mRNA_C-linearis_contig97.17093.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: D7G2Q4_ECTSI (Fatty acid hydroxylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Q4_ECTSI) HSP 1 Score: 419 bits (1076), Expect = 7.880e-141 Identity = 235/309 (76.05%), Postives = 259/309 (83.82%), Query Frame = 3 Query: 321 MSWV----LAEGVLADVLLKGAGGA-AFSLVNS-DTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEKGSVGEQ--NGGSGSIQASDAALAGSAAAENKEKAG 1223 MSW L +G+LADVL+KGAGG AFSLVN+ DTW+WWHYPAWLS+ILLG E +A +VHV+GRAS+ ATIR RGKHLDEF PLD FV FNRC TA+FTYHA+QYLWY PWGGRV WG+SELGLASGLGA VA XXXXXXXXXXXXXXXXXXXXXXRQKAP+RGNADAVNVHP EF+ GEYNHLLALHLVSR+VVPVHVV+AGAFIVAGGF ASLNHTRFD+RIPFLYEVRYHDIHHWYPECNYGQYTMLWDW+MGSLK YP E+ GE+ N G G ++ A + S AAENKEKAG Sbjct: 1 MSWFPTLPLLDGLLADVLVKGAGGGVAFSLVNAADTWQWWHYPAWLSVILLGLEFVAAMVHVFGRASKAATIRPRGKHLDEFTPLDRLFVAFNRCSTAVFTYHAVQYLWYAPWGGRVAWGVSELGLASGLGALVAQYVVYDLFXXXXXXXXXXXXXXXXXXXXXXRQKAPTRGNADAVNVHPLEFLGGEYNHLLALHLVSRYVVPVHVVSAGAFIVAGGFFASLNHTRFDIRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWVMGSLKAYPAEE-DRGERKRNLGGGVTPPANGARSDSTAAENKEKAG 308
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A4D9CVT2_9STRA (Fatty acid hydroxylase domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVT2_9STRA) HSP 1 Score: 259 bits (661), Expect = 1.030e-78 Identity = 129/264 (48.86%), Postives = 164/264 (62.12%), Query Frame = 3 Query: 354 DVLLKGAGGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIP----FLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEKGSV 1133 D+ L+GAGG AF L N+ TW H+ AW ++L G EI+A LV +GR RV +I RGKHLD + D F+ FN+ T LF+YH +++LW +V W + E+ + A L RQKAPSRGN DAVNVHP EFV GEYNHL A++LVSRF++PVH + A AFIV GGFLASLNHTRFD++ P +Y+VR+HD+HHW+PE NYGQY MLWD++ GS KPYP KG+ Sbjct: 19 DLFLRGAGGGAFLLWNAHTWLSHHFIAWGLLVLAGLEILACLVFAFGRLRRVPSIPMRGKHLDTLDTRDLGFIAFNKLATTLFSYHLLRFLWLSKGPAQVAWRVEEMTWQNTCLALPLLFVVYDFAYTLFHRALHHRALYKHIHKHHHRQKAPSRGNTDAVNVHPVEFVAGEYNHLAAIYLVSRFLLPVHALTALAFIVLGGFLASLNHTRFDIQTPGVLSSVYQVRFHDVHHWFPESNYGQYLMLWDYVFGSFKPYPEVKGAA 282
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A835Z0N4_9STRA (Fatty acid hydroxylase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N4_9STRA) HSP 1 Score: 222 bits (565), Expect = 5.120e-64 Identity = 133/314 (42.36%), Postives = 170/314 (54.14%), Query Frame = 3 Query: 333 LAEGVLADVLLKGAGGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNA----DAVNVHPFEFVCGEYNHLLAL----------------------------------------HLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEKGSVGEQ 1142 + G+ ++LL+ G AAF L W WH W+ ++L G E+++ L GRAS I RGKHLD E D AF+ FN+ CT LFTY ++ +W P G R+ W L + A+ +GA +AL XXXXXXXXXX DAVNV+PFEF+ GEYNHLLA+ LVSRFVVPVHV AA F++AGGF+ASLNHTR+DVR+ +Y+VRYHD+HHWYP+CN+GQYTMLWD GS + +P +GS G Q Sbjct: 1 MVAGLAGELLLRLGGAAAFVLQGERQWEPWHIALWIVVLLAGLELLSVLTFALGRASGAKLIPHRGKHLDRLEATDVAFIAFNKLCTTLFTYQWLRVMWEQPLGMRMVWALGDADAANTVGATLALYVVFDLFYTLFHRALHHRSXXXXXXXXXXXXXXXXXXXXXXXXDAVNVYPFEFLSGEYNHLLAILRPIFXXXXXXXXXXXGGDDXXXXXXXXXXXXXXXXXXXXFLVSRFVVPVHVAAAAVFVIAGGFMASLNHTRYDVRVGSVYQVRYHDMHHWYPDCNFGQYTMLWDRAFGSFRHFP--EGSEGVQ 312
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S4IH56_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IH56_9EUKA) HSP 1 Score: 209 bits (533), Expect = 2.770e-60 Identity = 105/248 (42.34%), Postives = 144/248 (58.06%), Query Frame = 3 Query: 375 GGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPV 1118 G AF + S W W+ AW+ I+ EI++ +V + + I ++GK LDE +D ++ FNR CT +FT+ IQ+ WY +V W L LG+ + LGA VA+ RQ P+RGN DA+NVHP EFV GEYNHLL ++LVSR V+ +HV++ F++ G LASLNHTRFD+++ L++V+YHDIHHWYP N+GQYTMLWD + G K YP Sbjct: 11 GAVAFIMFESQYWEWYQICAWVVGIIAALEILSRVVMI--AQPFFSVIPAKGKPLDELATIDLCYIWFNRLCTPVFTFQVIQFCWYSS---QVVWALDSLGILNTLGAMVAMFIVYDFFYAIYHRSLHIRGIYKYIHKHHHRQTVPTRGNVDAINVHPVEFVMGEYNHLLVMYLVSR-VIEIHVLSVLLFLLIGATLASLNHTRFDIQVSKLFQVKYHDIHHWYPYANFGQYTMLWDHVFGWFKDYPT 252
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S2TQE1_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TQE1_9EUKA) HSP 1 Score: 205 bits (522), Expect = 1.910e-58 Identity = 115/245 (46.94%), Postives = 153/245 (62.45%), Query Frame = 3 Query: 393 LVNSDTWRWWHYPAWLSIILLGFEIMATLV-HVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEK 1124 L ++ TW WWH+ + +I LG E++ LV + + A+++ RGKHLDEFE +D AF+ FN+ +FTYH I++ + + W + +LG+ +G + VA+ X XXXXXXX RQ+AP+RGN DA+NVHPFEFV GEY HL+A LVSR V+ +HV A F+ GG LASLNHTR+D+ +Y V+ HD+HH PE NYGQY MLWD LMGS KPY EK Sbjct: 30 LHDASTWEWWHFAGFALVIYLGLELLNVLVINAFSSANQIPI---RGKHLDEFEFIDNAFIQFNKLAIIVFTYHMIRFTFTAK---NICWDIRDLGILNGPSSLVAMHIVYDFFYTLFHRFLXNRXXXXXXXKHHHRQRAPTRGNLDAINVHPFEFVVGEYIHLVAAFLVSR-VMTIHVGAIAWFVAVGGLLASLNHTRYDLSFLGVYSVKVHDVHHRLPESNYGQYIMLWDKLMGSYKPYTTEK 267
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S0W795_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W795_9CRYP) HSP 1 Score: 202 bits (513), Expect = 3.510e-57 Identity = 113/248 (45.56%), Postives = 147/248 (59.27%), Query Frame = 3 Query: 381 AAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEK 1124 AAF ++ TW Y +W ++I+LG EI+A LV + + RG HLD D AF+ +N+ CTA+FTYHA+++ WY V WGL EL L + + A L XXXXXX Q APSRG ADAVNVHPFEFVCGEY HLLA+ F+VP H++ A F+V GG +ASLNHTRF+V + +++V++HD HH P NYGQY MLWD++ G+ YP EK Sbjct: 27 AAFKFWDASTWTPLQYLSWCTVIVLGLEIVAWLVSNIPKLFNTVILPKRGSHLDVLTSKDIAFICWNKFCTAVFTYHALRFCWYSK---TVKWGLDELTLLNTVVALGGLFVVYDFFYHIFHRALHLRSVYKYXXXXXXNQHAPSRGTADAVNVHPFEFVCGEYCHLLAI-----FLVPCHIMTAALFVVGGGVVASLNHTRFNVSLLNVFDVKFHDQHHVVPTVNYGQYIMLWDYVFGTYHEYPHEK 266
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S1U5D6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5D6_9STRA) HSP 1 Score: 199 bits (507), Expect = 1.360e-56 Identity = 106/250 (42.40%), Postives = 142/250 (56.80%), Query Frame = 3 Query: 363 LKGAGGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPY 1112 ++ G AA L+ ++TW W + ++L G E+++ V S I +GKH D+ D F+ FN+ +FT+H + Y+W P +V W L + + A L QKAPSRGN DAVNVHPFEFVCGEYNH+LAL +++ F+ VHV+AAG FI+AGG LASLNHTR+DV IP +Y+V+YHD+HH P+ NYGQY MLWD LMGS + Y Sbjct: 4 MERIGAAAVELMEAETWSWPVRIGYTVVVLGGLELVSRFVLT--AFSGAEKIPIKGKHHDKLTTKDKCFIAFNKATVVVFTWHMLSYIWQNP---KVVWALEDATALNTAAAAALLYVVYDFFYTLFHRFLHVKAIYGYVHKHHHIQKAPSRGNVDAVNVHPFEFVCGEYNHILALFILTTFM-EVHVLAAGLFILAGGALASLNHTRYDVSIPGIYDVKYHDVHHRIPQSNYGQYIMLWDHLMGSFREY 247
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A061SG51_9CHLO (C-5 sterol desaturase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SG51_9CHLO) HSP 1 Score: 197 bits (500), Expect = 4.870e-55 Identity = 113/271 (41.70%), Postives = 145/271 (53.51%), Query Frame = 3 Query: 375 GGAAFSLVNSDTW----------RWWHYPAWLSIILLGFEIMATLVHVYGRA-------SRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVR---IPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEKG 1127 GG F V+S + WW Y + ++L E+++ V G I +RG+HLD E D F+ FNR T +FT+HA+Q+LW P RV WG + AS L A A+ RQ APSRGN DAVNVHPFEF+ GEYNHL A+ VSR VPVH AA FIV+GG LASLNHTR D+ +P+L++V+YHD+HHW P N+GQYTM+WD++ S + YP E G Sbjct: 9 GGFLFKAVSSAIFFADKLFSLGGEWWMYALFGLAVVLAMELLSASVPRIGSVILTLQGRRNTGLIPARGRHLDALEATDYVFIAFNRLTTPVFTFHAMQFLWQSP---RVVWGARDATAASVLLALAAMFVVYDSTYCLFHRALHHRSVYKHVHKHHHRQMAPSRGNVDAVNVHPFEFLPGEYNHLFAIWAVSR-AVPVHAGAALLFIVSGGVLASLNHTRLDIASPVLPWLFKVKYHDVHHWDPSVNFGQYTMIWDYVFRSFRAYPGEGG 275
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: L1JK92_GUITC (Fatty acid hydroxylase domain-containing protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JK92_GUITC) HSP 1 Score: 192 bits (489), Expect = 3.770e-54 Identity = 101/232 (43.53%), Postives = 135/232 (58.19%), Query Frame = 3 Query: 426 YPAWLSIILLGFEIMATLVH-VYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPV 1118 Y W +ILLG E+M+ LV+ + R + I RGKHLD D +F+T+N+ T LFTYHA+++ W P R+ WG SE+ + + + AF +L Q APSRGNADAVNVHP EF+ GEY HLLA+ F++P H V A F+V GG LASLNHTR+D+ +P L++ + HD HH P NYGQYTMLWD + G+ P+P+ Sbjct: 4 YALWSVVILLGLELMSYLVNEIPQRFFNPSAIPIRGKHLDVLSWKDISFITWNKFTTTLFTYHALRFCWLSP---RIAWGWSEMTILNTVIAFFSLFVVYDFFYCIWHRILHVRGLYKFIHKHHHHQAAPSRGNADAVNVHPIEFIVGEYCHLLAI-----FIIPCHAVVAAVFVVLGGILASLNHTRYDIAVPLLFDTKAHDQHHVIPTVNYGQYTMLWDRVFGTYVPHPL 227
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Match: A0A7S0GVS8_9EUKA (Hypothetical protein n=2 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GVS8_9EUKA) HSP 1 Score: 193 bits (490), Expect = 7.530e-54 Identity = 102/246 (41.46%), Postives = 140/246 (56.91%), Query Frame = 3 Query: 387 FSLVNSDTWRWWHYPAWLSIILLGFEIMATLVHVYGRASRVATIRSRGKHLDEFEPLDTAFVTFNRCCTALFTYHAIQYLWYGPWGGRVGWGLSELGLASGLGAFVALXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKAPSRGNADAVNVHPFEFVCGEYNHLLALHLVSRFVVPVHVVAAGAFIVAGGFLASLNHTRFDVRIPFLYEVRYHDIHHWYPECNYGQYTMLWDWLMGSLKPYPVEK 1124 F + TW+ WH+ + +I LG EI++ +V + + ++ I RGKHLD FE +D ++ N+ TA+F YH ++Y+ V W + L + + + V + RQ+AP+RGN DA+NVHPFEFV GEY HLLA HLV++++V VH+VA F+V GG LASLNHTRFD +Y V+ HD+HH PE NYGQY MLWD +MGS KPY K Sbjct: 25 FVIHQPGTWQVWHFGVFSVVIYLGMEILSHIVPLVFQ-NKTNLIPMRGKHLDVFETVDHVYININKIATAVFVYHMLKYVN----AANVEWDIGGLSVVNFPVSVVLMHIVYDFFYTIFHRVLHNRQLYRFVHKHHHRQRAPTRGNLDAINVHPFEFVVGEYLHLLAAHLVTKYLVKVHIVAIAWFVVVGGILASLNHTRFDFSFLGIYSVKVHDVHHRLPESNYGQYIMLWDKIMGSYKPYVEPK 265 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17093.1 >prot_C-linearis_contig97.17093.1 ID=prot_C-linearis_contig97.17093.1|Name=mRNA_C-linearis_contig97.17093.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=302bp MSWVLAEGVLADVLLKGAGGAAFSLVNSDTWRWWHYPAWLSIILLGFEIMback to top mRNA from alignment at C-linearis_contig97:351525..353615+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17093.1 ID=mRNA_C-linearis_contig97.17093.1|Name=mRNA_C-linearis_contig97.17093.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2091bp|location=Sequence derived from alignment at C-linearis_contig97:351525..353615+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:351525..353615+ >mRNA_C-linearis_contig97.17093.1 ID=mRNA_C-linearis_contig97.17093.1|Name=mRNA_C-linearis_contig97.17093.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at C-linearis_contig97:351525..353615+ (Chordaria linearis ClinC8C monoicous)back to top |