099.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=7397bp|location=Sequence derived from alignment at C-linearis_contig97:375216..382612- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:375216..382612- >mRNA_C-linearis_contig97.17099.1 ID=mRNA_C-linearis_contig97.17099.1|Name=mRNA_C-linearis_contig97.17099.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3438bp|location=Sequence derived from alignment at C-linearis_contig97:375216..382612- (Chordaria linearis ClinC8C monoicous)back to top |