mRNA_C-linearis_contig97.17093.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17093.1
Unique NamemRNA_C-linearis_contig97.17093.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: D7G2Q4_ECTSI (Fatty acid hydroxylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q4_ECTSI)

HSP 1 Score: 419 bits (1076), Expect = 7.880e-141
Identity = 235/309 (76.05%), Postives = 259/309 (83.82%), Query Frame = 3
Query:  321 MSWV----LAEGVLADVLLKGAGGA-AFSLVNS-DTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEKGSVGEQ--NGGSGSIQASDAALAGSAAAENKEKAG 1223
            MSW     L +G+LADVL+KGAGG  AFSLVN+ DTW+WWHYPAWLS+ILLG E +A +VHV+GRAS+ ATIR RGKHLDEF PLD  FV FNRC TA+FTYHA+QYLWY PWGGRV WG+SELGLASGLGA VA        XXXXXXXXXXXXXXXXXXXXXXRQKAP+RGNADAVNVHP EF+ GEYNHLLALHLVSR+VVPVHVV+AGAFIVAGGF ASLNHTRFD+RIPFLYEVRYHDIHHWYPECNYGQYTMLWDW+MGSLK YP E+   GE+  N G G    ++ A + S AAENKEKAG
Sbjct:    1 MSWFPTLPLLDGLLADVLVKGAGGGVAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGVSELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWVMGSLKAYPAEE-DRGERKRNLGGGVTPPANGARSDSTAAENKEKAG 308          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A4D9CVT2_9STRA (Fatty acid hydroxylase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVT2_9STRA)

HSP 1 Score: 259 bits (661), Expect = 1.030e-78
Identity = 129/264 (48.86%), Postives = 164/264 (62.12%), Query Frame = 3
Query:  354 DVLLKGAGGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIP----FLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEKGSV 1133
            D+ L+GAGG AF L N+ TW   H+ AW  ++L G EI+A LV  +GR  RV +I  RGKHLD  +  D  F+ FN+  T LF+YH +++LW      +V W + E+   +   A   L                             RQKAPSRGN DAVNVHP EFV GEYNHL A++LVSRF++PVH + A AFIV GGFLASLNHTRFD++ P     +Y+VR+HD+HHW+PE NYGQY MLWD++ GS KPYP  KG+ 
Sbjct:   19 DLFLRGAGGGAFLLWNAHTWLSHHFIAWGLLVLAGLEILACLVFAFGRLRRVPSIPMRGKHLDTLDTRDLGFIAFNKLATTLFSYHLLRFLWLSKGPAQVAWRVEEMTWQNTCLALPLLFVVYDFAYTLFHRALHHRALYKHIHKHHHRQKAPSRGNTDAVNVHPVEFVAGEYNHLAAIYLVSRFLLPVHALTALAFIVLGGFLASLNHTRFDIQTPGVLSSVYQVRFHDVHHWFPESNYGQYLMLWDYVFGSFKPYPEVKGAA 282          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A835Z0N4_9STRA (Fatty acid hydroxylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N4_9STRA)

HSP 1 Score: 222 bits (565), Expect = 5.120e-64
Identity = 133/314 (42.36%), Postives = 170/314 (54.14%), Query Frame = 3
Query:  333 LAEGVLADVLLKGAGGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNA----DAVNVHPFEFVCGEYNHLLAL----------------------------------------HLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEKGSVGEQ 1142
            +  G+  ++LL+  G AAF L     W  WH   W+ ++L G E+++ L    GRAS    I  RGKHLD  E  D AF+ FN+ CT LFTY  ++ +W  P G R+ W L +   A+ +GA +AL                   XXXXXXXXXX              DAVNV+PFEF+ GEYNHLLA+                                         LVSRFVVPVHV AA  F++AGGF+ASLNHTR+DVR+  +Y+VRYHD+HHWYP+CN+GQYTMLWD   GS + +P  +GS G Q
Sbjct:    1 MVAGLAGELLLRLGGAAAFVLQGERQWEPWHIALWIVVLLAGLELLSVLTFALGRASGAKLIPHRGKHLDRLEATDVAFIAFNKLCTTLFTYQWLRVMWEQPLGMRMVWALGDADAANTVGATLALYVVFDLFYTLFHRALHHRSXXXXXXXXXXXXXXXXXXXXXXXXDAVNVYPFEFLSGEYNHLLAILRPIFXXXXXXXXXXXGGDDXXXXXXXXXXXXXXXXXXXXFLVSRFVVPVHVAAAAVFVIAGGFMASLNHTRYDVRVGSVYQVRYHDMHHWYPDCNFGQYTMLWDRAFGSFRHFP--EGSEGVQ 312          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S4IH56_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IH56_9EUKA)

HSP 1 Score: 209 bits (533), Expect = 2.770e-60
Identity = 105/248 (42.34%), Postives = 144/248 (58.06%), Query Frame = 3
Query:  375 GGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPV 1118
            G  AF +  S  W W+   AW+  I+   EI++ +V +       + I ++GK LDE   +D  ++ FNR CT +FT+  IQ+ WY     +V W L  LG+ + LGA VA+                             RQ  P+RGN DA+NVHP EFV GEYNHLL ++LVSR V+ +HV++   F++ G  LASLNHTRFD+++  L++V+YHDIHHWYP  N+GQYTMLWD + G  K YP 
Sbjct:   11 GAVAFIMFESQYWEWYQICAWVVGIIAALEILSRVVMI--AQPFFSVIPAKGKPLDELATIDLCYIWFNRLCTPVFTFQVIQFCWYSS---QVVWALDSLGILNTLGAMVAMFIVYDFFYAIYHRSLHIRGIYKYIHKHHHRQTVPTRGNVDAINVHPVEFVMGEYNHLLVMYLVSR-VIEIHVLSVLLFLLIGATLASLNHTRFDIQVSKLFQVKYHDIHHWYPYANFGQYTMLWDHVFGWFKDYPT 252          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S2TQE1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQE1_9EUKA)

HSP 1 Score: 205 bits (522), Expect = 1.910e-58
Identity = 115/245 (46.94%), Postives = 153/245 (62.45%), Query Frame = 3
Query:  393 LVNSDTWRWWHYPAWLSIILLGFEIMATLV-HVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEK 1124
            L ++ TW WWH+  +  +I LG E++  LV + +  A+++     RGKHLDEFE +D AF+ FN+    +FTYH I++ +       + W + +LG+ +G  + VA+               X  XXXXXXX    RQ+AP+RGN DA+NVHPFEFV GEY HL+A  LVSR V+ +HV A   F+  GG LASLNHTR+D+    +Y V+ HD+HH  PE NYGQY MLWD LMGS KPY  EK
Sbjct:   30 LHDASTWEWWHFAGFALVIYLGLELLNVLVINAFSSANQIPI---RGKHLDEFEFIDNAFIQFNKLAIIVFTYHMIRFTFTAK---NICWDIRDLGILNGPSSLVAMHIVYDFFYTLFHRFLXNRXXXXXXXKHHHRQRAPTRGNLDAINVHPFEFVVGEYIHLVAAFLVSR-VMTIHVGAIAWFVAVGGLLASLNHTRYDLSFLGVYSVKVHDVHHRLPESNYGQYIMLWDKLMGSYKPYTTEK 267          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S0W795_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W795_9CRYP)

HSP 1 Score: 202 bits (513), Expect = 3.510e-57
Identity = 113/248 (45.56%), Postives = 147/248 (59.27%), Query Frame = 3
Query:  381 AAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEK 1124
            AAF   ++ TW    Y +W ++I+LG EI+A LV    +      +  RG HLD     D AF+ +N+ CTA+FTYHA+++ WY      V WGL EL L + + A   L                       XXXXXX Q APSRG ADAVNVHPFEFVCGEY HLLA+     F+VP H++ A  F+V GG +ASLNHTRF+V +  +++V++HD HH  P  NYGQY MLWD++ G+   YP EK
Sbjct:   27 AAFKFWDASTWTPLQYLSWCTVIVLGLEIVAWLVSNIPKLFNTVILPKRGSHLDVLTSKDIAFICWNKFCTAVFTYHALRFCWYSK---TVKWGLDELTLLNTVVALGGLFVVYDFFYHIFHRALHLRSVYKYXXXXXXNQHAPSRGTADAVNVHPFEFVCGEYCHLLAI-----FLVPCHIMTAALFVVGGGVVASLNHTRFNVSLLNVFDVKFHDQHHVVPTVNYGQYIMLWDYVFGTYHEYPHEK 266          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S1U5D6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5D6_9STRA)

HSP 1 Score: 199 bits (507), Expect = 1.360e-56
Identity = 106/250 (42.40%), Postives = 142/250 (56.80%), Query Frame = 3
Query:  363 LKGAGGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPY 1112
            ++  G AA  L+ ++TW W     +  ++L G E+++  V      S    I  +GKH D+    D  F+ FN+    +FT+H + Y+W  P   +V W L +    +   A   L                              QKAPSRGN DAVNVHPFEFVCGEYNH+LAL +++ F+  VHV+AAG FI+AGG LASLNHTR+DV IP +Y+V+YHD+HH  P+ NYGQY MLWD LMGS + Y
Sbjct:    4 MERIGAAAVELMEAETWSWPVRIGYTVVVLGGLELVSRFVLT--AFSGAEKIPIKGKHHDKLTTKDKCFIAFNKATVVVFTWHMLSYIWQNP---KVVWALEDATALNTAAAAALLYVVYDFFYTLFHRFLHVKAIYGYVHKHHHIQKAPSRGNVDAVNVHPFEFVCGEYNHILALFILTTFM-EVHVLAAGLFILAGGALASLNHTRYDVSIPGIYDVKYHDVHHRIPQSNYGQYIMLWDHLMGSFREY 247          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A061SG51_9CHLO (C-5 sterol desaturase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SG51_9CHLO)

HSP 1 Score: 197 bits (500), Expect = 4.870e-55
Identity = 113/271 (41.70%), Postives = 145/271 (53.51%), Query Frame = 3
Query:  375 GGAAFSLVNSDTW----------RWWHYPAWLSIILLGFEIMATLVHVYGRA-------SRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVR---IPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEKG 1127
            GG  F  V+S  +           WW Y  +   ++L  E+++  V   G              I +RG+HLD  E  D  F+ FNR  T +FT+HA+Q+LW  P   RV WG  +   AS L A  A+                             RQ APSRGN DAVNVHPFEF+ GEYNHL A+  VSR  VPVH  AA  FIV+GG LASLNHTR D+    +P+L++V+YHD+HHW P  N+GQYTM+WD++  S + YP E G
Sbjct:    9 GGFLFKAVSSAIFFADKLFSLGGEWWMYALFGLAVVLAMELLSASVPRIGSVILTLQGRRNTGLIPARGRHLDALEATDYVFIAFNRLTTPVFTFHAMQFLWQSP---RVVWGARDATAASVLLALAAMFVVYDSTYCLFHRALHHRSVYKHVHKHHHRQMAPSRGNVDAVNVHPFEFLPGEYNHLFAIWAVSR-AVPVHAGAALLFIVSGGVLASLNHTRLDIASPVLPWLFKVKYHDVHHWDPSVNFGQYTMIWDYVFRSFRAYPGEGG 275          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: L1JK92_GUITC (Fatty acid hydroxylase domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JK92_GUITC)

HSP 1 Score: 192 bits (489), Expect = 3.770e-54
Identity = 101/232 (43.53%), Postives = 135/232 (58.19%), Query Frame = 3
Query:  426 YPAWLSIILLGFEIMATLVH-VYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPV 1118
            Y  W  +ILLG E+M+ LV+ +  R    + I  RGKHLD     D +F+T+N+  T LFTYHA+++ W  P   R+ WG SE+ + + + AF +L                              Q APSRGNADAVNVHP EF+ GEY HLLA+     F++P H V A  F+V GG LASLNHTR+D+ +P L++ + HD HH  P  NYGQYTMLWD + G+  P+P+
Sbjct:    4 YALWSVVILLGLELMSYLVNEIPQRFFNPSAIPIRGKHLDVLSWKDISFITWNKFTTTLFTYHALRFCWLSP---RIAWGWSEMTILNTVIAFFSLFVVYDFFYCIWHRILHVRGLYKFIHKHHHHQAAPSRGNADAVNVHPIEFIVGEYCHLLAI-----FIIPCHAVVAAVFVVLGGILASLNHTRYDIAVPLLFDTKAHDQHHVIPTVNYGQYTMLWDRVFGTYVPHPL 227          
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S0GVS8_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GVS8_9EUKA)

HSP 1 Score: 193 bits (490), Expect = 7.530e-54
Identity = 102/246 (41.46%), Postives = 140/246 (56.91%), Query Frame = 3
Query:  387 FSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEK 1124
            F +    TW+ WH+  +  +I LG EI++ +V +  + ++   I  RGKHLD FE +D  ++  N+  TA+F YH ++Y+        V W +  L + +   + V +                             RQ+AP+RGN DA+NVHPFEFV GEY HLLA HLV++++V VH+VA   F+V GG LASLNHTRFD     +Y V+ HD+HH  PE NYGQY MLWD +MGS KPY   K
Sbjct:   25 FVIHQPGTWQVWHFGVFSVVIYLGMEILSHIVPLVFQ-NKTNLIPMRGKHLDVFETVDHVYININKIATAVFVYHMLKYVN----AANVEWDIGGLSVVNFPVSVVLMHIVYDFFYTIFHRVLHNRQLYRFVHKHHHRQRAPTRGNLDAINVHPFEFVVGEYLHLLAAHLVTKYLVKVHIVAIAWFVVVGGILASLNHTRFDFSFLGIYSVKVHDVHHRLPESNYGQYIMLWDKIMGSYKPYVEPK 265          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2Q4_ECTSI7.880e-14176.05Fatty acid hydroxylase domain-containing protein n... [more]
A0A4D9CVT2_9STRA1.030e-7848.86Fatty acid hydroxylase domain-containing protein n... [more]
A0A835Z0N4_9STRA5.120e-6442.36Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S4IH56_9EUKA2.770e-6042.34Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A7S2TQE1_9EUKA1.910e-5846.94Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A7S0W795_9CRYP3.510e-5745.56Hypothetical protein n=1 Tax=Hemiselmis tepida Tax... [more]
A0A7S1U5D6_9STRA1.360e-5642.40Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A061SG51_9CHLO4.870e-5541.70C-5 sterol desaturase n=2 Tax=Tetraselmis sp. GSL0... [more]
L1JK92_GUITC3.770e-5443.53Fatty acid hydroxylase domain-containing protein n... [more]
A0A7S0GVS8_9EUKA7.530e-5441.46Hypothetical protein n=2 Tax=Amorphochlora amoebif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:351525..353615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score419.9
Seed ortholog evalue1e-114
Seed eggNOG ortholog2880.D7G2Q4
KEGG rclassRC00904
KEGG koko:K00227
KEGG ReactionR07215,R07486,R07491,R07505
KEGG Pathwayko00100,ko01100,ko01110,ko01130,map00100,map01100,map01110,map01130
KEGG ModuleM00101,M00102
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.C-5 sterol desaturase activity
EggNOG OGsCOG3000@1,KOG0872@2759
Ec32 ortholog descriptionFatty acid hydroxylase
Ec32 orthologEc-11_003100.1
EC1.14.19.20
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size1708
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17093.1prot_C-linearis_contig97.17093.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 351845..353133 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.3997505-UTR-C-linearis_contig97:351524..3518441622930834.3997505-UTR-C-linearis_contig97:351524..351844Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 351525..351844 +
1690881273.7823687-UTR-C-linearis_contig97:351524..3518441690881273.7823687-UTR-C-linearis_contig97:351524..351844Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 351525..351844 +
1622930834.449682-UTR-C-linearis_contig97:353133..3536151622930834.449682-UTR-C-linearis_contig97:353133..353615Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 353134..353615 +
1690881273.8226097-UTR-C-linearis_contig97:353133..3536151690881273.8226097-UTR-C-linearis_contig97:353133..353615Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 353134..353615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.415461-CDS-C-linearis_contig97:351844..3525401622930834.415461-CDS-C-linearis_contig97:351844..352540Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 351845..352540 +
1690881273.8011808-CDS-C-linearis_contig97:351844..3525401690881273.8011808-CDS-C-linearis_contig97:351844..352540Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 351845..352540 +
1622930834.432036-CDS-C-linearis_contig97:352923..3531331622930834.432036-CDS-C-linearis_contig97:352923..353133Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 352924..353133 +
1690881273.8112988-CDS-C-linearis_contig97:352923..3531331690881273.8112988-CDS-C-linearis_contig97:352923..353133Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 352924..353133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17093.1

>prot_C-linearis_contig97.17093.1 ID=prot_C-linearis_contig97.17093.1|Name=mRNA_C-linearis_contig97.17093.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp
MSWVLAEGVLADVLLKGAGGAAFSLVNSDTWRWWHYPAWLSIILLGFEIM
ATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQ
YLWYGPWGGRVGWGLSELGLASGLGAFVALYVVYDLFYTVFHRVLHLRGL
YKHVHKHHHRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPV
HVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQY
TMLWDWLMGSLKPYPVEKGSVGEQNGGSGSIQASDAALAGSAAAENKEKA
G*
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mRNA from alignment at C-linearis_contig97:351525..353615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17093.1 ID=mRNA_C-linearis_contig97.17093.1|Name=mRNA_C-linearis_contig97.17093.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2091bp|location=Sequence derived from alignment at C-linearis_contig97:351525..353615+ (Chordaria linearis ClinC8C monoicous)
GCTGGCGATGACCACAGCAGAGCACACAGACAGCAGTGGATGCTTACTAG CAGAGAGTGGCGACGTCCATAGAGAAGCCGAGCAAGACGAGTCTCTGTTT GTCGTCAAAGCACAACAGCTAAGAGCAAGCAGATCAAGACCAACGCAAAT TGTTCCAAGAACGCCCTGCTGCGACTTGCCTGGCAACGTGTGTCCGTGAA GACAAGACTTTGGGGGCGGGCGCTGGGCCTGCAGCAAGCAGCAATCGATT CAGGAAGTCCTTCAATTGAACGACCAATCCAGTCTCACAGCGGTGCCTCG GCTAAAACGATTAAGAAGGCATGTCGTGGGTCTTAGCGGAGGGGGTGCTG GCGGATGTTCTGCTCAAGGGAGCAGGAGGAGCAGCCTTCTCCCTCGTCAA CTCGGACACCTGGCGATGGTGGCATTACCCGGCCTGGCTGTCCATCATCC TGCTGGGCTTCGAGATCATGGCAACGCTGGTCCACGTATATGGTCGGGCG TCTAGGGTCGCCACCATCCGCTCTCGCGGGAAGCACCTCGACGAGTTTGA ACCGTTAGACACGGCGTTCGTGACGTTCAACCGCTGCTGCACCGCGCTCT TCACCTACCACGCCATCCAGTACCTGTGGTACGGTCCATGGGGCGGACGG GTCGGCTGGGGCCTCTCGGAGCTGGGGCTCGCGAGTGGACTGGGCGCCTT CGTGGCGCTGTACGTGGTGTACGACCTCTTCTACACCGTGTTTCACAGGG TGCTGCACCTGCGAGGGCTATACAAGCACGTGCACAAGCACCACCACCGC CAGAAAGCGCCGTCGAGAGGCAACGCCGACGCCGTCAACGTGCACCCCTT CGAGTTCGTCTGCGGGGAGTACAACCACCTCTTGGCGCTGCACCTGGTCT CGAGGTTCGTGGTGCCCGTGCATGTGGTGGCGGCCGGCGCGTTCATCGTC GCGGGAGGTTTCCTGGCGTCGCTAAACCATACGAGGTTCGACGTCCGCAT CCCCTTCTTGTACGAGGTACGACTTGTCATGTCATGAGTCACTTGTTGCC CGTCAGATGCCTTGTTGTTGTTGCTCTCTATAAAGTATCGATGGTACATA TCGTTTAAAAAGGACCTGGTAAGAGTCTGCAGCTGAGGTTTGGGAACTCT GCTGGTTTTCACGGAACAAAAGAGGCGTATGAACGTTGTTGTCGCCTGCC TGTCCCGTGGGTCTCGTGGTTCCGCCACCTTATGCGCGCCAACATTTGTT TTGCGAAGTTGATCGAAGCGATAATGGCCGACACGGATATGCCTCTTGCT GGTACAATCTGGTGCCGCGATTTTCATGCTGTCCCCGCCCCACGCTCAAC GTCAACATTGGTTCCACTGCCTCCCTTCTCCTCTCTTCGTATCCTGAAGG TGCGGTATCACGACATCCACCACTGGTATCCGGAGTGCAACTACGGACAG TACACCATGTTATGGGACTGGTTGATGGGGAGTCTGAAGCCATATCCCGT AGAGAAGGGTAGTGTCGGCGAGCAAAACGGCGGGAGCGGAAGTATTCAAG CAAGCGACGCGGCTCTAGCTGGCAGTGCCGCTGCAGAAAACAAGGAGAAA GCGGGCTAGTACTTCCGTAACCTACAGCAGCGATCGCGAGAGCAGGAAGG CGGGGAAAGGGAGCTGGACGGTGCCGCCGGAGTTGCAGTTGCACTCCCTC CTCGTGGACTCTTGGTGGTGGCTGTGGTTTTTGCGTCGGAAATCCTGCCC GAGCGTGCTGGCGTTTCTGAGTGGTGTTATGTCGAAAGTGTTGGTATCGA TTCTACGGCGTTTTTGTGTTTGTGTTTTAAGCCGCGGCAAATTGTATCCT TGCACGCCTTGTTTTGAGGCATTGTTTTCGTCTAGGGCTGCGTGGCTGTA CATAAAGTTGGTGCTATGCTTACCCTGCTGCTGACTCTCCGAAGTACGTG CGGATTCAGTTGATGTGTCATATTTCAGGAGTCTCTCTATGCTTGTGTGC TGCGTCTGCCCTCATAGCAATCACTGTTCAAGGCAATCTTCTGCGCGGAT TTGCGGCACACGGGGGTCCGATTAGCAGGACATACACCGCG
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Coding sequence (CDS) from alignment at C-linearis_contig97:351525..353615+

>mRNA_C-linearis_contig97.17093.1 ID=mRNA_C-linearis_contig97.17093.1|Name=mRNA_C-linearis_contig97.17093.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig97:351525..353615+ (Chordaria linearis ClinC8C monoicous)
ATGTCGTGGGTCTTAGCGGAGGGGGTGCTGGCGGATGTTCTGCTCAAGGG
AGCAGGAGGAGCAGCCTTCTCCCTCGTCAACTCGGACACCTGGCGATGGT
GGCATTACCCGGCCTGGCTGTCCATCATCCTGCTGGGCTTCGAGATCATG
GCAACGCTGGTCCACGTATATGGTCGGGCGTCTAGGGTCGCCACCATCCG
CTCTCGCGGGAAGCACCTCGACGAGTTTGAACCGTTAGACACGGCGTTCG
TGACGTTCAACCGCTGCTGCACCGCGCTCTTCACCTACCACGCCATCCAG
TACCTGTGGTACGGTCCATGGGGCGGACGGGTCGGCTGGGGCCTCTCGGA
GCTGGGGCTCGCGAGTGGACTGGGCGCCTTCGTGGCGCTGTACGTGGTGT
ACGACCTCTTCTACACCGTGTTTCACAGGGTGCTGCACCTGCGAGGGCTA
TACAAGCACGTGCACAAGCACCACCACCGCCAGAAAGCGCCGTCGAGAGG
CAACGCCGACGCCGTCAACGTGCACCCCTTCGAGTTCGTCTGCGGGGAGT
ACAACCACCTCTTGGCGCTGCACCTGGTCTCGAGGTTCGTGGTGCCCGTG
CATGTGGTGGCGGCCGGCGCGTTCATCGTCGCGGGAGGTTTCCTGGCGTC
GCTAAACCATACGAGGTTCGACGTCCGCATCCCCTTCTTGTACGAGATGT
CGTGGGTCTTAGCGGAGGGGGTGCTGGCGGATGTTCTGCTCAAGGGAGCA
GGAGGAGCAGCCTTCTCCCTCGTCAACTCGGACACCTGGCGATGGTGGCA
TTACCCGGCCTGGCTGTCCATCATCCTGCTGGGCTTCGAGATCATGGCAA
CGCTGGTCCACGTATATGGTCGGGCGTCTAGGGTCGCCACCATCCGCTCT
CGCGGGAAGCACCTCGACGAGTTTGAACCGTTAGACACGGCGTTCGTGAC
GTTCAACCGCTGCTGCACCGCGCTCTTCACCTACCACGCCATCCAGTACC
TGTGGTACGGTCCATGGGGCGGACGGGTCGGCTGGGGCCTCTCGGAGCTG
GGGCTCGCGAGTGGACTGGGCGCCTTCGTGGCGCTGTACGTGGTGTACGA
CCTCTTCTACACCGTGTTTCACAGGGTGCTGCACCTGCGAGGGCTATACA
AGCACGTGCACAAGCACCACCACCGCCAGAAAGCGCCGTCGAGAGGCAAC
GCCGACGCCGTCAACGTGCACCCCTTCGAGTTCGTCTGCGGGGAGTACAA
CCACCTCTTGGCGCTGCACCTGGTCTCGAGGTTCGTGGTGCCCGTGCATG
TGGTGGCGGCCGGCGCGTTCATCGTCGCGGGAGGTTTCCTGGCGTCGCTA
AACCATACGAGGTTCGACGTCCGCATCCCCTTCTTGTACGAGGTGCGGTA
TCACGACATCCACCACTGGTATCCGGAGTGCAACTACGGACAGTACACCA
TGTTATGGGACTGGTTGATGGGGAGTCTGAAGCCATATCCCGTAGAGAAG
GGTAGTGTCGGCGAGCAAAACGGCGGGAGCGGAAGTATTCAAGCAAGCGA
CGCGGCTCTAGCTGGCAGTGCCGCTGCAGAAAACAAGGAGAAAGCGGGCT
AGGTGCGGTATCACGACATCCACCACTGGTATCCGGAGTGCAACTACGGA
CAGTACACCATGTTATGGGACTGGTTGATGGGGAGTCTGAAGCCATATCC
CGTAGAGAAGGGTAGTGTCGGCGAGCAAAACGGCGGGAGCGGAAGTATTC
AAGCAAGCGACGCGGCTCTAGCTGGCAGTGCCGCTGCAGAAAACAAGGAG
AAAGCGGGCTAG
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