mRNA_C-linearis_contig97.17087.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17087.1
Unique NamemRNA_C-linearis_contig97.17087.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K7W0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 8.370e-26
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct:    3 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 54
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5KZG0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG0_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.600e-25
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct:    3 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 54
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5J6Q0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q0_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 4.980e-24
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R+NCNN RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct:   18 QEWKDAIIKVLYKKGDRSNCNNCRGISLLSHVGKVLAKTITNRLSAFCEANE 69
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5JFS8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS8_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.300e-23
Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R NCNNFRGISLLSHVGK+LAKTITNRLSA+CEAN+
Sbjct:   99 QEWKDAIIKVLYKKGDRPNCNNFRGISLLSHVGKILAKTITNRLSAFCEANE 150
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 7.330e-23
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct:   46 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 97
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K963_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K963_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.250e-22
Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEA 343
            QEWKDAII VLYKKG+R NCNNFRGISLLSHVGK+LAKTITNRLSA+CEA
Sbjct:  238 QEWKDAIIKVLYKKGDRTNCNNFRGISLLSHVGKILAKTITNRLSAFCEA 287
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K615_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K615_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 1.300e-22
Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R NCNNFR ISLLSHVGK+LAKTITNRLS +CEAN+
Sbjct:   84 QEWKDAIIKVLYKKGDRTNCNNFRDISLLSHVGKILAKTITNRLSTFCEANE 135
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.370e-22
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct:   73 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 124
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.430e-22
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct:  241 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 292
[Close]
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.460e-22
Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 
Query:  194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
            QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct:  570 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 621
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K7W0_9PHAE8.370e-2688.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KZG0_9PHAE2.600e-2588.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5J6Q0_9PHAE4.980e-2488.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JFS8_9PHAE1.300e-2388.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5K7X5_9PHAE7.330e-2388.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K963_9PHAE1.250e-2290.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K615_9PHAE1.300e-2284.62Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KA81_9PHAE1.370e-2288.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE1.430e-2288.46Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE1.460e-2288.46Reverse transcriptase domain-containing protein n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:304654..305005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size352
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930828.4297507-CDS-C-linearis_contig97:304653..3050041622930828.4297507-CDS-C-linearis_contig97:304653..305004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 304654..305004 +
1690881270.8333342-CDS-C-linearis_contig97:304653..3050041690881270.8333342-CDS-C-linearis_contig97:304653..305004Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 304654..305004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17087.1prot_C-linearis_contig97.17087.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 304654..305004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17087.1

>prot_C-linearis_contig97.17087.1 ID=prot_C-linearis_contig97.17087.1|Name=mRNA_C-linearis_contig97.17087.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=117bp
VLALLRVLGPGGENNTFPVALRYIFVSDYFWVSLQNRGSKRGGAIRGFQG
STRKNQRSTIHIPEAGVEGRNHQCAVQEGGAGQLQQLQGHLVAVARRQGP
RQDYHQPPECILRSQRH
back to top

mRNA from alignment at C-linearis_contig97:304654..305005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17087.1 ID=mRNA_C-linearis_contig97.17087.1|Name=mRNA_C-linearis_contig97.17087.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=352bp|location=Sequence derived from alignment at C-linearis_contig97:304654..305005+ (Chordaria linearis ClinC8C monoicous)
GTGCTGGCTCTGCTCAGAGTGCTTGGTCCAGGAGGGGAAAATAACACGTT
TCCCGTGGCCCTGCGATATATCTTTGTTTCGGACTATTTCTGGGTCTCAC
TGCAGAATCGTGGCAGCAAGCGCGGCGGAGCGATACGAGGTTTTCAAGGT
TCAACACGAAAGAACCAAAGATCTACAATACACATTCCAGAGGCAGGAGT
GGAAGGACGCAATCATCAATGTGCTGTACAAGAAGGGGGAGCGGGCCAAC
TGCAACAACTTCAGGGGCATCTCGTTGCTGTCGCACGTAGGCAAGGTCCT
CGCCAAGACTATCACCAACCGCCTGAGTGCATACTGCGAAGCCAACGACA
TC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig97:304654..305005+

>mRNA_C-linearis_contig97.17087.1 ID=mRNA_C-linearis_contig97.17087.1|Name=mRNA_C-linearis_contig97.17087.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at C-linearis_contig97:304654..305005+ (Chordaria linearis ClinC8C monoicous)
GTGCTGGCTCTGCTCAGAGTGCTTGGTCCAGGAGGGGAAAATAACACGTT
TCCCGTGGCCCTGCGATATATCTTTGTTTCGGACTATTTCTGGGTCTCAC
TGCAGAATCGTGGCAGCAAGCGCGGCGGAGCGATACGAGGTTTTCAAGGT
TCAACACGAAAGAACCAAAGATCTACAATACACATTCCAGAGGCAGGAGT
GGAAGGACGCAATCATCAATGTGCTGTACAAGAAGGGGGAGCGGGCCAAC
TGCAACAACTTCAGGGGCATCTCGTTGCTGTCGCACGTAGGCAAGGTCCT
CGCCAAGACTATCACCAACCGCCTGAGTGCATACTGCGAAGCCAACGACA
TGTGCTGGCTCTGCTCAGAGTGCTTGGTCCAGGAGGGGAAAATAACACGT
TTCCCGTGGCCCTGCGATATATCTTTGTTTCGGACTATTTCTGGGTCTCA
CTGCAGAATCGTGGCAGCAAGCGCGGCGGAGCGATACGAGGTTTTCAAGG
TTCAACACGAAAGAACCAAAGATCTACAATACACATTCCAGAGGCAGGAG
TGGAAGGACGCAATCATCAATGTGCTGTACAAGAAGGGGGAGCGGGCCAA
CTGCAACAACTTCAGGGGCATCTCGTTGCTGTCGCACGTAGGCAAGGTCC
TCGCCAAGACTATCACCAACCGCCTGAGTGCATACTGCGAAGCCAACGAC
AT
back to top