Homology
BLAST of mRNA_C-linearis_contig97.17095.1 vs. uniprot
Match:
D7G2Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Q5_ECTSI)
HSP 1 Score: 80.5 bits (197), Expect = 2.360e-14
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -2
Query: 485 LSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 616
+SMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVV LLKA D
Sbjct: 315 VSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 358
BLAST of mRNA_C-linearis_contig97.17095.1 vs. uniprot
Match:
A0A6H5K9L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9L5_9PHAE)
HSP 1 Score: 80.5 bits (197), Expect = 2.440e-14
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = -2
Query: 485 LSMAQRLCRRTGRVVFVSCDLSEDSQILVAAVEAKVVVLLKAND 616
+SMAQRLC+RTGRVVFVSCDLSEDSQILVAAVEAKVV LLKA D
Sbjct: 320 VSMAQRLCKRTGRVVFVSCDLSEDSQILVAAVEAKVVALLKAED 363
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17095.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.36e-14 / Id = 90.91 Expect = 2.44e-14 / Id = 90.91 Sequence D7G2Q5_ECTSI A0A6H5K9L5_9PHAE
Match Name E-value Identity Description
D7G2Q5_ECTSI 2.360e-14 90.91 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5K9L5_9PHAE 2.440e-14 90.91 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 617 Cds size 372 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930828.4817166-UTR-C-linearis_contig97:353763..353786 1622930828.4817166-UTR-C-linearis_contig97:353763..353786 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 353764..353786 + 1690881270.848267-UTR-C-linearis_contig97:353763..353786 1690881270.848267-UTR-C-linearis_contig97:353763..353786 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 353764..353786 + 1622930828.5129077-UTR-C-linearis_contig97:354158..354380 1622930828.5129077-UTR-C-linearis_contig97:354158..354380 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 354159..354380 + 1690881270.8743045-UTR-C-linearis_contig97:354158..354380 1690881270.8743045-UTR-C-linearis_contig97:354158..354380 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 354159..354380 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930828.4951115-CDS-C-linearis_contig97:353786..354158 1622930828.4951115-CDS-C-linearis_contig97:353786..354158 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 353787..354158 + 1690881270.863129-CDS-C-linearis_contig97:353786..354158 1690881270.863129-CDS-C-linearis_contig97:353786..354158 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 353787..354158 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17095.1
>prot_C-linearis_contig97.17095.1 ID=prot_C-linearis_contig97.17095.1|Name=mRNA_C-linearis_contig97.17095.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=124bp
MCFRASGSVTKKSLRQVYARETSWYICTPPAPNHKTIPTTKPYLVLSFQS back to top mRNA from alignment at C-linearis_contig97:353764..354380+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17095.1 ID=mRNA_C-linearis_contig97.17095.1|Name=mRNA_C-linearis_contig97.17095.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at C-linearis_contig97:353764..354380+ (Chordaria linearis ClinC8C monoicous)CAAACACGCGCTGCCATTTCTTT ATGTGCTTTCGTGCAAGTGGTAGCGTG
ACGAAAAAAAGCTTGCGACAGGTCTATGCGCGGGAAACTTCGTGGTACAT
ATGCACTCCGCCCGCCCCAAACCACAAAACAATACCGACAACCAAACCTT
ATCTCGTGTTGAGCTTCCAATCTTGGATCTTTTCACGCCGCAGACGTCAG
ACCAATGGGCAAATCCCTCAGCTCACAAAATGCCATCCGTTAGACGATGT
CAAGAAAAAGGGCTTTCGCTTCTCCTGGCAAACACAAACGCCAAAAAACC
TGGTCCGAGCACTCTTTAAAAAAACACCTACTGCTGTAGAACTTTTCTCT
GTGCCAGCTGCCAACACCACATCTTCCCCAGCACAACAGCAGTGA CAGAA
GCTCGACACTTCTAGTCTCCTCACAAGGATCAATCTACACCTTCTCCCCG
CCCGGCACGACCCCTAAATAATACACCAGCGTCAATCATTAGCTTTGAGC
AGCACGACCACCTTCGCCTCCACCGCCGCCACCAGAATCTGCGAGTCCTC
CGACAAGTCGCAGCTCACGAACACCACTCTCCCGGTGCGCCTGCACAGCC
TCTGCGCCATGCTCAGG back to top Coding sequence (CDS) from alignment at C-linearis_contig97:353764..354380+
>mRNA_C-linearis_contig97.17095.1 ID=mRNA_C-linearis_contig97.17095.1|Name=mRNA_C-linearis_contig97.17095.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at C-linearis_contig97:353764..354380+ (Chordaria linearis ClinC8C monoicous) back to top