Homology
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
D8LKW0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKW0_ECTSI)
HSP 1 Score: 434 bits (1116), Expect = 5.470e-139
Identity = 282/583 (48.37%), Postives = 321/583 (55.06%), Query Frame = 2
Query: 617 DGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSRQGMSTMGKTPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAQAQGSPTSGSGGLTGATPPGQPISSTQGGIPLLSSGAGPTGLCDHSSSSNNSXXXXXXXXXXXXXXXXGQTQSLPIPLSLGSGIADSRRD-RTAEILLPMSFGPRDAGSASASXXXASPGRAAHSHHNPSPRDFRGSTGGXXXXXXXXXXXXXAASVRRVTVRSEHLLSRNVQAGRVVAFAGGAAGALLVSQEFGERWP-----QHGITKFSLADLRHHKNIHLHREQIRDIKFSVEGGNVSYILSTGFDKTLKVCDLRTDTVIVSYDLEGNGWSCQWSATNPTQMFCGVVDEARVSAVQLFDLRSTAGAVRKLRATARQRQPIHSICHTADDLLLCAAMGGVWAWGGGTK 2347
DGERCSICLD WTSKGKHRICTLLCGHLFG+SCIERWLKERRSCPQCG KVG KG+NR+IPLF+ NLVA+DTGELETART LEEEKRLRKQCEAERVR+SIENASLKD+LSR G + A++QGS ++ G P + +S GAGP G+ + SS+ + P P SG A + +T P+ G D G+ S G AA GS G AA V VR E LLSR+V +GRV AFAGGAAGAL+VSQE G +HG+TKFSLADLRH+K+IHLHREQ+RD+KFS +GG+V YILST FDKTLKVCDLRTD+V+V Y+LEG+GWSCQWS+T PTQMFCGVVD R SAVQLFDLRSTAGAVRKLRA A QRQPIHSICHTADD+L CA MGGVWAWGGGTK
Sbjct: 41 DGERCSICLDPWTSKGKHRICTLLCGHLFGQSCIERWLKERRSCPQCGTKVGAKGTNRIIPLFLHNLVAQDTGELETARTLLEEEKRLRKQCEAERVRVSIENASLKDRLSRLDQGGAGVVSSIV----------------------------------------------------------------------------------------------------------ARSQGSVST-----PGCPKPKRTLSQL-----ATPGGAGP-GVSSVAYSSS--------------VDIGSNSFMTPCPKISHSGPAVAYPQFKTPPPRRPI--GNLDVGAGGGSGGW---GLAATES---------GSEG--------------AAVGSTVAVRFEQLLSRDVLSGRVAAFAGGAAGALVVSQELGIAGGSRGSLRHGVTKFSLADLRHNKSIHLHREQVRDVKFSADGGSVGYILSTSFDKTLKVCDLRTDSVVVQYELEGSGWSCQWSSTAPTQMFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK 464
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
A0A6H5JB60_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB60_9PHAE)
HSP 1 Score: 435 bits (1118), Expect = 1.100e-137
Identity = 278/585 (47.52%), Postives = 322/585 (55.04%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSRQGMSTMGKTPNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAQAQGSPTSGSGGLTGATPPGQPISSTQGGIPLLSSGAGPTGLCDHSSSSNNSXXXXXXXXXXXXXXXXGQTQSLPIP-LSLGSGIADSRRDRTAEILLPMSFGPRDAGSASASXXXASPGRAAHSHHNPSPRDFRGSTGGXXXXXXXXXXXXXAASVRRVTVRSEHLLSRNVQAGRVVAFAGGAAGALLVSQEFGERWP-----QHGITKFSLADLRHHKNIHLHREQIRDIKFSVEGGNVSYILSTGFDKTLKVCDLRTDTVIVSYDLEGNGWSCQWSATNPTQMFCGVVDEARVSAVQLFDLRSTAGAVRKLRATARQRQPIHSICHTADDLLLCAAMGGVWAWGGGTK 2347
++DGERCSICLD WTSKGKHRICTLLCGHLFG+SCIERWLKERRSCPQCGAKVG KG+NR+IPLF+QNLVA+DTGELETART LEEEKRLRKQCEAERVR+SIENASLKD+LSR G + A++Q S ++ G P + +S + G G+ + SS+ + P P +S A R +T P+ G D G+ S GR + + S GST V VR E LLSR+V +GRV AFAGGAAGAL+VSQE G +HG+TKFSLADLRH+K+IHLHREQ+RD+KFS +GG+V YILST FDKTLKVCDLRTD+V+V Y+LEG+GWSCQWS+T PTQMFCGVVD R SAVQLFDLRSTAGAVRKLRA A QRQPIHSICHTADD+L CA MGGVWAWGGGTK
Sbjct: 114 EADGERCSICLDPWTSKGKHRICTLLCGHLFGQSCIERWLKERRSCPQCGAKVGAKGTNRIIPLFLQNLVAQDTGELETARTLLEEEKRLRKQCEAERVRVSIENASLKDRLSRLNQGGAGVVSSSV----------------------------------------------------------------------------------------------------------ARSQESVST-----PGCPKPIRTLSQ------FATPGRAGPGVSSVAYSSS--------------VDIGSSSFMTPCPKISHPGPAAAYSRFKTPPPRRPI--GNLDVGAGGGSG-----GRGLAATESGSEGAAAGST---------------------VAVRFEQLLSRDVLSGRVAAFAGGAAGALVVSQELGIAGGSRGSLRHGVTKFSLADLRHNKSIHLHREQLRDVKFSADGGSVGYILSTSFDKTLKVCDLRTDSVVVQYELEGSGWSCQWSSTTPTQMFCGVVDGTRTSAVQLFDLRSTAGAVRKLRAAASQRQPIHSICHTADDVLCCATMGGVWAWGGGTK 539
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
A0A851UBM4_9PASS (RFWD3 ligase (Fragment) n=2 Tax=Passeriformes TaxID=9126 RepID=A0A851UBM4_9PASS)
HSP 1 Score: 99.0 bits (245), Expect = 1.270e-17
Identity = 51/115 (44.35%), Postives = 75/115 (65.22%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G+HR+C L CGHLFG +CIERWLK + CPQC K K S+ V+ L+ + L A DT E E R+ LE+E+ LR+Q E E + ++ L D+ S+
Sbjct: 253 EEEGDTCAICFEQWTNAGEHRLCALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQERMRSSLEKEQMLRRQAELESAQSRLQLQVLTDECSK 364
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
A0A267GDQ9_9PLAT (RING-type domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267GDQ9_9PLAT)
HSP 1 Score: 96.3 bits (238), Expect = 1.680e-17
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 2
Query: 623 ERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQ---LSRQ 955
E C+IC + WTS G+HR+C L CGHLFGKSC+ERWL+ R+ CPQC + V+PL+V NL A D E E + +++ KR + E E + + L+D+ LSRQ
Sbjct: 245 EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKRAKLTAEQEAGDMRLRLDMLRDENRRLSRQ 355
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
UPI00193A6C01 (E3 ubiquitin-protein ligase RFWD3-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193A6C01)
HSP 1 Score: 97.8 bits (242), Expect = 2.310e-17
Identity = 48/104 (46.15%), Postives = 66/104 (63.46%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIE 922
+ DG+ C IC + W++ GKHR+ +L CGHLFG+SCIERW+K + CPQC K K RV L+ + L A DT EL A T E EK+LR+ E E ++ ++
Sbjct: 159 EEDGDCCPICFEHWSNSGKHRLSSLKCGHLFGQSCIERWMKGAKKCPQCNTKA-RKADIRV--LYAKKLTAVDTTELTEATTAFEHEKKLRRNKEMELAKVQMQ 259
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
A0A7K5DY35_POLCE (RFWD3 ligase (Fragment) n=1 Tax=Polioptila caerulea TaxID=66707 RepID=A0A7K5DY35_POLCE)
HSP 1 Score: 97.4 bits (241), Expect = 3.890e-17
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G HR+C L CGHLFG +CIERWLK + CPQC K K S+ VI L+ + L A DT E E ++ LE+E+ LR+Q E E + ++ L D+ S+
Sbjct: 259 EEEGDTCAICFEQWTNAGDHRLCALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVI-LYARTLKALDTSEQERMKSSLEKEQMLRRQAELESAQSRLQLQVLTDECSK 370
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
A0A1I8IIU3_9PLAT (RING-type domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8IIU3_9PLAT)
HSP 1 Score: 96.3 bits (238), Expect = 4.970e-17
Identity = 50/114 (43.86%), Postives = 69/114 (60.53%), Query Frame = 2
Query: 623 ERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLKERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQ---LSRQ 955
E C+IC + WTS G+HR+C L CGHLFGKSC+ERWL+ R+ CPQC + V+PL+V NL A D E E + +++ KR + E E + + L+D+ LSRQ
Sbjct: 245 EGCTICFEPWTSSGEHRVCALRCGHLFGKSCVERWLETRQQCPQCNRNCRR---HEVLPLYVTNLRAVDNSENEALKLEIDKIKRAKLTAEQEAGDMRLRLDMLRDENRRLSRQ 355
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
A0A851CAX2_CALVR (RFWD3 ligase (Fragment) n=1 Tax=Calyptomena viridis TaxID=135972 RepID=A0A851CAX2_CALVR)
HSP 1 Score: 95.1 bits (235), Expect = 6.780e-17
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G HR+ L CGHLFG +CIERWLK + CPQC K K S+ V+ L+ + L A DT E E R+ LE+E++LR+Q E E + ++ L D+ S+
Sbjct: 256 EEEGDTCTICFEQWTNAGDHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQEHMRSSLEKEQKLRRQAELESAQSRLQLQVLTDECSK 367
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
A0A7R5KIL2_9PASS (E3 ubiquitin-protein ligase RFWD3 isoform X1 n=4 Tax=Pipridae TaxID=114313 RepID=A0A7R5KIL2_9PASS)
HSP 1 Score: 96.7 bits (239), Expect = 7.030e-17
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G+HR+ L CGHLFG +CIERWLK + CPQC K K S+ V+ L+ + L A DT E E R+ LE+EK LR+Q E E + ++ L D+ S+
Sbjct: 286 EEEGDTCAICFEQWTNAGEHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVV-LYARTLKALDTSEQERMRSSLEKEKMLRRQAELESAQSRLQLQVLTDECSK 397
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Match:
A0A8D2NUR9_ZOSLA (Ring finger and WD repeat domain 3 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A8D2NUR9_ZOSLA)
HSP 1 Score: 95.9 bits (237), Expect = 7.200e-17
Identity = 51/115 (44.35%), Postives = 74/115 (64.35%), Query Frame = 2
Query: 611 KSDGERCSICLDEWTSKGKHRICTLLCGHLFGKSCIERWLK-ERRSCPQCGAKVGTKGSNRVIPLFVQNLVAKDTGELETARTCLEEEKRLRKQCEAERVRLSIENASLKDQLSR 952
+ +G+ C+IC ++WT+ G HR+ L CGHLFG +CIERWLK + CPQC K K S+ VI L+ + L A DT E E R+ LE+E++LR+Q E E + ++ L D+ S+
Sbjct: 63 EEEGDTCAICFEQWTNAGDHRLSALRCGHLFGYTCIERWLKGQAGKCPQCNKKA--KRSDIVI-LYARTLKALDTSEQERMRSSLEKEQKLRRQAELESAQSRLQLQVLTDECSK 174
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17098.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 5.47e-139 / Id = 48.37 Expect = 1.10e-137 / Id = 47.52 Expect = 1.27e-17 / Id = 44.35 Expect = 1.68e-17 / Id = 43.86 Expect = 2.31e-17 / Id = 46.15 Expect = 3.89e-17 / Id = 44.35 Expect = 4.97e-17 / Id = 43.86 Expect = 6.78e-17 / Id = 43.48 Expect = 7.03e-17 / Id = 44.35 Expect = 7.20e-17 / Id = 44.35 Sequence D8LKW0_ECTSI A0A6H5JB60_9PHAE A0A851UBM4_9PASS A0A267GDQ9_9PLAT UPI00193A6C01 A0A7K5DY35_POLCE A0A1I8IIU3_9PLAT A0A851CAX2_CALVR A0A7R5KIL2_9PASS A0A8D2NUR9_ZOSLA Pages
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 439.5 Seed ortholog evalue 2.9e-120 Seed eggNOG ortholog 2880.D8LKW0 KEGG ko ko:K15691 Hectar predicted targeting category other localisation GOs GO:0000075,GO:0000077,GO:0000278,GO:0000724,GO:0000725,GO:0002039,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006464,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009314,GO:0009628,GO:0009987,GO:0010212,GO:0010564,GO:0010948,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0022402,GO:0031297,GO:0031570,GO:0031571,GO:0031974,GO:0031981,GO:0032446,GO:0033554,GO:0034641,GO:0034645,GO:0036211,GO:0036297,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045005,GO:0045786,GO:0045930,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0080134,GO:0080135,GO:0090304,GO:0090734,GO:0097371,GO:0140096,GO:1901360,GO:1901564,GO:1901576,GO:1901976,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:2000001,GO:2000045,GO:2000134,GO:2001020 EggNOG free text desc. MDM2/MDM4 family protein binding EggNOG OGs KOG1645@1,KOG1645@2759 Ec32 ortholog description WD40/YVTN repeat-like-containing domain Ec32 ortholog Ec-11_005750.1 EC 2.3.2.27 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko01000,ko04121 Exons 8 Model size 2351 Cds size 2070 Stop 0 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930834.9400432-UTR-C-linearis_contig97:366542..366822 1622930834.9400432-UTR-C-linearis_contig97:366542..366822 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 366543..366822 + 1690881274.049366-UTR-C-linearis_contig97:366542..366822 1690881274.049366-UTR-C-linearis_contig97:366542..366822 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 366543..366822 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930834.9578178-CDS-C-linearis_contig97:366822..367158 1622930834.9578178-CDS-C-linearis_contig97:366822..367158 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 366823..367158 + 1690881274.065516-CDS-C-linearis_contig97:366822..367158 1690881274.065516-CDS-C-linearis_contig97:366822..367158 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 366823..367158 + 1622930834.9800966-CDS-C-linearis_contig97:367438..367494 1622930834.9800966-CDS-C-linearis_contig97:367438..367494 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 367439..367494 + 1690881274.0794296-CDS-C-linearis_contig97:367438..367494 1690881274.0794296-CDS-C-linearis_contig97:367438..367494 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 367439..367494 + 1622930835.0006514-CDS-C-linearis_contig97:367836..367897 1622930835.0006514-CDS-C-linearis_contig97:367836..367897 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 367837..367897 + 1690881274.0901144-CDS-C-linearis_contig97:367836..367897 1690881274.0901144-CDS-C-linearis_contig97:367836..367897 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 367837..367897 + 1622930835.0241387-CDS-C-linearis_contig97:368317..368473 1622930835.0241387-CDS-C-linearis_contig97:368317..368473 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 368318..368473 + 1690881274.0998735-CDS-C-linearis_contig97:368317..368473 1690881274.0998735-CDS-C-linearis_contig97:368317..368473 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 368318..368473 + 1622930835.0459113-CDS-C-linearis_contig97:368846..369881 1622930835.0459113-CDS-C-linearis_contig97:368846..369881 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 368847..369881 + 1690881274.1101754-CDS-C-linearis_contig97:368846..369881 1690881274.1101754-CDS-C-linearis_contig97:368846..369881 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 368847..369881 + 1622930835.0685241-CDS-C-linearis_contig97:370638..370770 1622930835.0685241-CDS-C-linearis_contig97:370638..370770 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 370639..370770 + 1690881274.1205645-CDS-C-linearis_contig97:370638..370770 1690881274.1205645-CDS-C-linearis_contig97:370638..370770 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 370639..370770 + 1622930835.0877233-CDS-C-linearis_contig97:371201..371294 1622930835.0877233-CDS-C-linearis_contig97:371201..371294 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 371202..371294 + 1690881274.1301334-CDS-C-linearis_contig97:371201..371294 1690881274.1301334-CDS-C-linearis_contig97:371201..371294 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 371202..371294 + 1622930835.1096601-CDS-C-linearis_contig97:371608..371809 1622930835.1096601-CDS-C-linearis_contig97:371608..371809 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 371609..371809 + 1690881274.1390064-CDS-C-linearis_contig97:371608..371809 1690881274.1390064-CDS-C-linearis_contig97:371608..371809 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 371609..371809 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17098.1
>prot_C-linearis_contig97.17098.1 ID=prot_C-linearis_contig97.17098.1|Name=mRNA_C-linearis_contig97.17098.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=690bp
MVSSPSSVIDLTCRGREGEAAATDRAPAADVHTDMAAASGAITGTPRQAP back to top mRNA from alignment at C-linearis_contig97:366543..371809+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17098.1 ID=mRNA_C-linearis_contig97.17098.1|Name=mRNA_C-linearis_contig97.17098.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5267bp|location=Sequence derived from alignment at C-linearis_contig97:366543..371809+ (Chordaria linearis ClinC8C monoicous)CAGCGCCAAGGAGAGAGACGAGAAGCGGGGAGGGTGAGAGCCCGGCTGCT
GCGTGAGAGACCAGTCGCCTGGACTTCTATAGTTGTGGGCGAGTTTTTCG
AGCACTTCTCAGTTGCTCTACGGCAGCGCCCGTTGTCCTTTTCTTTCCTC
CTGCGCTGGAGCGGAGATACGTCAGGCGGGCAGTAGGGAGCAGGCGGAGG
CGGCGTCGGTTGCACAGCTTGGGTGCGGGGGAATTACCAGGAGAAATCGT
GGAAACCGTGGCGTATGAGCCTTTCCCGCG ATGGTATCATCACCATCAAG
TGTCATTGATCTCACCTGTCGAGGTCGAGAGGGGGAGGCTGCAGCAACAG
ACAGAGCACCGGCTGCTGATGTGCACACGGACATGGCTGCTGCCTCAGGG
GCCATCACAGGAACACCACGACAAGCACCACGAGAGGAAGTTTCAGCAGC
AGAAGAGGAATCCTCAATGGTTAGAGGGGTTGGACCTTTGCGTGATTCAA
CCAACACGAGCGCAGCAGCGTTGGCAAGTGACGGAGATGATGCGGATGCT
GCTGGTTCTGCGCCCGTGAGGAGGAAAAAGCGCAAGGCACAGGCACCACC
ACCACCCCCCAAGTCG GTGAGAGCTCGCGGTTCTTAGTTCATTCATGTGC
TTTACACCAGGTCAGCTAGTAGGGCCGGGTGGAACCAAGAGTATTTTCAA
AGGGTGCAGGGCATCATTCTGATGCATGAGTGCACCAAGCGTCGGGCGAT
GCGGCTGGGTAGTTGGATGTTTGCCTGCGCTGGGTACCTGGGAGCAGTGG
GAGCAATGCTCCTATGCCCAGATCAACGTATTCCCCCACGAAGTTGACCG
GGAGCCTGTTATCTTGCGGCCTTTCTCTGCGCTTGCCCTCCAACAGGATG
GCGAGCGGTGCAGCATCTGCCTAGATGAGTGGACGTCGAAAGGCAAACAC
AG GTGCATGCCAGACCTACTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCT
ACATCCGCTGCCTCTTGACTGGGGATGTGCAGTGTGCAGTCAGCCCCTCC
TTTAGTGGGGACGTAAAACATTCCCCCAGTGATGTGAAGGTTTAAACCCT
GCTGAAAACTTGACAACACTGCTATCTGTGGCATCCTCATCCTCCTCTTG
CGTGTATGCCACGAGTTTTGTGATAAACGCCTGCGGAGCGTGTGTTTAGT
ACTGGGTACAACTGCTGTGGGGGAGAGTCTTGAGCGCCTTTCCAAGAACA
ACCTCCTGCTCCCCTCGCTCTCTTTCTGTTTTATTTTCGTTCAGGATTTG
CACCCTCCTCTGCGGACACTTGTTCGGGAAGTCTTGCATCGAGAGATGGC
TGAAA GTGAGTTGAAAAAGTCGAATTGGTTGTGCCAGCCGGCCCTTGGCG
GCTTGGATGCCACCCTAGGCCATGTGGCATTTTCCTTCAACTGCATGGGT
CTCTCTCTTTCGACAGATTTCGCGCCTCAATCGGCAAAGCGTCAACACCG
GGCGGCCGCTCCGATCGAGTGGGGTTCGGAACTCTTGAGTCCGTGTTTGC
ATTAAGTATCCATCCTTGGATAAGGTTTATGGTTTCGGCGTTGGTCGTTG
CCGCGCGCGAAGCAGCAAACGCCGAACCATCAAGACATTAAGAGACACCC
GGGAGTTGACCCTCAAGCACGCCTTGGGGCCCTTTTTTTTATCCACTGCA
CTAAAGGATTGTGTCCATGAATATGCGGCTCTGCTTTTATGGGCTTTTTC
CACCTTGAAATGGATGTGTTTACAGGAGAGGCGCAGCTGCCCCCAGTGCG
GCGCGAAGGTGGGAACGAAGGGCAGCAACCGGGTCATCCCTCTCTTCGTG
CAGAACCTGGTTGCGAAGGACACGGGCGAGCTGGAAACCGCTCGGACGTG
CCTGGAAGAAGAGAAGCGCCTCCGGAAACAG GTGTGGGGTGACATAGATC
TCTCTGACTCATCTATCTGTCCTTGTCTGCCTGTTTGTCAGGTGGGGCCG
CTTTTTTGCGCGTGATCGAACGCAGGAAGACAACAGGAAATCTTGTCTTG
GAGTATATTTACTTTTCTGGGGTCATACATCAACCCAGTTTTGTGTGCAG
GCTTCACAGCAGTTGTTGAGATTCCGTTGCCGAATGTTTATTCAAAACGT
GTTCGTTGTTGAGCCTAAATATGTAACGCATTGTTGGTGGCTCAGCTTTT
TCCCTCGCTCTTGAATCGGAGGGGGCTACCCCTGCCTGCTATATCACCAG
CCGCATGCCTGCTCGTGTTTGTATTGGTGTCGCCCCCCGTGATGCCCGGA
CCAGTGCGAAGCGGAGAGAGTGCGGTTGTCGATCGAAAACGCGAGCTTGA
AGGACCAACTCTCGCGCCAGGGCATGAGCACCATGGGGAAGACCCCGAAC
CCCAACCCGGCCGGTGGTGGTGGCGGTGGCCACGGCGGCGGCTATCGGTT
CAAACCCGCTCGGGTGGCGTATGCTTCAACGCCAAGCACTTGCACTACTG
CGATGCTCGGTGCTGGTCCTGGGGTAGGTTCTCCTTCTGTGGTCGCGGCC
TACCCTGCTTTCGCGCAAACCCAAAGGCAAAGGCAGGGGCAAGGAGCAGG
GCCGCCGTTGCCGGTGTCATCGCCGTCACCGGGACATTTCACGGCGCCAG
GAGGAACAGGAACGATGTCCTCGCCTTCGCCTTCGCCTTCATGGCGCACA
AGGTTTAGACGGAGACAAGATCCGGCACAAGCACAAGGTTCACCGACTTC
AGGGTCGGGAGGTTTGACGGGCGCTACCCCGCCCGGACAGCCGATCTCAT
CGACGCAGGGTGGCATCCCTTTGTTGTCATCAGGAGCAGGGCCCACCGGA
CTTTGCGACCACAGCAGCAGCAGCAACAACAGCAATAGCACCGAAGCACC
GAGACAAACGTCATCACCAAGGCAGACGCAAGGGCAAACTCAAAGCCTAC
CGATTCCTCTGTCCCTAGGGTCCGGAATCGCAGACAGCAGGAGGGACAGG
ACCGCCGAGATCTTGTTGCCGATGTCGTTTGGACCAAGGGACGCGGGAAG
CGCTAGTGCTAGTGCTCGCGCTGCTTCTCCGGGCCGGGCGGCACACTCGC
ACCACAATCCGTCGCCGAGAGATTTCCGTGGCAGCACCGGCGGCGGCTGC
GGTAGTGGAGGAGGGAGTACGGCGAAAGCGGCGGCGGCATCAGTCAGGAG
GGTTACCGTGCGAAGCGAGCACCTGCTGTCGAGGAACGTGCAGGCGGGGA
GAGTGGTGGCGTTTGCCGGGGGAGCGGCGGGGGCGTTGCTAGTCTCGCAG
GAGTTTGGGGAGCGGTGGCCGCAGCACGGAATCACGAAG GTGGGGTGGGG
TGGGCATGCCTCTCTAGTCTCTCTTGTCTCTCTTGTGACCGTTACGATAG
CGGGCTAGGTTCTGCGTACGCACGGAAATAGTTGTTTCTGGCTCGGTGTT
TTGCTGTACCCAGGCACAGAAAATGTTCCAACGTACAGGTCCTGACAAAC
GATGGATCGAAATGATGGCAACCACGACTTGTTTGTTTTTTTTCGTTTGT
TTGTACTTGTTTTGTGCTATTGTTTCTTCTTCTCGCTCTCCCGTCCGTTA
AGATTGTTGCTTTTCATGCACCACTCACTCACGAGAGTGCCATGCTCACA
CAGACACCAAGCTTCTATATTCCAACGGCGATGCTGTTGTCGCGCAGTTG
GCCCCTCCTTTTCGCCGTTTACCCCCAAACGACCTCGACAACTAGGCGCC
TTGACCAATCAACGCACGGCGTGCTGCCGGTCAATGTATTTCAATCGTAA
CACATCCGCTGTTGGGTTCGACGTTCATGCATCTCTTCAAAGCGTGAGAC
GCGCTCCGACTTCTCGGCAGGATCGTACTCTCACGTTTCCGCAGGATCTA
GCGCCGTTTTTGGCCCAAATTTAAGCGTTGGACGCGCTGGTCCAGCTGTC
GTGAGACAAATTCCTCGGTGACGCCACAGCGTTTATATTTAACACCAACA
TCGCATGTGCAAATGATTAATCGAAAATATGAATATTTTCCGCTCCCGCC
ATCCTATCTTGCAACGACCTCCCTCTTGCCACGGCATGTGCACCAGTTTA
GCCTCGCGGATCTCCGGCACCACAAGAATATTCACCTGCACCGAGAGCAG
ATCAGAGATATCAAGTTCTCCGTTGAGGGTGGCAACGTGAGCTACATCCT
TAGCACGGGCTTCGACAAGACCTTGAAG GTGAGAGAAAGGATGAAAATAA
TGGCTTTGGGAGAGTGGTGAGACGCTTCTTCCCCTTAGCACACACATTCG
CCTACTCGTCTCCCAAGTTTTTTTCAAACCTCGCACGTTTTCGAGTAAAA
TCAGGCACCACTCTTTACCGCTATCATTTTCCATCCCAAAGTTTCGGGGG
AGGGGGAACAACGACGCATCTGACTGACGTCACCTCGGCGGGACTGACGT
CACCTCGGCGGGCCCAAATGTCGGTCCGTCCCATGCATGCGGAATTTCCT
TGGAACATAAACCATGAAAGTATCGAAAATCACTTATAGTATGTGACAAA
AGTTGTGTGTGCGCCTGTGTTGTAACGGTAGCAATTTACGATGGTGCCTG
TTGCTGATACCGATTGCTTGCCGCTGACCCTACCCTACCCTACCCTACCC
TACTGCCAGGTGTGTGATCTCCGAACGGACACCGTGATTGTGTCATACGA
CCTGGAGGGGAATGGATGGTCTTGCCAATGGAGCGCCACGAACCCCACCC
AG GTACTTGTAGAATACTGTTTATCTTGCCGTCGAAACGGGGTCTCACTT
GCTAGTTGGACAGTTTTGTGACTGTCGCATTGTAGTCACGTCGGTACACA
CGGTGCACACTCTCGTGTTGCCGGTGTTGCCGTTGTCGGTGTTATGTCAA
ACATGGAAATGTCCATTCTCCGACTCGGACCTTTTTAGAGGAATCGCAGA
CATTGTTGCCTTTCGTCTCTTGTTCCGAACGCCAGCCGGTACACAAGCTC
GTTCATCTACGTTCTGATTTGATCGTGGGATGTTTTTTTTCAATTTTTTG
TGTCTGATTGCTTCAGATGTTCTGTGGCGTGGTGGATGAGGCTAGGGTAT
CAGCCGTTCAGCTGTTCGACCTTCGCTCCACCGCCGGGGCCGTTCGCAAG
CTGCGCGCCACGGCGAGGCAAAGGCAGCCCATCCACAGCATCTGCCACAC
CGCAGATGATCTACTTCTATGCGCTGCTATGGGAGGCGTTTGGGCTTGGG
GGGGCGGTACGAAGGGT back to top Coding sequence (CDS) from alignment at C-linearis_contig97:366543..371809+
>mRNA_C-linearis_contig97.17098.1 ID=mRNA_C-linearis_contig97.17098.1|Name=mRNA_C-linearis_contig97.17098.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=4140bp|location=Sequence derived from alignment at C-linearis_contig97:366543..371809+ (Chordaria linearis ClinC8C monoicous) back to top