mRNA_C-linearis_contig97.17087.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K7W0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7W0_9PHAE) HSP 1 Score: 101 bits (251), Expect = 8.370e-26 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct: 3 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 54
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5KZG0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZG0_9PHAE) HSP 1 Score: 101 bits (251), Expect = 2.600e-25 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct: 3 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 54
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5J6Q0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q0_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 4.980e-24 Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R+NCNN RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct: 18 QEWKDAIIKVLYKKGDRSNCNNCRGISLLSHVGKVLAKTITNRLSAFCEANE 69
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5JFS8_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFS8_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.300e-23 Identity = 46/52 (88.46%), Postives = 50/52 (96.15%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R NCNNFRGISLLSHVGK+LAKTITNRLSA+CEAN+
Sbjct: 99 QEWKDAIIKVLYKKGDRPNCNNFRGISLLSHVGKILAKTITNRLSAFCEANE 150
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K7X5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7X5_9PHAE) HSP 1 Score: 101 bits (251), Expect = 7.330e-23 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct: 46 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 97
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K963_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K963_9PHAE) HSP 1 Score: 98.6 bits (244), Expect = 1.250e-22 Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEA 343
QEWKDAII VLYKKG+R NCNNFRGISLLSHVGK+LAKTITNRLSA+CEA
Sbjct: 238 QEWKDAIIKVLYKKGDRTNCNNFRGISLLSHVGKILAKTITNRLSAFCEA 287
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K615_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K615_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 1.300e-22 Identity = 44/52 (84.62%), Postives = 48/52 (92.31%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R NCNNFR ISLLSHVGK+LAKTITNRLS +CEAN+
Sbjct: 84 QEWKDAIIKVLYKKGDRTNCNNFRDISLLSHVGKILAKTITNRLSTFCEANE 135
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.370e-22 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct: 73 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 124
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.430e-22 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct: 241 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 292
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.460e-22 Identity = 46/52 (88.46%), Postives = 51/52 (98.08%), Query Frame = 2 Query: 194 QEWKDAIINVLYKKGERANCNNFRGISLLSHVGKVLAKTITNRLSAYCEAND 349
QEWKDAII VLYKKG+R+NCNN+RGISLLSHVGKVLAKTITNRLSA+CEAN+
Sbjct: 570 QEWKDAIIKVLYKKGDRSNCNNYRGISLLSHVGKVLAKTITNRLSAFCEANE 621 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17087.1 >prot_C-linearis_contig97.17087.1 ID=prot_C-linearis_contig97.17087.1|Name=mRNA_C-linearis_contig97.17087.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=117bp VLALLRVLGPGGENNTFPVALRYIFVSDYFWVSLQNRGSKRGGAIRGFQGback to top mRNA from alignment at C-linearis_contig97:304654..305005+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17087.1 ID=mRNA_C-linearis_contig97.17087.1|Name=mRNA_C-linearis_contig97.17087.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=352bp|location=Sequence derived from alignment at C-linearis_contig97:304654..305005+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:304654..305005+ >mRNA_C-linearis_contig97.17087.1 ID=mRNA_C-linearis_contig97.17087.1|Name=mRNA_C-linearis_contig97.17087.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at C-linearis_contig97:304654..305005+ (Chordaria linearis ClinC8C monoicous)back to top |