Homology
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)
HSP 1 Score: 76.6 bits (187), Expect = 3.170e-13
Identity = 48/96 (50.00%), Postives = 59/96 (61.46%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD-NALD-GRGRSPXXXXXXXXXXFTAELGLAAGVDILIRDP 282
AA GNL LVN+LLEAGADGSA W+GC+GRTL+ AAA+GG+ V++ LL AGAQPD N + RS A + AG D+ DP
Sbjct: 41 AAARGNLNLVNSLLEAGADGSAGWKGCRGRTLIDAAALGGSEPVVSALLRAGAQPDVNVVSVSSKRSSLYTATVCGHKDAARRLITAGADVNFEDP 136
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)
HSP 1 Score: 73.9 bits (180), Expect = 2.840e-12
Identity = 49/98 (50.00%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD-NALD-GRGRSPXXXXXXXXXXFTAELGLAAGVDILIRDPVY 288
AA GNL LV++LL AGADGSA WRGC+GRTL+ AAA+GG+ V++TLL AGAQ D N + RS A +AAG D+ DPV+
Sbjct: 41 AAARGNLNLVSSLLGAGADGSAGWRGCRGRTLIDAAALGGSEPVVSTLLRAGAQWDVNVVSVSSKRSALYTATMCGHEDAARRLVAAGADVDFEDPVH 138
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
A0A6H5KNQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNQ1_9PHAE)
HSP 1 Score: 73.2 bits (178), Expect = 2.980e-12
Identity = 46/107 (42.99%), Postives = 58/107 (54.21%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLL--GAGAQPDNALDGRGRSPXXXXXXXXXXFTAELGLAAGVDILIRDPVYDLSAVEMAI 315
AA GN LV LL+AGAD A WRGC+GRTLL AAA+GGN +V++ L+ GAGA + RS A+ + G D+ RDPV S + AI
Sbjct: 41 AASRGNPNLVERLLQAGADAGAGWRGCRGRTLLDAAALGGNADVMSALIRGGAGADVNKVTVSSRRSALHTATCCGHEAAAKRLVLTGADVNFRDPVAKCSVLSQAI 147
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
D8LRS0_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRS0_ECTSI)
HSP 1 Score: 72.8 bits (177), Expect = 6.980e-12
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD 168
AA GNL LVN+LLEAGADGSA WRGC RTL+ AAA+GG+ V++ LL AGAQPD
Sbjct: 41 AAARGNLNLVNSLLEAGADGSAGWRGCLDRTLIDAAALGGSEPVVSALLRAGAQPD 96
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)
HSP 1 Score: 70.1 bits (170), Expect = 4.090e-11
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD---NALDGRGRSPXXXXXXXXXXFTAELGLAAGVDILIRDPVYD 291
AA GN LV+ LL AGA+G A WRGC G+TLLHAAA GGNV+V+T L AGA D ALD G +P A+ + AG ++ + D D
Sbjct: 84 AAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAKALD-TGHTPLDLAVIGGKEAAAKALIMAGANVNMLDATND 182
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
D7FXA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXA8_ECTSI)
HSP 1 Score: 67.8 bits (164), Expect = 3.970e-10
Identity = 43/91 (47.25%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD-NAL-DGRGRSPXXXXXXXXXXFTAELGLAAGVDI 267
AA GNL LV+ LL+AG DG A WRGC+GR+LL AAA+GGN V++ LL AG PD N + GRS A + AG D+
Sbjct: 39 AAASGNLNLVDRLLKAGVDGKAGWRGCRGRSLLDAAALGGNAGVMSALLQAGCGPDVNVVASSTGRSALYQSVLGKHEAAARKLILAGADV 129
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
A0A6H5JY41_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY41_9PHAE)
HSP 1 Score: 67.8 bits (164), Expect = 3.990e-10
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD 168
AA GN+GLV LLEAGADG A WRGC+ RT+L AAA+GGN +V+T LL + PD
Sbjct: 41 AAARGNIGLVERLLEAGADGGAGWRGCRSRTMLDAAALGGNADVVTKLLRSECVPD 96
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)
HSP 1 Score: 67.8 bits (164), Expect = 4.070e-10
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD 168
AA GNLGLV LL AGA+G A WRGC+GRT+L AAA+GGN +V+ TLL +G D
Sbjct: 41 AAARGNLGLVERLLNAGANGGAGWRGCRGRTMLDAAALGGNPDVVATLLASGCASD 96
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
A0A6H5JW91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW91_9PHAE)
HSP 1 Score: 65.5 bits (158), Expect = 5.660e-10
Identity = 35/56 (62.50%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD 168
AA +GN L LLEAGA GSA WRGC+ R+L+ AAAVGGNV+V++ L AGA+PD
Sbjct: 84 AAALGNRDLFYKLLEAGAYGSAGWRGCRDRSLIDAAAVGGNVDVVSGFLEAGAEPD 139
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Match:
D7FQP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQP1_ECTSI)
HSP 1 Score: 67.0 bits (162), Expect = 6.720e-10
Identity = 44/96 (45.83%), Postives = 52/96 (54.17%), Query Frame = 1
Query: 1 AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLGAGAQPD---NALDGRGRSPXXXXXXXXXXFTAELGLAAGVDILIRD 279
AA N LV LL+AGADGSA WRGC +TLLHAAA GGN EV+T L+ AGA D L G +P A + + AG D+ D
Sbjct: 46 AAGTANQDLVEKLLKAGADGSAGWRGCDDKTLLHAAAEGGNEEVVTALVRAGAGEDMEAKVLGIVGGTPLHVAVATGKDAAARVLMLAGADVNAAD 141
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17097.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.17e-13 / Id = 50.00 Expect = 2.84e-12 / Id = 50.00 Expect = 2.98e-12 / Id = 42.99 Expect = 6.98e-12 / Id = 69.64 Expect = 4.09e-11 / Id = 46.00 Expect = 3.97e-10 / Id = 47.25 Expect = 3.99e-10 / Id = 62.50 Expect = 4.07e-10 / Id = 62.50 Expect = 5.66e-10 / Id = 62.50 Expect = 6.72e-10 / Id = 45.83 Sequence D8LRZ8_ECTSI D8LS36_ECTSI A0A6H5KNQ1_9PHAE D8LRS0_ECTSI D8LHQ7_ECTSI D7FXA8_ECTSI A0A6H5JY41_9PHAE A0A6H5K1F4_9PHAE A0A6H5JW91_9PHAE D7FQP1_ECTSI
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 78.2
Seed ortholog evalue 4.2e-12
Seed eggNOG ortholog 2880.D8LRZ8
KEGG ko ko:K21440
Hectar predicted targeting category other localisation
GOs GO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc. response to abiotic stimulus
EggNOG OGs COG0666@1,KOG4177@2759
COG Functional cat. G
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko04131
Exons 2
Model size 513
Cds size 513
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930834.873236-CDS-C-linearis_contig97:365024..365369 1622930834.873236-CDS-C-linearis_contig97:365024..365369 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 365025..365369 -
1690881274.0242682-CDS-C-linearis_contig97:365024..365369 1690881274.0242682-CDS-C-linearis_contig97:365024..365369 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 365025..365369 -
1622930834.892337-CDS-C-linearis_contig97:365663..365831 1622930834.892337-CDS-C-linearis_contig97:365663..365831 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 365664..365831 -
1690881274.0381093-CDS-C-linearis_contig97:365663..365831 1690881274.0381093-CDS-C-linearis_contig97:365663..365831 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 365664..365831 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17097.1
>prot_C-linearis_contig97.17097.1 ID=prot_C-linearis_contig97.17097.1|Name=mRNA_C-linearis_contig97.17097.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=171bp
AADIGNLGLVNTLLEAGADGSARWRGCQGRTLLHAAAVGGNVEVLTTLLG AGAQPDNALDGRGRSPLAAAASGGDVFTAELGLAAGVDILIRDPVYDLSA VEMAIIRGETSAFKALLRHGVDVNYRLKSTGHTALHVAVKFHRVGAIDAL VEAGADIELKEKDGMTPLNEA back to top mRNA from alignment at C-linearis_contig97:365025..365831-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17097.1 ID=mRNA_C-linearis_contig97.17097.1|Name=mRNA_C-linearis_contig97.17097.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=807bp|location=Sequence derived from alignment at C-linearis_contig97:365025..365831- (Chordaria linearis ClinC8C monoicous)GCTGCCGATATTGGAAATCTGGGCCTCGTCAACACTTTGCTCGAGGCTGG
GGCCGACGGGAGCGCAAGGTGGAGGGGATGTCAGGGCCGAACTCTGCTCC
ATGCGGCTGCGGTCGGCGGGAACGTGGAGGTGTTGACGACCCTGCTCGGT
GCAGGAGCTCAGCCGGAC GTGGACTTGATGTGTATGTATCCGCCTAGGTC
GGCTCTGGACGTTGCAGCCTCTTGCGGTCGCGATGGGGGTGGCCAGATGT
TTGCTCCAGGAACTTTTGGAACTTGTTGAGGACAAGTGCGTCTTGCTCGA
AGAAGCAGCTAAAAGTGGTCAGGACAGGTTGTGAACGATCTGCTCATAAT
TGGTGCTGACCCAACTTTGCTTCTAACAACGCAGATGCGACTCCTCTCCA
CGACGCAGCGGCCGGTGGGCATAATGGGGTCGCATTACTTGTTGCTAGCC
GGGGCTGACAAGAATGCCCTAGATGGTCGGGGGCGCTCGCCTTTGGCTGC
CGCTGCCTCGGGTGGGGACGTTTTTACCGCGGAGTTGGGGCTGGCTGCCG
GTGTCGATATCCTAATCCGGGATCCTGTTTATGATCTTTCGGCGGTCGAG
ATGGCCATAATTCGAGGAGAAACTTCTGCCTTCAAGGCCCTCCTTCGACA
CGGGGTGGACGTGAATTATCGACTCAAGTCCACTGGCCACACGGCGCTTC
ACGTTGCTGTCAAGTTCCATCGGGTGGGTGCAATCGACGCCCTTGTGGAA
GCCGGGGCTGACATTGAGCTCAAAGAAAAAGACGGGATGACACCTCTCAA
CGAAGCA back to top Coding sequence (CDS) from alignment at C-linearis_contig97:365025..365831-
>mRNA_C-linearis_contig97.17097.1 ID=mRNA_C-linearis_contig97.17097.1|Name=mRNA_C-linearis_contig97.17097.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1026bp|location=Sequence derived from alignment at C-linearis_contig97:365025..365831- (Chordaria linearis ClinC8C monoicous) GCTGCCGATATTGGAAATCTGGGCCTCGTCAACACTTTGCTCGAGGCTGG GGCCGACGGGAGCGCAAGGTGGAGGGGATGTCAGGGCCGAACTCTGCTCC ATGCGGCTGCGGTCGGCGGGAACGTGGAGGTGTTGACGACCCTGCTCGGT GCAGGAGCTCAGCCGGACGCTGCCGATATTGGAAATCTGGGCCTCGTCAA CACTTTGCTCGAGGCTGGGGCCGACGGGAGCGCAAGGTGGAGGGGATGTC AGGGCCGAACTCTGCTCCATGCGGCTGCGGTCGGCGGGAACGTGGAGGTG TTGACGACCCTGCTCGGTGCAGGAGCTCAGCCGGACAATGCCCTAGATGG TCGGGGGCGCTCGCCTTTGGCTGCCGCTGCCTCGGGTGGGGACGTTTTTA CCGCGGAGTTGGGGCTGGCTGCCGGTGTCGATATCCTAATCCGGGATCCT GTTTATGATCTTTCGGCGGTCGAGATGGCCATAATTCGAGGAGAAACTTC TGCCTTCAAGGCCCTCCTTCGACACGGGGTGGACGTGAATTATCGACTCA AGTCCACTGGCCACACGGCGCTTCACGTTGCTGTCAAGTTCCATCGGGTG GGTGCAATCGACGCCCTTGTGGAAGCCGGGGCTGACATTGAGCTCAAAGA AAAAGACGGGATGACACCTCTCAACGAAGCAAATGCCCTAGATGGTCGGG GGCGCTCGCCTTTGGCTGCCGCTGCCTCGGGTGGGGACGTTTTTACCGCG GAGTTGGGGCTGGCTGCCGGTGTCGATATCCTAATCCGGGATCCTGTTTA TGATCTTTCGGCGGTCGAGATGGCCATAATTCGAGGAGAAACTTCTGCCT TCAAGGCCCTCCTTCGACACGGGGTGGACGTGAATTATCGACTCAAGTCC ACTGGCCACACGGCGCTTCACGTTGCTGTCAAGTTCCATCGGGTGGGTGC AATCGACGCCCTTGTGGAAGCCGGGGCTGACATTGAGCTCAAAGAAAAAG ACGGGATGACACCTCTCAACGAAGCA back to top