mRNA_C-linearis_contig97.17085.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A6H5L9L6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9L6_9PHAE) HSP 1 Score: 619 bits (1595), Expect = 6.720e-211 Identity = 355/607 (58.48%), Postives = 423/607 (69.69%), Query Frame = 1 Query: 4 STRMGTSSMSDERHEQWKHIYRDFILQVHPDFFQDSPKERAVNEKSLKTFSQHLERL--QLGQHGXXXXXXNSSTGGDSSLVFFVKQAGRSTHDKEADDSIKPRHEHNSDGDVDGGGPSPKKFLLPLENHHLMAAHLLEAGITSVLLLPTEPPRRQADHASAHNH--SRPAGDTYS---SGWHSWGDDVFGGTAANRAWDEAAAXXXXXXXXXXXXRARGRSAFSSVQDNTREGRQRTTQWGAAFERANGDGDESTSRLGRVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAHQGTLNVPNFGGLEVVFRNDPSALDKEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAE---EGGVDMGNGHEAGTYVSLGDWSGLHCKVEEGFSRVSKVLEDGTIQVGSEMTLESLRRCLHRDLASSSAAAAKSLHLADAAAAKARSCGRSLCLEAVDRAPHAVSLPQMITACEALVKFGERADSGS---LGAEAVAARRRLRGQCVRIVGSRVGVCDGVNEDGEILVAWNWAEE--GEEQGSS 1779
ST G ++ S E+H++WK +YR F+L VHPDFF +SPK+RAVNEKSLK+ SQHL+RL + + G N++ G S LVFF+KQAG D+ A G G PS K +LPL +HH MA HL ++G++ V PP A+ AS H SRP + + S WH W DD+FGGTAANRAWDEAAA GRSAFSS D TREGRQRTT+WGAAFER +G S LG++L++D GRALVRERR+SSRKVR+LV ELREQYGFGEFTFRCGWSKSNLCVALGSL+ETC A +G V +FGGLEVVFRNDPS L K EIRLCP+DVPNQW+ L+RVTP VLS A E SR+M+SLQERAS AL+GA++SRGLSC K RYR+FL ++CA E G G +A + GDWS L C+VEEGF R S VLEDGTIQVGS+MTL++LRRCL RD SSSAA A+ L LA AAAA A C ++L LE++ R+ H V +M+ ACEALV+F ERA SG EAVAARRRLRG CVR+VGSRVGVCDGV EDGEI++ WNW EE GEE+ SS
Sbjct: 43 STHSGRTT-SPEQHQEWKSVYRAFLLHVHPDFFHESPKKRAVNEKSLKSLSQHLDRLGGEDTRSGGVHSRSNAANGSASPLVFFLKQAG----DEGA-------------GSKSDGSPSRGKVMLPLGSHHQMATHLYDSGMSGV-----SPPPAHAEQASTRRHHSSRPVDSSNNDNPSRWHGWEDDLFGGTAANRAWDEAAAGRNGSRD------THGRSAFSSDDDKTREGRQRTTEWGAAFERRSGH----ASWLGQILSTDEGRALVRERRSSSRKVRRLVGELREQYGFGEFTFRCGWSKSNLCVALGSLVETCRARRGEFLVNDFGGLEVVFRNDPSVLHKGEIRLCPSDVPNQWVSALRRVTPAVLSAAEEQSREMISLQERASRALRGARLSRGLSCSKSRYRDFLSKVCAAADAEPDEGDGGGGDAAADLVKGDWSDLMCRVEEGFRRASTVLEDGTIQVGSDMTLKTLRRCLGRDSDSSSAATAEYLELAVAAAATAERCRQALGLESIKRSRHTVGNSEMVMACEALVRFSERAKSGGDLRAEKEAVAARRRLRGHCVRVVGSRVGVCDGVTEDGEIVLPWNWWEEEDGEERRSS 616
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A662YBB6_9STRA (DUF4461 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YBB6_9STRA) HSP 1 Score: 80.1 bits (196), Expect = 8.030e-12 Identity = 91/346 (26.30%), Postives = 151/346 (43.64%), Query Frame = 1 Query: 769 LASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWS----KSNLCVALGSLLETCHAH-QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNGHEAGTYVSLGDWSGLHCKVEEGFSRVSKVLEDGTIQVGSEMTLESLRRCLHRD---LASSSAAAAKSLHLADAAAAKARSCGRSLCLEAVDRAPHAVSLPQMITACEALVKFGERADSGSLGAEAVAARRRLRGQCVRIVGSRV---GVCD----GVNEDGEILVAWNW 1749
+ +D A ++R+ + + ++ + L+ + G + CGWS +++ V L L + AH QG +F G + ++PS +D + I L PADVP QW+ VL+ + D++ + + +LQ A++AL A I+RG +C YR FL + + GH G L VE+G S VLE G +Q S+ + E + L ++ + S AA A +L +A A + C +L ++ + L I ACE L+K G AR L + VR V + +C G+ +DG + +W
Sbjct: 250 MRADDTMATQKQRQIAWQSIQSVKRTLKRELGVEDVLTSCGWSTMHLNTSIMVLLHILRQYTRAHKQGIFTPKDFLRGATIDISSNPSGIDFANEYRIGLNPADVPLQWVEVLETIDADMVVFMKAARESLEALQSNATAALGEAHITRGFTCSALGYRAFLQSMRSHNASFAADYGHS-----EQGLLEKLSLVVEDG-SYDWMVLETGHVQAPSDSSYEDVTEFLRKNRPRIRSQQAAHAANL---EAFAFISSRCAHTLGATSIT-CGDGIPLADAIVACEELLK-------AVAGLSPQGARNALPNEMVRFVDTYTQGRAICISRSFGLGQDGVFTLPVDW 578
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A662X3P7_9STRA (DUF4461 domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3P7_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 7.520e-10 Identity = 60/230 (26.09%), Postives = 106/230 (46.09%), Query Frame = 1 Query: 769 LASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWS----KSNLCVALGSLLETCHAH-QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNGHEAGTYVSLGDWSGLHCKVEEGFSRVSKVLEDGTIQVGSEMTLESLRRCLHRD 1431
+ +D A ++R+ + + ++ + L+ + G + CGWS +++ V L L + AH QG +F G + ++PS +D + I L PADVP QW+ VL+ + D++ + + LQ A++AL A I+RG +C YR FL + + GH + L +E+G S +LE G +Q S+ + E + L ++
Sbjct: 254 MRADDTMATQKQRQIAWQSIQSVKRTLKRELGIEDVLTSCGWSTMHLNTSIMVLLHILRQYTRAHKQGIFTPKDFLRGATIDISSNPSGIDFANEYRIGLNPADVPLQWVEVLETIDADMVVFMKAARESLEVLQSNATAALGEAHITRGFTCSALGYRTFLQSMRSHNSSSAADYGHNRQGLLEK-----LALVIEDG-SYDWMILETGHVQAPSDSSFEDVTEFLRKN 477
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: W2RD74_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RD74_PHYPN) HSP 1 Score: 72.0 bits (175), Expect = 2.410e-9 Identity = 102/425 (24.00%), Postives = 168/425 (39.53%), Query Frame = 1 Query: 67 RDFILQVHPDFFQDSPKERAVNEKSLKTFSQHLERLQLGQHGXXXXXXNSSTGGDSSLVFFVKQAGRSTHDKEADDSIKPRHEHNSDGDVDGGGPSPKKFLLPLENHHLMAAHLLEAGITSVLL---LPTEPPRRQA---DHASAHNHSRPAGD--------TYSSGWHSWGDDVFGGTAANRAWDEAAAXXXXXXXXXXXXRARGRSAFSSVQDNTREGRQRTTQWGAAFERANGDGDESTSRLGRVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNG 1272
+ F+L+VHPD F++ PK N S+K +Q ++ HG V+F S +E+ + IK + K+F PLE +AA++ EA + SVL + + +A AS H + G+ ++ SGW S FGG + + +A R+A +S ++ Q + L + D + + RR + + ++ + L+ + G + F CGWS +L LL+T + QG +F G + +PS +D + I L PADVP QW+ VL+ + +++ + + SLQ A++AL A ISRG +C YR FL R+ + D G
Sbjct: 9 KQFLLRVHPDHFRNIPKVHDENLHSVKLLNQFMDE-HYASHGGGGSLSWRRLAAPKEKVYFSVMVP-SLKAQESGEEIK----------------TLKRF--PLE----LAANI-EAKMISVLRECGVSVDQNTEEAAVSGTASQHRRVKKRGERRPDDWRRSHESGWKSPSGMDFGGFTMDEMYAKA-----------------NRAAAASASRRRKKPIQ------------------TLKGLLEYMKEDETVEIQQRRRIAWQSIQSVRGTLKRELGLEDVLFSCGWSTMHLNTTAMILLQTLRKYTRANKQGIFTPKDFLHGATIDISANPSGIDFSNEYRIVLNPADVPVQWIQVLETIDANMVLFMKAARESLKSLQTDATAALGEANISRGHTCSAIGYRAFLQRMRQRDAAYDSEQG 373
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A0W8C9T8_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C9T8_PHYNI) HSP 1 Score: 72.0 bits (175), Expect = 3.490e-9 Identity = 102/425 (24.00%), Postives = 168/425 (39.53%), Query Frame = 1 Query: 67 RDFILQVHPDFFQDSPKERAVNEKSLKTFSQHLERLQLGQHGXXXXXXNSSTGGDSSLVFFVKQAGRSTHDKEADDSIKPRHEHNSDGDVDGGGPSPKKFLLPLENHHLMAAHLLEAGITSVLL---LPTEPPRRQA---DHASAHNHSRPAGD--------TYSSGWHSWGDDVFGGTAANRAWDEAAAXXXXXXXXXXXXRARGRSAFSSVQDNTREGRQRTTQWGAAFERANGDGDESTSRLGRVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNG 1272
+ F+L+VHPD F++ PK N S+K +Q ++ HG V+F S +E+ + IK + K+F PLE +AA++ EA + SVL + + +A AS H + G+ ++ SGW S FGG + + +A R+A +S ++ Q + L + D + + RR + + ++ + L+ + G + F CGWS +L LL+T + QG +F G + +PS +D + I L PADVP QW+ VL+ + +++ + + SLQ A++AL A ISRG +C YR FL R+ + D G
Sbjct: 9 KQFLLRVHPDHFRNIPKVHDENLHSVKLLNQFMDE-HYASHGGGGSLSWRRLAAPKEKVYFSVMVP-SLKAQESGEEIK----------------TLKRF--PLE----LAANI-EAKMISVLRECGVSVDQNTEEAAVSGTASQHRRVKKRGERRPDDWRRSHESGWKSPSGMDFGGFTMDEMYAKA-----------------NRAAAASASRRRKKPIQ------------------TLKGLLEYMKEDETVEIQQRRRIAWQSIQSVRGTLKRELGLEDVLFSCGWSTMHLNTTAMILLQTLRKYTRANKQGIFTPKDFLHGATIDISANPSGIDFSNEYRIVLNPADVPVQWIQVLETIDANMVLFMKAARESLKSLQTDATAALGEANISRGHTCSALGYRAFLQRMRQRDAAYDSEQG 373
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A6A3KLI4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KLI4_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 5.500e-9 Identity = 49/159 (30.82%), Postives = 76/159 (47.80%), Query Frame = 1 Query: 805 RRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGG 1254
RR + ++ + L+ + G + F CGWS +L LL+T + QG +F G + +PS +D + I L PADVP QW+ VL+ + D++ + + +LQ A+SAL A ISRG +C YR FL + + G
Sbjct: 203 RRIAWESIQSVRNTLKRELGLEDVLFSCGWSTMHLNTTAMILLQTLRKYTRMNKQGIFTPKDFLRGATIDLSANPSGIDFSNEYRIGLNPADVPVQWVQVLETIDADMVVFMKATRESLATLQADATSALGEANISRGHTCSALGYRTFLQSMRRRDAG 361
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A6A3SEK8_9STRA (DUF4461 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3SEK8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 6.050e-9 Identity = 49/159 (30.82%), Postives = 75/159 (47.17%), Query Frame = 1 Query: 805 RRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALDKEE---IRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGG 1254
RR + ++ + L+ + G + F CGWS +L LL+T + QG +F G + +PS +D I L PADVP QW+ VL+ + D++ + + +LQ A+SAL A ISRG +C YR FL + + G
Sbjct: 155 RRIAWESIQSVRNTLKRELGLEDVLFSCGWSTMHLNTTAMILLQTLRKYTRANKQGIFTPKDFLRGATIDLSANPSGIDFSNAYRIGLNPADVPVQWVQVLETIDADMVVFMKATRESLATLQADATSALGEANISRGHTCSALGYRTFLQSMRRRDAG 313
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A329SB38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SB38_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 7.370e-9 Identity = 48/165 (29.09%), Postives = 81/165 (49.09%), Query Frame = 1 Query: 805 RRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFLGRLCAEEGGVDMGNG 1272
RR + + ++ + L+ + G + + CGWS +L LL+T + QG + +F G + +PS +D + I L PADVP QW+ VL+ + +++ + ++SLQ A++AL A ISRG +C YR FL + + D +G
Sbjct: 210 RRIAWQSIQSVRGTLKRELGLEDMLYSCGWSTMHLNTTAMILLQTLRKYARANKQGIFSPKDFLRGATIDISANPSGIDFSNEYRIELNPADVPVQWVQVLETIDANMVLFMKAARESLISLQTDATAALGEANISRGHTCSALGYRTFLQSMEQRDAAYDNESG 374
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: A0A2P4X8H3_9STRA (Mitochondrial protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X8H3_9STRA) HSP 1 Score: 69.7 bits (169), Expect = 1.210e-8 Identity = 49/171 (28.65%), Postives = 82/171 (47.95%), Query Frame = 1 Query: 742 ESTSRLGRVLASDSGRALVRERRASSRKVRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFL 1227
+S L + D + + R+ + + ++ + L+ + G + F CGWS +L + LL+T + QG +F G + +PS +D + I L PADVP QW+ VL+ + +++ + + SLQ A++AL A ISRG +C YR FL
Sbjct: 162 QSLKELLEFMKEDETMEIQKRRQIAWQSIQSVRGTLKRELGLEDVLFSCGWSTMHLNTTIMILLQTLRKYTRANKQGIFAPKDFLRGATIDISANPSGIDFSNEYRIGLNPADVPVQWVQVLETIDANMVLFMKAARESLASLQTDATAALGHANISRGHTCSALGYRTFL 332
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Match: G4Z057_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z057_PHYSP) HSP 1 Score: 63.5 bits (153), Expect = 9.620e-7 Identity = 43/143 (30.07%), Postives = 69/143 (48.25%), Query Frame = 1 Query: 826 VRQLVEELREQYGFGEFTFRCGWSKSNLCVALGSLLETCHAH-----QGTLNVPNF-GGLEVVFRNDPSALD---KEEIRLCPADVPNQWMGVLQRVTPDVLSRALESSRDMVSLQERASSALQGAQISRGLSCPKPRYREFL 1227
++ L+ + + F CGWS +L + LL+T + QG +F G + +PS +D + I L PADVP QW+ VL+ + +++ + + +LQ A++AL A ISRG +C YR FL
Sbjct: 158 IQSAKNTLKRELDLQDVLFSCGWSTMHLNTTVMILLQTLRKYSRANKQGIFTPKDFLRGATIDLSANPSGIDLSNEYRIVLNPADVPVQWVQVLETIDANMVVFMKAAQESLATLQADATAALGEANISRGHTCSALGYRTFL 300 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17085.1 >prot_C-linearis_contig97.17085.1 ID=prot_C-linearis_contig97.17085.1|Name=mRNA_C-linearis_contig97.17085.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=599bp MGTSSMSDERHEQWKHIYRDFILQVHPDFFQDSPKERAVNEKSLKTFSQHback to top mRNA from alignment at C-linearis_contig97:289311..293852+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17085.1 ID=mRNA_C-linearis_contig97.17085.1|Name=mRNA_C-linearis_contig97.17085.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=4542bp|location=Sequence derived from alignment at C-linearis_contig97:289311..293852+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:289311..293852+ >mRNA_C-linearis_contig97.17085.1 ID=mRNA_C-linearis_contig97.17085.1|Name=mRNA_C-linearis_contig97.17085.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3594bp|location=Sequence derived from alignment at C-linearis_contig97:289311..293852+ (Chordaria linearis ClinC8C monoicous)back to top |