mRNA_C-linearis_contig97.17085.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17085.1
Unique NamemRNA_C-linearis_contig97.17085.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A6H5L9L6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9L6_9PHAE)

HSP 1 Score: 619 bits (1595), Expect = 6.720e-211
Identity = 355/607 (58.48%), Postives = 423/607 (69.69%), Query Frame = 1 
Query:    4 STRMGTSSMSDERHEQWKHIYRDFILQVHPDFFQDSPKERAVNEKSLKTFSQHLERL--QLGQHGXXXXXXNSSTGGDSSLVFFVKQAGRSTHDKEADDSIKPRHEHNSDGDVDGGGPSPKKFLLPLENHHLMAAHLLEAGITSVLLLPTEPPRRQADHASAHNH--SRPAGDTYS---SGWHSWGDDVFGGTAANRAWDEAAAXXXXXXXXXXXXRARGRSAFSSVQDNTREGRQRTTQWGAAFERANGDGDESTSRLGRVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAHQGTLNVPNFGGLEVVFRNDPSALDKEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAE---EGGVDMGNGHEAGTYVSLGDWSGLHCKVEEGFSRVSKVLEDGTIQVGSEMTLESLRRCLHRDLASSSAAAAKSLHLADAAAAKARSCGRSLCLEAVDRAPHAVSLPQMITACEALVKFGERADSGS---LGAEAVAARRRLRGQCVRIVGSRVGVCDGVNEDGEILVAWNWAEE--GEEQGSS 1779
            ST  G ++ S E+H++WK +YR F+L VHPDFF +SPK+RAVNEKSLK+ SQHL+RL  +  + G      N++ G  S LVFF+KQAG    D+ A             G    G PS  K +LPL +HH MA HL ++G++ V      PP   A+ AS   H  SRP   + +   S WH W DD+FGGTAANRAWDEAAA               GRSAFSS  D TREGRQRTT+WGAAFER +G      S LG++L++D GRALVRERR+SSRKVR+LV ELREQYGFGEFTFRCGWSKSNLCVALGSL+ETC A +G   V +FGGLEVVFRNDPS L K EIRLCP+DVPNQW+  L+RVTP VLS A E SR+M+SLQERAS AL+GA++SRGLSC K RYR+FL ++CA    E     G G +A   +  GDWS L C+VEEGF R S VLEDGTIQVGS+MTL++LRRCL RD  SSSAA A+ L LA AAAA A  C ++L LE++ R+ H V   +M+ ACEALV+F ERA SG       EAVAARRRLRG CVR+VGSRVGVCDGV EDGEI++ WNW EE  GEE+ SS
Sbjct:   43 STHSGRTT-SPEQHQEWKSVYRAFLLHVHPDFFHESPKKRAVNEKSLKSLSQHLDRLGGEDTRSGGVHSRSNAANGSASPLVFFLKQAG----DEGA-------------GSKSDGSPSRGKVMLPLGSHHQMATHLYDSGMSGV-----SPPPAHAEQASTRRHHSSRPVDSSNNDNPSRWHGWEDDLFGGTAANRAWDEAAAGRNGSRD------THGRSAFSSDDDKTREGRQRTTEWGAAFERRSGH----ASWLGQILSTDEGRALVRERRSSSRKVRRLVGELREQYGFGEFTFRCGWSKSNLCVALGSLVETCRARRGEFLVNDFGGLEVVFRNDPSVLHKGEIRLCPSDVPNQWVSALRRVTPAVLSAAEEQSREMISLQERASRALRGARLSRGLSCSKSRYRDFLSKVCAAADAEPDEGDGGGGDAAADLVKGDWSDLMCRVEEGFRRASTVLEDGTIQVGSDMTLKTLRRCLGRDSDSSSAATAEYLELAVAAAATAERCRQALGLESIKRSRHTVGNSEMVMACEALVRFSERAKSGGDLRAEKEAVAARRRLRGHCVRVVGSRVGVCDGVTEDGEIVLPWNWWEEEDGEERRSS 616
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BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A662YBB6_9STRA (DUF4461 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YBB6_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 8.030e-12
Identity = 91/346 (26.30%), Postives = 151/346 (43.64%), Query Frame = 1 
Query:  769 LASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWS----KSNLCVALGSLLETCHAH-QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNGHEAGTYVSLGDWSGLHCKVEEGFSRVSKVLEDGTIQVGSEMTLESLRRCLHRD---LASSSAAAAKSLHLADAAAAKARSCGRSLCLEAVDRAPHAVSLPQMITACEALVKFGERADSGSLGAEAVAARRRLRGQCVRIVGSRV---GVCD----GVNEDGEILVAWNW 1749
            + +D   A  ++R+ + + ++ +   L+ + G  +    CGWS     +++ V L  L +   AH QG     +F  G  +   ++PS +D   +  I L PADVP QW+ VL+ +  D++     +   + +LQ  A++AL  A I+RG +C    YR FL  + +         GH        G    L   VE+G S    VLE G +Q  S+ + E +   L ++   + S  AA A +L   +A A  +  C  +L   ++      + L   I ACE L+K          G     AR  L  + VR V +      +C     G+ +DG   +  +W
Sbjct:  250 MRADDTMATQKQRQIAWQSIQSVKRTLKRELGVEDVLTSCGWSTMHLNTSIMVLLHILRQYTRAHKQGIFTPKDFLRGATIDISSNPSGIDFANEYRIGLNPADVPLQWVEVLETIDADMVVFMKAARESLEALQSNATAALGEAHITRGFTCSALGYRAFLQSMRSHNASFAADYGHS-----EQGLLEKLSLVVEDG-SYDWMVLETGHVQAPSDSSYEDVTEFLRKNRPRIRSQQAAHAANL---EAFAFISSRCAHTLGATSIT-CGDGIPLADAIVACEELLK-------AVAGLSPQGARNALPNEMVRFVDTYTQGRAICISRSFGLGQDGVFTLPVDW 578
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BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A662X3P7_9STRA (DUF4461 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3P7_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.520e-10
Identity = 60/230 (26.09%), Postives = 106/230 (46.09%), Query Frame = 1 
Query:  769 LASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWS----KSNLCVALGSLLETCHAH-QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNGHEAGTYVSLGDWSGLHCKVEEGFSRVSKVLEDGTIQVGSEMTLESLRRCLHRD 1431
            + +D   A  ++R+ + + ++ +   L+ + G  +    CGWS     +++ V L  L +   AH QG     +F  G  +   ++PS +D   +  I L PADVP QW+ VL+ +  D++     +   +  LQ  A++AL  A I+RG +C    YR FL  + +         GH     +       L   +E+G S    +LE G +Q  S+ + E +   L ++
Sbjct:  254 MRADDTMATQKQRQIAWQSIQSVKRTLKRELGIEDVLTSCGWSTMHLNTSIMVLLHILRQYTRAHKQGIFTPKDFLRGATIDISSNPSGIDFANEYRIGLNPADVPLQWVEVLETIDADMVVFMKAARESLEVLQSNATAALGEAHITRGFTCSALGYRTFLQSMRSHNSSSAADYGHNRQGLLEK-----LALVIEDG-SYDWMILETGHVQAPSDSSFEDVTEFLRKN 477
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BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: W2RD74_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RD74_PHYPN)

HSP 1 Score: 72.0 bits (175), Expect = 2.410e-9
Identity = 102/425 (24.00%), Postives = 168/425 (39.53%), Query Frame = 1 
Query:   67 RDFILQVHPDFFQDSPKERAVNEKSLKTFSQHLERLQLGQHGXXXXXXNSSTGGDSSLVFFVKQAGRSTHDKEADDSIKPRHEHNSDGDVDGGGPSPKKFLLPLENHHLMAAHLLEAGITSVLL---LPTEPPRRQA---DHASAHNHSRPAGD--------TYSSGWHSWGDDVFGGTAANRAWDEAAAXXXXXXXXXXXXRARGRSAFSSVQDNTREGRQRTTQWGAAFERANGDGDESTSRLGRVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNG 1272
            + F+L+VHPD F++ PK    N  S+K  +Q ++      HG                V+F      S   +E+ + IK                + K+F  PLE    +AA++ EA + SVL    +  +    +A     AS H   +  G+        ++ SGW S     FGG   +  + +A                  R+A +S     ++  Q                  +   L   +  D    + + RR + + ++ +   L+ + G  +  F CGWS  +L      LL+T   +     QG     +F  G  +    +PS +D   +  I L PADVP QW+ VL+ +  +++     +   + SLQ  A++AL  A ISRG +C    YR FL R+   +   D   G
Sbjct:    9 KQFLLRVHPDHFRNIPKVHDENLHSVKLLNQFMDE-HYASHGGGGSLSWRRLAAPKEKVYFSVMVP-SLKAQESGEEIK----------------TLKRF--PLE----LAANI-EAKMISVLRECGVSVDQNTEEAAVSGTASQHRRVKKRGERRPDDWRRSHESGWKSPSGMDFGGFTMDEMYAKA-----------------NRAAAASASRRRKKPIQ------------------TLKGLLEYMKEDETVEIQQRRRIAWQSIQSVRGTLKRELGLEDVLFSCGWSTMHLNTTAMILLQTLRKYTRANKQGIFTPKDFLHGATIDISANPSGIDFSNEYRIVLNPADVPVQWIQVLETIDANMVLFMKAARESLKSLQTDATAALGEANISRGHTCSAIGYRAFLQRMRQRDAAYDSEQG 373
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BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A0W8C9T8_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C9T8_PHYNI)

HSP 1 Score: 72.0 bits (175), Expect = 3.490e-9
Identity = 102/425 (24.00%), Postives = 168/425 (39.53%), Query Frame = 1 
Query:   67 RDFILQVHPDFFQDSPKERAVNEKSLKTFSQHLERLQLGQHGXXXXXXNSSTGGDSSLVFFVKQAGRSTHDKEADDSIKPRHEHNSDGDVDGGGPSPKKFLLPLENHHLMAAHLLEAGITSVLL---LPTEPPRRQA---DHASAHNHSRPAGD--------TYSSGWHSWGDDVFGGTAANRAWDEAAAXXXXXXXXXXXXRARGRSAFSSVQDNTREGRQRTTQWGAAFERANGDGDESTSRLGRVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNG 1272
            + F+L+VHPD F++ PK    N  S+K  +Q ++      HG                V+F      S   +E+ + IK                + K+F  PLE    +AA++ EA + SVL    +  +    +A     AS H   +  G+        ++ SGW S     FGG   +  + +A                  R+A +S     ++  Q                  +   L   +  D    + + RR + + ++ +   L+ + G  +  F CGWS  +L      LL+T   +     QG     +F  G  +    +PS +D   +  I L PADVP QW+ VL+ +  +++     +   + SLQ  A++AL  A ISRG +C    YR FL R+   +   D   G
Sbjct:    9 KQFLLRVHPDHFRNIPKVHDENLHSVKLLNQFMDE-HYASHGGGGSLSWRRLAAPKEKVYFSVMVP-SLKAQESGEEIK----------------TLKRF--PLE----LAANI-EAKMISVLRECGVSVDQNTEEAAVSGTASQHRRVKKRGERRPDDWRRSHESGWKSPSGMDFGGFTMDEMYAKA-----------------NRAAAASASRRRKKPIQ------------------TLKGLLEYMKEDETVEIQQRRRIAWQSIQSVRGTLKRELGLEDVLFSCGWSTMHLNTTAMILLQTLRKYTRANKQGIFTPKDFLHGATIDISANPSGIDFSNEYRIVLNPADVPVQWIQVLETIDANMVLFMKAARESLKSLQTDATAALGEANISRGHTCSALGYRAFLQRMRQRDAAYDSEQG 373
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BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A6A3KLI4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KLI4_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 5.500e-9
Identity = 49/159 (30.82%), Postives = 76/159 (47.80%), Query Frame = 1 
Query:  805 RRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGG 1254
            RR +   ++ +   L+ + G  +  F CGWS  +L      LL+T   +     QG     +F  G  +    +PS +D   +  I L PADVP QW+ VL+ +  D++     +   + +LQ  A+SAL  A ISRG +C    YR FL  +   + G
Sbjct:  203 RRIAWESIQSVRNTLKRELGLEDVLFSCGWSTMHLNTTAMILLQTLRKYTRMNKQGIFTPKDFLRGATIDLSANPSGIDFSNEYRIGLNPADVPVQWVQVLETIDADMVVFMKATRESLATLQADATSALGEANISRGHTCSALGYRTFLQSMRRRDAG 361
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BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A6A3SEK8_9STRA (DUF4461 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3SEK8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 6.050e-9
Identity = 49/159 (30.82%), Postives = 75/159 (47.17%), Query Frame = 1 
Query:  805 RRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALDKEE---IRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGG 1254
            RR +   ++ +   L+ + G  +  F CGWS  +L      LL+T   +     QG     +F  G  +    +PS +D      I L PADVP QW+ VL+ +  D++     +   + +LQ  A+SAL  A ISRG +C    YR FL  +   + G
Sbjct:  155 RRIAWESIQSVRNTLKRELGLEDVLFSCGWSTMHLNTTAMILLQTLRKYTRANKQGIFTPKDFLRGATIDLSANPSGIDFSNAYRIGLNPADVPVQWVQVLETIDADMVVFMKATRESLATLQADATSALGEANISRGHTCSALGYRTFLQSMRRRDAG 313
[Close]
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A329SB38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SB38_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.370e-9
Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 1 
Query:  805 RRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNG 1272
            RR + + ++ +   L+ + G  +  + CGWS  +L      LL+T   +     QG  +  +F  G  +    +PS +D   +  I L PADVP QW+ VL+ +  +++     +   ++SLQ  A++AL  A ISRG +C    YR FL  +   +   D  +G
Sbjct:  210 RRIAWQSIQSVRGTLKRELGLEDMLYSCGWSTMHLNTTAMILLQTLRKYARANKQGIFSPKDFLRGATIDISANPSGIDFSNEYRIELNPADVPVQWVQVLETIDANMVLFMKAARESLISLQTDATAALGEANISRGHTCSALGYRTFLQSMEQRDAAYDNESG 374
[Close]
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A2P4X8H3_9STRA (Mitochondrial protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8H3_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 1.210e-8
Identity = 49/171 (28.65%), Postives = 82/171 (47.95%), Query Frame = 1 
Query:  742 ESTSRLGRVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFL 1227
            +S   L   +  D    + + R+ + + ++ +   L+ + G  +  F CGWS  +L   +  LL+T   +     QG     +F  G  +    +PS +D   +  I L PADVP QW+ VL+ +  +++     +   + SLQ  A++AL  A ISRG +C    YR FL
Sbjct:  162 QSLKELLEFMKEDETMEIQKRRQIAWQSIQSVRGTLKRELGLEDVLFSCGWSTMHLNTTIMILLQTLRKYTRANKQGIFAPKDFLRGATIDISANPSGIDFSNEYRIGLNPADVPVQWVQVLETIDANMVLFMKAARESLASLQTDATAALGHANISRGHTCSALGYRTFL 332
[Close]
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: G4Z057_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z057_PHYSP)

HSP 1 Score: 63.5 bits (153), Expect = 9.620e-7
Identity = 43/143 (30.07%), Postives = 69/143 (48.25%), Query Frame = 1 
Query:  826 VRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFL 1227
            ++     L+ +    +  F CGWS  +L   +  LL+T   +     QG     +F  G  +    +PS +D   +  I L PADVP QW+ VL+ +  +++     +   + +LQ  A++AL  A ISRG +C    YR FL
Sbjct:  158 IQSAKNTLKRELDLQDVLFSCGWSTMHLNTTVMILLQTLRKYSRANKQGIFTPKDFLRGATIDLSANPSGIDLSNEYRIVLNPADVPVQWVQVLETIDANMVVFMKAAQESLATLQADATAALGEANISRGHTCSALGYRTFL 300
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5L9L6_9PHAE6.720e-21158.48Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662YBB6_9STRA8.030e-1226.30DUF4461 domain-containing protein n=1 Tax=Nothophy... [more]
A0A662X3P7_9STRA7.520e-1026.09DUF4461 domain-containing protein n=1 Tax=Nothophy... [more]
W2RD74_PHYPN2.410e-924.00Uncharacterized protein n=7 Tax=Phytophthora paras... [more]
A0A0W8C9T8_PHYNI3.490e-924.00Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A6A3KLI4_9STRA5.500e-930.82Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A6A3SEK8_9STRA6.050e-930.82DUF4461 domain-containing protein n=2 Tax=Phytopht... [more]
A0A329SB38_9STRA7.370e-929.09Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2P4X8H3_9STRA1.210e-828.65Mitochondrial protein n=1 Tax=Phytophthora palmivo... [more]
G4Z057_PHYSP9.620e-730.07Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:289311..293852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue4.3e-11
Seed eggNOG ortholog4792.ETI50058
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4461)
EggNOG OGs2C7FW@1,2RB0U@2759,3QARN@4776
Ec32 ortholog descriptionDomain of unknown function DUF4461
Ec32 orthologEc-11_003310.1
COG Functional cat.S
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons5
Model size2453
Cds size1797
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.5978386-UTR-C-linearis_contig97:289310..2893221622930832.5978386-UTR-C-linearis_contig97:289310..289322Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 289311..289322 +
1690881272.841226-UTR-C-linearis_contig97:289310..2893221690881272.841226-UTR-C-linearis_contig97:289310..289322Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 289311..289322 +
1622930832.7008975-UTR-C-linearis_contig97:293208..2938521622930832.7008975-UTR-C-linearis_contig97:293208..293852Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 293209..293852 +
1690881272.9115603-UTR-C-linearis_contig97:293208..2938521690881272.9115603-UTR-C-linearis_contig97:293208..293852Chordaria linearis ClinC8C monoicousUTRC-linearis_contig97 293209..293852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.6230328-CDS-C-linearis_contig97:289322..2901941622930832.6230328-CDS-C-linearis_contig97:289322..290194Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 289323..290194 +
1690881272.8513973-CDS-C-linearis_contig97:289322..2901941690881272.8513973-CDS-C-linearis_contig97:289322..290194Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 289323..290194 +
1622930832.6423898-CDS-C-linearis_contig97:290764..2909071622930832.6423898-CDS-C-linearis_contig97:290764..290907Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 290765..290907 +
1690881272.8642414-CDS-C-linearis_contig97:290764..2909071690881272.8642414-CDS-C-linearis_contig97:290764..290907Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 290765..290907 +
1622930832.6598048-CDS-C-linearis_contig97:291451..2916351622930832.6598048-CDS-C-linearis_contig97:291451..291635Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 291452..291635 +
1690881272.8754337-CDS-C-linearis_contig97:291451..2916351690881272.8754337-CDS-C-linearis_contig97:291451..291635Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 291452..291635 +
1622930832.6759524-CDS-C-linearis_contig97:292233..2924021622930832.6759524-CDS-C-linearis_contig97:292233..292402Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 292234..292402 +
1690881272.8854752-CDS-C-linearis_contig97:292233..2924021690881272.8854752-CDS-C-linearis_contig97:292233..292402Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 292234..292402 +
1622930832.6882093-CDS-C-linearis_contig97:292779..2932081622930832.6882093-CDS-C-linearis_contig97:292779..293208Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 292780..293208 +
1690881272.898459-CDS-C-linearis_contig97:292779..2932081690881272.898459-CDS-C-linearis_contig97:292779..293208Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 292780..293208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17085.1prot_C-linearis_contig97.17085.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 289323..293208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17085.1

>prot_C-linearis_contig97.17085.1 ID=prot_C-linearis_contig97.17085.1|Name=mRNA_C-linearis_contig97.17085.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=599bp
MGTSSMSDERHEQWKHIYRDFILQVHPDFFQDSPKERAVNEKSLKTFSQH
LERLQLGQHGHGHGHANSSTGGDSSLVFFVKQAGRSTHDKEADDSIKPRH
EHNSDGDVDGGGPSPKKFLLPLENHHLMAAHLLEAGITSVLLLPTEPPRR
QADHASAHNHSRPAGDTYSSGWHSWGDDVFGGTAANRAWDEAAAAAAAAA
AAGSGGRARGRSAFSSVQDNTREGRQRTTQWGAAFERANGDGDESTSRLG
RVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLC
VALGSLLETCHAHQGTLNVPNFGGLEVVFRNDPSALDKEEIRLCPADVPN
QWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPR
YREFLGRLCAEEGGVDMGNGHEAGTYVSLGDWSGLHCKVEEGFSRVSKVL
EDGTIQVGSEMTLESLRRCLHRDLASSSAAAAKSLHLADAAAAKARSCGR
SLCLEAVDRAPHAVSLPQMITACEALVKFGERADSGSLGAEAVAARRRLR
GQCVRIVGSRVGVCDGVNEDGEILVAWNWAEEGEEQGSSGLRSSSPFY*
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mRNA from alignment at C-linearis_contig97:289311..293852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17085.1 ID=mRNA_C-linearis_contig97.17085.1|Name=mRNA_C-linearis_contig97.17085.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4542bp|location=Sequence derived from alignment at C-linearis_contig97:289311..293852+ (Chordaria linearis ClinC8C monoicous)
AGCAGCACGCGGATGGGCACCAGCAGCATGAGCGACGAACGGCATGAGCA
GTGGAAGCACATCTACAGAGATTTCATCCTCCAGGTGCACCCGGACTTCT
TCCAGGACTCCCCCAAGGAGCGCGCCGTGAACGAAAAGAGTCTCAAGACC
TTCTCCCAGCACCTCGAGAGACTTCAACTTGGACAGCACGGACATGGACA
TGGACACGCCAATTCGTCGACGGGGGGGGACAGCTCGCTCGTGTTCTTCG
TCAAGCAAGCCGGAAGAAGCACGCACGACAAGGAAGCAGACGACAGCATC
AAACCGAGGCACGAGCACAACAGCGACGGCGACGTAGACGGTGGTGGCCC
CTCTCCTAAGAAGTTCCTCCTGCCCCTCGAGAATCACCATTTGATGGCCG
CCCACCTTCTCGAGGCAGGAATCACATCGGTCCTACTGCTTCCGACAGAA
CCTCCACGGCGCCAAGCCGATCACGCCTCCGCCCACAACCACAGCCGCCC
CGCTGGCGATACCTACAGCTCGGGGTGGCACAGCTGGGGGGACGATGTGT
TCGGTGGAACCGCGGCGAACAGGGCATGGGACGAGGCTGCTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGGCAGCGGCGGGCGAGCGCGCGGCCGATCGGC
CTTCAGCAGCGTCCAGGACAACACCCGCGAAGGCAGGCAGAGAACAACCC
AGTGGGGAGCGGCGTTCGAGAGAGCGAACGGCGACGGGGATGAGTCGACC
TCGAGGCTCGGGCGGGTGCTGGCGAGCGACTCGGGGAGGGCGCTCGTGAG
GGAGCGCCGGGCAAGCTCGCGCAAGGTCCGCCAGCTCGTGGAGGAGCTGC
GGGAACAGTATGGCTTCGGCGAGTTCACGTTCCGGTAAGGCTTAGGACTA
CACCCTGGTTGAATTTTTGTTCGTAGTGCAATTGCGGACAGCTTTCGTTG
CGCCATTGTTAAAGTACCCCATTTGTTTGCTTTTTTAGGCGATGTTGCCC
AACACAGCCGGTAGTGGTTGCTCACACAGCAGAGCTCAGTGTACAGCAGT
AGTCGGTCGACTTGCGACCAAGTTTGCAAAGTCGGTAGATGTACAAGATG
GTGCTCGCCGTAGTGGGCCGGGGGTCTTGTTGTTGCAAACAGCGCCACGG
ACCTATGTGACCCTCACCGTGCCCCGGCACACGTCCCAAATAGACATACC
TCTCAACGAAAAAACTTGAAGGGCAGCGGCGGGACTCAGCAGTTGTCTAC
AATATCAACATTTTCTTCAGACACAATATGTACACCCCGTGTCTAGCACA
CCGACCGCTTAGCAACGATAAAGTATCGCTGTCGACGGCCACGTTACCGC
AGATGTGGGTGGAGAAAAAATCTAACCTCTACATACAAGTCTGTCGCACA
GACCGCTTACCACGATGATGCATCACTACGCGTACGACGACCACGTTATC
TCAGATGTGGGTGGAGCAAATCTAACCTCTGCGTCGCGCTGGGCTCCCTC
CTTGAGACGTGCCACGCCCACCAAGGAACGTTGAACGTCCCGAATTTTGG
CGGGCTTGAAGTGGTTTTTCGGAATGATCCGTCCGCTCTTGACAAAGGTA
TAGGCAAACCTGACGAGAAAGAGAGATCTTGTCCATGTACACTATACATG
TTTGGAATCGAAGATGCGTCGAGTGCGCTCTTCTGTCAGAGCACAGCACG
CTCGCGAGATGCTTCGATTGATCCGCATTCACACAGCAGCAGAGTCGGAG
AAATGATGACCACGTAAATCGAGTCGTTTCTTGCGCTCTCTCGGGCCAGG
TGATGAGGCACTAGTTTCGGCGGGGCTTATCCATGCCGCCTTGCTTGCGC
AAGCTGCACAGCAATATTGATGCCGTCTTATCGTTGATGGGTGGCTAACT
CGCCGGGCGCCGCTTTCACGTTTCGTTCATAAAACCTCGGTGGTGCTCTG
AGATCCCAAATGAACAAGCCGCACTCCCACACGGCCTACAAGCGAACTGC
AAAGCTTAAGCTTTCTGTTCAACTTTCACCAGCATATTCCCCCGAACCGT
AACCCTTGCTGCCCACCCGTACGTTGAGCATGTTCCTCCTCTCCCCCGTT
GTGGGTGTCTTTTGCTGCATGAACTCTGTTCCACCACAAAGAGGAGATTA
GGCTGTGTCCCGCGGATGTGCCGAATCAGTGGATGGGGGTGCTACAACGC
GTGACGCCTGACGTGCTGTCGAGGGCGCTAGAGAGTTCCCGCGACATGGT
TTCGCTGCAGGAGAGAGCGTCTAGTGCTCTGCAGGGGGCTCAAATTTCGA
GGGGCCTCTCCTGCCCGAAACCAAGGTATGCATGGTCGAGTGCAGCACCG
GTGACCCCTCGCAAGAGCCCAATAGTCGGTCTGTGTCTGGCCTTGTGTTT
CCGTGGGCCCGAAGTCAATCTGCCCAAAAATAGCGAAGGCAAGAGGAGTG
TAGTACTGACCTCGCCGATGAGATGAGCCTCACTCCTCTTGTTGCTTTCT
TTCTTTTTAAGGGGCTAGTACTGCTGTGTTCACGCGAGTACTGGTATGAA
TAGTAGTAACGGTTGAGATTTTGTGGGTCAGAAACATATCCTGTGGTGAA
TGCCACGCTTCATCCTCTCTTTTGTGTATGAATAGCTTTATGTTCCAGAG
ACTCGAGAGATTCGCTTGCGACGTTCTAAAGCGGAGGGTGTTTTGGGACG
AGTTCCAACCAGCCCTCGCCAGGCTACCAGTATGCAAGCACCAAACGATG
CGCCCTCAGAAAATCCTCGCCGCCACATTCCTGAAGAAATATATGATAAA
TTTATGGTGTTTCTCTTCACGCACACCGCATATGGGGGAAAGTCGCGCGT
GAAATTGGATCCAATGAGACACTCTTATCTAATTGCCCCCGCTTTGTTGT
CGTTGTTTGTTCTCGGAGTCCAGGTATCGCGAGTTCCTGGGAAGGCTTTG
TGCGGAGGAGGGCGGCGTCGACATGGGCAATGGCCATGAAGCTGGGACAT
ATGTGTCCCTAGGGGATTGGTCGGGGTTGCACTGCAAGGTCGAAGAGGGC
TTCAGCCGTGTGTCCAAGGTGCTAGAGGACGGGACGATTCAGGTAATTGT
ACGGAGAAGCGCTTTGGGATTTGGCCCTCTAGCACCGCGCTCTGAAGAGC
AGCCCGTACATAGGTTGAAGCTTGAGTAGTGTTTTTGTCGACTAAGAGCA
CCCCGACCGGAAAAGACGAAAATGCACCGTACTAGATGTACACCCCACGT
GGGCACAGGCATCGCTCTCGTACCCTGACAGACGGGTGTTGATTCCGACA
CGGATGGCCACGTATACGAGATTTGCCGTATGTTCTTTGTGTGCTAAACG
TGGGCTGCATGCCTCGCGCCCGTCTGTTTCTCAAGGTGGTCGTCACGGGT
TGCGTGTTTTCCATCACATCCACTGCTGCTGTGTTTTCCGTGCATATGTT
GATGTTTAATTTTCGACAGGTTGGATCGGAAATGACCCTCGAGTCGCTGC
GGCGGTGCCTGCACAGGGACCTCGCCAGTTCCTCAGCCGCTGCAGCCAAG
AGCCTCCACCTTGCCGATGCCGCCGCCGCGAAGGCCCGGTCCTGCGGCCG
TTCACTATGCCTCGAAGCCGTCGACCGCGCCCCCCACGCGGTAAGCCTTC
CTCAGATGATCACCGCCTGCGAAGCGCTCGTAAAGTTCGGCGAGAGGGCC
GATAGTGGGAGCTTGGGCGCGGAGGCGGTGGCCGCCCGGAGGCGGCTGCG
CGGGCAGTGCGTTAGGATCGTTGGGTCGAGGGTGGGTGTCTGCGACGGGG
TCAACGAAGACGGGGAGATCCTCGTTGCTTGGAACTGGGCGGAGGAGGGG
GAGGAACAGGGGAGCAGCGGGCTGCGATCTTCGTCGCCGTTTTATTGATT
TTGATTAGTGTGTTTTCGCTCCTTGGTTTCGAGGTCGCGTTTTTTTCCTC
CCCGCCGCGTTGGCAGCCAGTTTTACTCCCGCCCGTGGTGCCTCCCTTGC
CCCCCTGAAATGGGATTGATTGGAACCTAGCTTGTTGAGTTATTGGACGC
GGATGCGTGGTGCTGTTTCTAGGCGTGCAGGTTGTGATTGGTACGTACAC
GGGACGAACCTCTGGCGGGTTTGTTTGCCGGTAGGGCTGCAAGCGTTCCG
TTGCACGTAAGTCTTGTCAGATGCTGCACGGCAGTGGCAGACGGCACTGC
TGTATCGCGTGGGAGACGGTGTGGATGGTGTGCACACAGGCCCCTCTTGT
TGGACACAAAAAATTAGACTACGTACAGCAGTAGATGGAAACAGCGTAGA
ATAGATGTAGCTGCTGGAAGCTGTTCCACGCGTAACTGCTGTTGCGAACG
GTGAAGAGAGATTGTATGCGTCATGCTTCTTCGGGGGGTAAATCGATCGA
GTAACATGGGAGTCGCGAGAGCATGTTTTCGCAAGCGTGTAGGAGCGGCG
TGTCGTCTACGGTGAGACCCACCGATGACTGGGTCGAGGATCGAAACCGG
GTGAGTCGAGCTAAATTCCCCTGTTCATGAGAGCACAAAAAT
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Coding sequence (CDS) from alignment at C-linearis_contig97:289311..293852+

>mRNA_C-linearis_contig97.17085.1 ID=mRNA_C-linearis_contig97.17085.1|Name=mRNA_C-linearis_contig97.17085.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3594bp|location=Sequence derived from alignment at C-linearis_contig97:289311..293852+ (Chordaria linearis ClinC8C monoicous)
ATGGGCACCAGCAGCATGAGCGACGAACGGCATGAGCAGTGGAAGCACAT
CTACAGAGATTTCATCCTCCAGGTGCACCCGGACTTCTTCCAGGACTCCC
CCAAGGAGCGCGCCGTGAACGAAAAGAGTCTCAAGACCTTCTCCCAGCAC
CTCGAGAGACTTCAACTTGGACAGCACGGACATGGACATGGACACGCCAA
TTCGTCGACGGGGGGGGACAGCTCGCTCGTGTTCTTCGTCAAGCAAGCCG
GAAGAAGCACGCACGACAAGGAAGCAGACGACAGCATCAAACCGAGGCAC
GAGCACAACAGCGACGGCGACGTAGACGGTGGTGGCCCCTCTCCTAAGAA
GTTCCTCCTGCCCCTCGAGAATCACCATTTGATGGCCGCCCACCTTCTCG
AGGCAGGAATCACATCGGTCCTACTGCTTCCGACAGAACCTCCACGGCGC
CAAGCCGATCACGCCTCCGCCCACAACCACAGCCGCCCCGCTGGCGATAC
CTACAGCTCGGGGTGGCACAGCTGGGGGGACGATGTGTTCGGTGGAACCG
CGGCGAACAGGGCATGGGACGAGGCTGCTGCTGCTGCTGCTGCTGCTGCT
GCTGCTGGCAGCGGCGGGCGAGCGCGCGGCCGATCGGCCTTCAGCAGCGT
CCAGGACAACACCCGCGAAGGCAGGCAGAGAACAACCCAGTGGGGAGCGG
CGTTCGAGAGAGCGAACGGCGACGGGGATGAGTCGACCTCGAGGCTCGGG
CGGGTGCTGGCGAGCGACTCGGGGAGGGCGCTCGTGAGGGAGCGCCGGGC
AAGCTCGCGCAAGGTCCGCCAGCTCGTGGAGGAGCTGCGGGAACAGTATG
GCTTCGGCGAGTTCACGTTCCGATGGGCACCAGCAGCATGAGCGACGAAC
GGCATGAGCAGTGGAAGCACATCTACAGAGATTTCATCCTCCAGGTGCAC
CCGGACTTCTTCCAGGACTCCCCCAAGGAGCGCGCCGTGAACGAAAAGAG
TCTCAAGACCTTCTCCCAGCACCTCGAGAGACTTCAACTTGGACAGCACG
GACATGGACATGGACACGCCAATTCGTCGACGGGGGGGGACAGCTCGCTC
GTGTTCTTCGTCAAGCAAGCCGGAAGAAGCACGCACGACAAGGAAGCAGA
CGACAGCATCAAACCGAGGCACGAGCACAACAGCGACGGCGACGTAGACG
GTGGTGGCCCCTCTCCTAAGAAGTTCCTCCTGCCCCTCGAGAATCACCAT
TTGATGGCCGCCCACCTTCTCGAGGCAGGAATCACATCGGTCCTACTGCT
TCCGACAGAACCTCCACGGCGCCAAGCCGATCACGCCTCCGCCCACAACC
ACAGCCGCCCCGCTGGCGATACCTACAGCTCGGGGTGGCACAGCTGGGGG
GACGATGTGTTCGGTGGAACCGCGGCGAACAGGGCATGGGACGAGGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGGCAGCGGCGGGCGAGCGCGCG
GCCGATCGGCCTTCAGCAGCGTCCAGGACAACACCCGCGAAGGCAGGCAG
AGAACAACCCAGTGGGGAGCGGCGTTCGAGAGAGCGAACGGCGACGGGGA
TGAGTCGACCTCGAGGCTCGGGCGGGTGCTGGCGAGCGACTCGGGGAGGG
CGCTCGTGAGGGAGCGCCGGGCAAGCTCGCGCAAGGTCCGCCAGCTCGTG
GAGGAGCTGCGGGAACAGTATGGCTTCGGCGAGTTCACGTTCCGATGTGG
GTGGAGCAAATCTAACCTCTGCGTCGCGCTGGGCTCCCTCCTTGAGACGT
GCCACGCCCACCAAGGAACGTTGAACGTCCCGAATTTTGGCGGGCTTGAA
GTGGTTTTTCGGAATGATCCGTCCGCTCTTGACAAAGATGTGGGTGGAGC
AAATCTAACCTCTGCGTCGCGCTGGGCTCCCTCCTTGAGACGTGCCACGC
CCACCAAGGAACGTTGAACGTCCCGAATTTTGGCGGGCTTGAAGTGGTTT
TTCGGAATGATCCGTCCGCTCTTGACAAAGAGGAGATTAGGCTGTGTCCC
GCGGATGTGCCGAATCAGTGGATGGGGGTGCTACAACGCGTGACGCCTGA
CGTGCTGTCGAGGGCGCTAGAGAGTTCCCGCGACATGGTTTCGCTGCAGG
AGAGAGCGTCTAGTGCTCTGCAGGGGGCTCAAATTTCGAGGGGCCTCTCC
TGCCCGAAACCAAGAGGAGATTAGGCTGTGTCCCGCGGATGTGCCGAATC
AGTGGATGGGGGTGCTACAACGCGTGACGCCTGACGTGCTGTCGAGGGCG
CTAGAGAGTTCCCGCGACATGGTTTCGCTGCAGGAGAGAGCGTCTAGTGC
TCTGCAGGGGGCTCAAATTTCGAGGGGCCTCTCCTGCCCGAAACCAAGGT
ATCGCGAGTTCCTGGGAAGGCTTTGTGCGGAGGAGGGCGGCGTCGACATG
GGCAATGGCCATGAAGCTGGGACATATGTGTCCCTAGGGGATTGGTCGGG
GTTGCACTGCAAGGTCGAAGAGGGCTTCAGCCGTGTGTCCAAGGTGCTAG
AGGACGGGACGATTCAGGTATCGCGAGTTCCTGGGAAGGCTTTGTGCGGA
GGAGGGCGGCGTCGACATGGGCAATGGCCATGAAGCTGGGACATATGTGT
CCCTAGGGGATTGGTCGGGGTTGCACTGCAAGGTCGAAGAGGGCTTCAGC
CGTGTGTCCAAGGTGCTAGAGGACGGGACGATTCAGGTTGGATCGGAAAT
GACCCTCGAGTCGCTGCGGCGGTGCCTGCACAGGGACCTCGCCAGTTCCT
CAGCCGCTGCAGCCAAGAGCCTCCACCTTGCCGATGCCGCCGCCGCGAAG
GCCCGGTCCTGCGGCCGTTCACTATGCCTCGAAGCCGTCGACCGCGCCCC
CCACGCGGTAAGCCTTCCTCAGATGATCACCGCCTGCGAAGCGCTCGTAA
AGTTCGGCGAGAGGGCCGATAGTGGGAGCTTGGGCGCGGAGGCGGTGGCC
GCCCGGAGGCGGCTGCGCGGGCAGTGCGTTAGGATCGTTGGGTCGAGGGT
GGGTGTCTGCGACGGGGTCAACGAAGACGGGGAGATCCTCGTTGCTTGGA
ACTGGGCGGAGGAGGGGGAGGAACAGGGGAGCAGCGGGCTGCGATCTTCG
TCGCCGTTTTATTGAGTTGGATCGGAAATGACCCTCGAGTCGCTGCGGCG
GTGCCTGCACAGGGACCTCGCCAGTTCCTCAGCCGCTGCAGCCAAGAGCC
TCCACCTTGCCGATGCCGCCGCCGCGAAGGCCCGGTCCTGCGGCCGTTCA
CTATGCCTCGAAGCCGTCGACCGCGCCCCCCACGCGGTAAGCCTTCCTCA
GATGATCACCGCCTGCGAAGCGCTCGTAAAGTTCGGCGAGAGGGCCGATA
GTGGGAGCTTGGGCGCGGAGGCGGTGGCCGCCCGGAGGCGGCTGCGCGGG
CAGTGCGTTAGGATCGTTGGGTCGAGGGTGGGTGTCTGCGACGGGGTCAA
CGAAGACGGGGAGATCCTCGTTGCTTGGAACTGGGCGGAGGAGGGGGAGG
AACAGGGGAGCAGCGGGCTGCGATCTTCGTCGCCGTTTTATTGA
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