mRNA_C-linearis_contig97.17092.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A6H5K116_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K116_9PHAE) HSP 1 Score: 396 bits (1017), Expect = 2.260e-126 Identity = 222/284 (78.17%), Postives = 235/284 (82.75%), Query Frame = 3 Query: 1413 GVVGDLPHQVSELYADMERNLMSRMHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLLAAGSAVFFSGRGGG 2264
GVVGDLP+QVSELYA+MERNLMSRMHAQDKNRFRAVGLS++L+LIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVV AGALFLREASAN ETQAALVSLALYVLQHP T A QV VIR P+FR+GA+ELVVALGQSEEVY A VQATLS+VLSASSREVL+DQVVFD SKVFVAQVMGDDAVQRSGGDALW++VQYALQTRLFKATG+CLLAAGSAV SGRGGG
Sbjct: 214 GVVGDLPYQVSELYAEMERNLMSRMHAQDKNRFRAVGLSSLLILIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVRAGALFLREASANSETQAALVSLALYVLQHPDTRAXXXXXXXXXXXXXXXXXXXXXQVTDMALKVIRNPQFRQGASELVVALGQSEEVYGAXXXXXXXXXXXXXVQATLSTVLSASSREVLQDQVVFDHSKVFVAQVMGDDAVQRSGGDALWSSVQYALQTRLFKATGICLLAAGSAVLLSGRGGG 497
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: D7FTZ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTZ2_ECTSI) HSP 1 Score: 237 bits (604), Expect = 1.890e-69 Identity = 133/159 (83.65%), Postives = 145/159 (91.19%), Query Frame = 3 Query: 1641 QVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQV 2117
QVQTQELATALVQALLNDQEVV AGALFLREASANPETQAALVSLALYVLQHP T AET+VLAKKL+++ILDDPD+V QV VIRTP+FR+GA+ELVVALGQS+EVY AV LASRVIQDP+VQATLS+VLSASSREVL+DQVVFD SKVFVAQV
Sbjct: 15 QVQTQELATALVQALLNDQEVVRAGALFLREASANPETQAALVSLALYVLQHPDTRAETKVLAKKLIKAILDDPDTVLQVTDMVLKVIRTPQFRQGASELVVALGQSQEVYGAVVDLASRVIQDPKVQATLSTVLSASSREVLQDQVVFDHSKVFVAQV 173
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A835YV69_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YV69_9STRA) HSP 1 Score: 213 bits (541), Expect = 5.470e-60 Identity = 123/270 (45.56%), Postives = 174/270 (64.44%), Query Frame = 3 Query: 1449 LYADMERNLMSRMHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLLAAGSAVFFSGRG 2258
+Y+DME LM+RM +K RFR + T+L +IWV + FG EIR + QTAEVARETLK EA+Q+QTQELA A+V LLND +V++A ++FL++A+++P+TQAA+VSLA +VLQHP TL E LA+KL+ ++ + + + + T L L + VY A + SR+I +P V+ +S +++ S VL D V K FVA+VMGDD VQ++GGDALW++VQYAL+ RL GL + AG+ F+GRG
Sbjct: 1 MYSDMEAKLMARMRTHNKGRFRTAAIVTVLTVIWVFNTFGKEIRVWMGGQTAEVARETLKHEAIQIQTQELAMAVVNTLLNDPKVLAATSVFLQDAASDPDTQAAIVSLASHVLQHPDTLQEVHALAQKLIAQLVKEAAATLRTCTVLASLKHT--------HLKCIL---DHVYEAFLDMVSRIIAEPRVKEQVSLIMADGSHHVLADADVLQHGKDFVAEVMGDDQVQKTGGDALWHSVQYALRWRLMVVAGLSMACAGA--IFAGRG 257
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A7S3UXV6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UXV6_HETAK) HSP 1 Score: 193 bits (490), Expect = 2.750e-51 Identity = 104/260 (40.00%), Postives = 157/260 (60.38%), Query Frame = 3 Query: 1464 ERNLMSRMHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLLAAGSAVF 2243
E LM R+H ++NRFR L T+L W+ + FG EI +F QTAEVA+ETL+ E+LQ+QTQELATA+VQ LLND +V+ +FL+EA+ N ET+ ALV L L++LQH T+ E L +K+V + +P + + V++ R ++ A++LV L ++E+VY AV L +RV+ +S VL D V SK F+++V D+ +Q++G ALW+TV+Y++Q L + G L+ A+F
Sbjct: 113 EEYLMKRIHIGNQNRFRTAVLGTILTCCWLTATFGQEIYSFFTKQTAEVAKETLRQESLQIQTQELATAIVQTLLNDDQVMKNATIFLKEAAGNEETKKALVGLGLFILQHEETMREAVELGRKIVVQLSKEPSVINNIALLMLEVLKDKRVQESASDLVADLSENEQVYEAVVQLTNRVLSXXXXXXXXXXXXXEASISVLSDDTVISHSKEFISEVANDEEIQKAGSKALWHTVKYSVQPHLKRIVGAALVGTSIALF 372
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A7R9YAX6_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAX6_9STRA) HSP 1 Score: 158 bits (400), Expect = 1.780e-39 Identity = 99/262 (37.79%), Postives = 152/262 (58.02%), Query Frame = 3 Query: 1425 DLPHQVSELYADMERNLMSRMHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATG 2210
++ +V + Y ++E LM A + + R + L+ +WV S+FG IRR+F+ QTAEVARETL+ E LQ +TQELA A+V+ +LND++++ F+R + + + ALV LAL++LQH TLAE +VL KLV IL D + P R +L+V L Q++EV AV AL + V +P ++ L +L A++ V+ D+ V +K FV +V+ D VQR+GG +L +V Y+L+ L + G
Sbjct: 43 EVSQRVVDNYKEIEARLMRTTRASNVEQIRLALTAAALVTVWVFSVFGRHIRRFFSKQTAEVARETLENEELQARTQELAAAVVRTILNDEDILVKITAFIRNTADDDNLRDALVQLALHILQHDDTLAEVKVLGLKLVDYILKDETVTIEAGALVQRTWNLPEVRTATLDLLVDLLQTQEVNQAVLALLTSVADEPVFKSKLQELLIAATHGVVIDKGVHTAAKDFVHEVVTDTDVQRTGGRSLRASVWYSLEPVLARVAG 304
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A7S2GHN5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GHN5_9STRA) HSP 1 Score: 130 bits (327), Expect = 2.740e-29 Identity = 80/220 (36.36%), Postives = 126/220 (57.27%), Query Frame = 3 Query: 1560 MFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCL 2219
MF I +F +TAEVAR+ LK E LQ QT ELA A VQ++L D EV + FLRE +++ ET+ A+V L++ VL+ P L + L K++ +++ DPD++ ++ + + + EL+ L Q E V +V AL R+ + ++Q L+ ++ SS VL D + S+ FV++V+ D VQR+GG ALW +V Y+++ K G L
Sbjct: 130 MFSDTILSFFGRETAEVARQVLKNEGLQDQTLELANAAVQSVLRDPEVRARALAFLRETASSEETRRAMVRLSVQVLKDPLVLEDAAALGKEVWLNLIRDPDTMDELVSVLKQALLHAQTQTAVIELIGRLCQDETVQGSVQALFHRLFLEADIQEALNEMMINSSHAVLDDASIARESRRFVSEVVSDAEVQRTGGQALWQSVVYSVEPTTRKVLGFAL 349
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A485KNS4_9STRA (Aste57867_9680 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNS4_9STRA) HSP 1 Score: 127 bits (319), Expect = 2.710e-28 Identity = 83/231 (35.93%), Postives = 128/231 (55.41%), Query Frame = 3 Query: 1485 MHAQDKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQY 2177
M+ Q KN + GL + + ++ + FG E+R TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+ FL++ A T ALV L VL P TLA LAK+L+ ++ DP +++Q I P R+ L+ L Q E A +T L + +VQ ++++ ++ S +V+ +Q V D +K F+ V+ D+ VQ G+ALW T+ Y
Sbjct: 84 MNMQGKN-WNMWGLGIIGVGVFXMIAFGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQACHFLKKLFAMEMTHVALVQLTSGVLNDPQTLAHVTKLAKQLLFNLFQDPTTLRQFVDLIKTAIVDPNTRESVIALLDQLMQDEATRARLTKLMAWTFVQDQVQGSVTTTITKSVHQVMSNQDVQDHAKEFIGGVVRDETVQTQSGEALWKTLLY 313
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A7S3HRC0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRC0_9STRA) HSP 1 Score: 115 bits (289), Expect = 7.010e-26 Identity = 65/183 (35.52%), Postives = 110/183 (60.11%), Query Frame = 3 Query: 1674 VQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTRLFKATGLCLL 2222
VQ +L D+++ + A FL+EAS PETQ AL+ L +++LQH TL E +++KL XXX V++ P R L+ L Q +EV+ +V+ L ++ +P+V + S++L+ S +++ D + +S+ F+A V+GDD +Q+ GG ALWN++QYAL+ + + TG+ L+
Sbjct: 1 VQTILEDKDITNHAATFLKEASTAPETQQALLKLTMHILQHKDTLEELTKMSQKLXXXXXXXXXXXXXXXXXFTKVLQDPALRTAMVTLIGDLCQDKEVFESVSGLVVQLAGEPKVTESTSALLTGSISDLMHDDEISHQSRQFIADVVGDDLLQKEGGYALWNSIQYALKPGIIRVTGVTLV 183
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A024UV14_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UV14_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.410e-25 Identity = 75/221 (33.94%), Postives = 121/221 (54.75%), Query Frame = 3 Query: 1521 GLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYAL 2183
GL + + + FG E+R TAEVA ETL+ E+LQ+QTQELA+ +VQ +LND +V+ + FL++ A T+ A+V L TLA L+K+++ ++ DP +++Q I P R+ L+ L + E A +TAL + P VQ ++S+ +++S V+ ++ V D +K F+ V+ D+ VQ G+ALW T+ Y L
Sbjct: 82 GLGLLGVXXXXVIAFGPEMRSKMTKTTAEVATETLQNESLQIQTQELASQIVQTVLNDPKVLDQASQFLQKLMAMDATRGAMVQLXXXXXXXXXTLAHVTKLSKQILFNLFQDPATLRQFVDLIKAAIVDPHTRQNVILLLDQLMKDEPTRARLTALLAWTFVQPPVQHSVSATMTSSVHNVMSNKDVQDHAKEFIGGVVRDETVQTQSGEALWKTLMYVL 302
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Match: A0A1V9YHQ0_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YHQ0_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.900e-24 Identity = 81/241 (33.61%), Postives = 131/241 (54.36%), Query Frame = 3 Query: 1473 LMSRMHAQ-DKNRFRAVGLSTMLLLIWVLSMFGTEIRRYFASQTAEVARETLKVEALQVQTQELATALVQALLNDQEVVSAGALFLREASANPETQAALVSLALYVLQHPGTLAETRVLAKKLVRSILDDPDSVQQVXXXXXXVIRTPRFRKGATELVVALGQSEEVYAAVTALASRVIQDPEVQATLSSVLSASSREVLRDQVVFDRSKVFVAQVMGDDAVQRSGGDALWNTVQYALQTR 2192
L+SR A +K + A+GL + L+ F E++ + TAEVA ETL+ E LQ+QTQELA+ +VQ +LND +V++ F++ S + TQ ALV+L VL +P T+A+ L+K+L+ ++L DP +++Q XXXX E A + L S V+ ++++ L+ S +V+ + + D +KVF+ V+ D+ VQ G+A+WNT+ Y R
Sbjct: 7 LLSRHKASWNKWGYVALGLGGLCLIA-----FAPELKNSMSKTTAEVASETLQNENLQIQTQELASQIVQTVLNDPKVLNQALQFIKNLSESEITQTALVNLTSNVLNNPQTMAQVTKLSKQLLLNLLQDPTTLRQFVNXXXXXXXXXXXXXXXXXXXXXXXXXENTKARLAHLMSHTFVQEPVKKSVTNTLTNSLHDVMSNPDIQDHAKVFIGGVVRDETVQTQSGEAIWNTMSYVFTPR 242 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17092.1 >prot_C-linearis_contig97.17092.1 ID=prot_C-linearis_contig97.17092.1|Name=mRNA_C-linearis_contig97.17092.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=507bp MFRGRLISSRPPCCRHGHGHGHGSLGARERLRLLLLSKKPRGSPMPRQRQback to top mRNA from alignment at C-linearis_contig97:345615..351185- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17092.1 ID=mRNA_C-linearis_contig97.17092.1|Name=mRNA_C-linearis_contig97.17092.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=5571bp|location=Sequence derived from alignment at C-linearis_contig97:345615..351185- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:345615..351185- >mRNA_C-linearis_contig97.17092.1 ID=mRNA_C-linearis_contig97.17092.1|Name=mRNA_C-linearis_contig97.17092.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3042bp|location=Sequence derived from alignment at C-linearis_contig97:345615..351185- (Chordaria linearis ClinC8C monoicous)back to top |