Homology
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match:
D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI)
HSP 1 Score: 199 bits (506), Expect = 6.370e-61
Identity = 102/115 (88.70%), Postives = 106/115 (92.17%), Query Frame = 1
Query: 1 MKFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
MKFL FF+VCLTAVSGFVAP+ PRLS +VRP+TAA PMRMGLKED QK A ASVAVLTAAPA ATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR
Sbjct: 1 MKFLGFFVVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match:
A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA)
HSP 1 Score: 88.2 bits (217), Expect = 4.390e-18
Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 4 KFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
K L + + A S FVAP+AP + +AAP + T S A+L+AAPA ATEGT E LG +N A VPL + +INL+F WA+ QPEG+FF EYDERR
Sbjct: 3 KVLLAALCMVAAASAFVAPAAPTAIRATTTVMSAAPKAGAIA--------TVSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match:
A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA)
HSP 1 Score: 83.2 bits (204), Expect = 3.440e-16
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1
Query: 22 MVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
+V + FVAP+AP + + + +AAP ++G A TAS A+LT+AP ATEGT E G ++ +PL +V INL+F WA+ QPEG+FF EYDERR
Sbjct: 12 LVAAMGANAFVAPAAPTMRAATVMSMSAAP-KVG-------AIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 111
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match:
A0A7V5M5A5_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5M5A5_9BACT)
HSP 1 Score: 54.3 bits (129), Expect = 1.490e-5
Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1
Query: 187 AFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGD-FFAEYDERR 345
A+AT+GTGEPLG ++S+ +IV L +++ +LF +W+ Q +GD F EYD RR
Sbjct: 80 AWATDGTGEPLGIDDSRLLIVLLGVFITMLVLFISWSSKQDDGDDFVGEYDPRR 133
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match:
A0A7J7IM13_9RHOD (PSII 6.1 kDa protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM13_9RHOD)
HSP 1 Score: 53.1 bits (126), Expect = 3.640e-5
Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1
Query: 151 TTASVAVLTAAPA-FATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWA-KDQPEGDFFAEYDERR 345
TT + LT PA +AT+GTGEPLG ++S+ ++V L ++I LF W+ K + DF EYD RR
Sbjct: 65 TTVLASSLTFGPAAWATDGTGEPLGIDDSRLLVVLLGIFITILALFIGWSSKQDDQDDFVGEYDPRR 131
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match:
L1JFS1_GUITC (Uncharacterized protein n=4 Tax=Guillardia theta TaxID=55529 RepID=L1JFS1_GUITC)
HSP 1 Score: 52.4 bits (124), Expect = 4.950e-5
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 1
Query: 13 AFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMR----MGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQA----VIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
A + + A + F AP + L +R AT A M+ + + E +KA A AAPAFA EGTGE LG ++ + ++VPLF + LLF +A +Q DFF YD+RR
Sbjct: 5 ALLLALVAAAAAFTAPHSAGLR--LRSATPAMSMKADSNIRIPEGVKKALAPAIAFAGAAAPAFA-EGTGEALGVDDGKLLIPIIVVPLF----VFLLFQGFAANQDNEDFFDTYDQRR 116
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 6
0 1 Expect = 6.37e-61 / Id = 88.70 Expect = 4.39e-18 / Id = 45.61 Expect = 3.44e-16 / Id = 44.44 Expect = 1.49e-5 / Id = 48.15 Expect = 3.64e-5 / Id = 44.78 Expect = 4.95e-5 / Id = 36.97 Sequence D7G2S2_ECTSI A0A835Z064_9STRA A0A835ZAY3_9STRA A0A7V5M5A5_9BACT A0A7J7IM13_9RHOD L1JFS1_GUITC back to top
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930832.4974658-UTR-C-linearis_contig97:285867..286509 1622930832.4974658-UTR-C-linearis_contig97:285867..286509 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 285868..286509 - 1690881272.7995899-UTR-C-linearis_contig97:285867..286509 1690881272.7995899-UTR-C-linearis_contig97:285867..286509 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 285868..286509 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930832.511429-CDS-C-linearis_contig97:286509..286551 1622930832.511429-CDS-C-linearis_contig97:286509..286551 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 286510..286551 - 1690881272.8115578-CDS-C-linearis_contig97:286509..286551 1690881272.8115578-CDS-C-linearis_contig97:286509..286551 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 286510..286551 - 1622930832.530821-CDS-C-linearis_contig97:287691..287784 1622930832.530821-CDS-C-linearis_contig97:287691..287784 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 287692..287784 - 1690881272.8196049-CDS-C-linearis_contig97:287691..287784 1690881272.8196049-CDS-C-linearis_contig97:287691..287784 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 287692..287784 - 1622930832.5511105-CDS-C-linearis_contig97:288490..288703 1622930832.5511105-CDS-C-linearis_contig97:288490..288703 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 288491..288703 - 1690881272.8315735-CDS-C-linearis_contig97:288490..288703 1690881272.8315735-CDS-C-linearis_contig97:288490..288703 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 288491..288703 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17084.1
>prot_C-linearis_contig97.17084.1 ID=prot_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp
MKFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAA back to top mRNA from alignment at C-linearis_contig97:285868..288703-
Legend: polypeptide CDS UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17084.1 ID=mRNA_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2836bp|location=Sequence derived from alignment at C-linearis_contig97:285868..288703- (Chordaria linearis ClinC8C monoicous)ATGAAGTTCCTGGCCTTTTTCATGGTGTGCCTAACGGCAGTAAGCGGGTT
CGTTGCGCCCAGCGCCCCCCGCCTATCCACCTCCGTGCGTCCCGCGACCG
CCGCCGCACCCATGCGCATGGGCCTCAAGGAGGACTTCCAGAAGGCGGCC
ACCACCGCATCGGTGGCAGTCCTCACCGCCGCGCCTGCCTTTGCAACTGA
GGGAACCGGGGAG GTGCGTGCTGGTTTGGTTGTGGTGTTGGATGGGCTGG
AAAAGTTGGTTCATGCTACGTATTTTAGCTCGGTTTTGTTGACTTCGTGA
GTCAGTTCATGAGAGAGGGGAGAGAGCTTTTGGCCCCCCGCGCTTGAAGC
TGTTGTCTCTCTGTTCTCGGGATCATCGTCGTTTGGGAGTGTGTTCGAGA
ATCATGGGCCTTCGAAACGTGATCAAGTCACGGATACTCCACCCCAAGTC
GGCCGCTGTATGCATAGCTGGAGTTATCGAAAGACAATCGGTGAAAAAAA
TCGTAGTTCGGCGCAAACGTCTTGCTCTCACAGAGGAGCATGTTTCTTCC
CACAGCAGCAGCTACGAATGTGTAGCCAAAAATAACAAAATAACCAACAA
GCCCTACGTTTGGTTACCCCCTGAGTGGTTCAGACCGTGCGCATGTGCCG
ACTTTTGAAGCGGCTGGAGGCACTGAGGACAGGTGTGATATATGAATGCA
GCAAGTCGAACTACGCTGTATATTGCACCCGACATAGACACTTTTTATCC
ATCGTACTTTTTGTGTAGATAAATTACAAATTACACAAACGATGCCCTTT
TTCTGACTCCGCCTTTGTTCGCGTTCGTCTCTCGCTCTCTCGGTCGCTGT
GTGCGTAACATCATGTCATATGGTGGTGGATGCTTTTGGATGCTTTGGAT
GCTTTTCCTTCTCTCTCAGCCGCTCGGGTTCGAGAACTCGCAGGCCGTTA
TCGTTCCTCTGTTTTTCCTTGTCAGCATCAACCTGCTCTTCAACAACTGG
GCTAAGGACCAG GTGGGCACGATTGTGTACCTACAAGGTTGTACACACAA
TTTCGGCCTCCCCGTATTCTTTCGGTTGCAGTGTATAACTTGGTTTTCTA
GTGACACGCGAAGCCAAAACGACATCAAGCCTCTGATCTTCCGTTGTTTC
CAGCTTATAATGGAAGCGCCGCCGTGGTACACACCATAACACGGCAGCGC
GGTAGTGTAACGAACTCGGGTTGTACTCGGAGTATCCAGTATTCCGCCGC
GAAACCTGGCAACCTGGCCACCACACTACACGCACGAGCAACCGGCAGCT
GTTTAAACAGCCCATATAACTCCAGTGAAAATGCTCACCATCCAACAATC
GTCATGCTTGCCATTGCCATGTTCAACCACTTCCAAGTCAAGAAAGGCTC
GGAATTCCGTTTCTATAACTTGTCCGAGAAATCTGGTAAGTATGTCCTAG
AAAGCGCATCGACCGGTTCACTGCTGTGGAGGGATCGCCTACAAACAATC
GCTTATGCAGCCAACGATCGTATTTGGTGAACCGATCGAATATACATGTT
GATGTTTTGAGGCTACAGCAGCCGCGGCTCTCTGACTCTTGGTTGTGTTG
TGGCGAAGAGCCCACGCTCCTCTTTGAGTTGAGTCATCTGACGTTACACC
CTTGTCCATTCTGGGGATACATCTCCCCCCTTTTCCACTGCGGCGAGTGC
CCCTCAGATCAGTTGGAAAGAGGACGCAACACAGACGAATCTCTGTGGGT
GACGGAAACAATACCTGCCTAACTTTTTCTTGGGGTTGGTGTTTTTCGCG
AGAAGCGTTATCGCCCCGTGTTGGGTATGATACACACCTCTGAGTCATTT
CTCTCAAGCGACGATCTCATCTCAAACGTAGGTCGCACGATTCAAATTTG
GCAAACAGAAACTCTGTCACGAAAGTGTCATTCTTGTAGTGCTGGCAGCA
TCTCAATGCTAGTCGGCTGATGCAGGTCCGCCGGGCCGCCGGGTTTTATA
TTCTGCCTAAATTTCGGGCCTTGCATCCATCCGGTCACCATGTTCCCTAT
TTATTTCTGATTTCTGATTCCCCCATCCCTTCTTACCGATTTTTTTGTTT
TGTCTCGTGTTCGTCCCTCTCTTGTCTCACACTGTCTTGTCTTGCAATGC
AGCCGGAGGGCGACTTCTTCGCCGAGTACGACGAGAGGAGGTAA AATAGC
CCTTTAATCAGCCTTTTCCGTCTCGTGGGAGAGCGTAAGGAGATTCGCGC
AGGAGCAGCGCGCACCGGTAGCGGCGGGGGCAGCGGAGGACGATCCCGCA
TGGCCCCGAAGTGAAAAACCGCGAGAGATGTTCGATTCCGGGGTAGACAG
CTTCTTTGTTTTTTTTCGGCTTTCCACTAGGTGTCCCTAGTTAGAGGAGA
AAAGAGTCGGCCCTTCCCTGGTGTGGATGCCTCCCAGTAGAGCCAGCTTG
TATTTTTGTCTTTGGTTGTAGACTCGGGAAGCAGATCGGGGGAAGATTTT
TGGACTCTAGAAAGGGGGGGGGGTTCGGTGGGCTTGACTTGGCCACCTTT
TAAAAGAGCCGCACGGTTTGTCTGCCGTTTTTCAGCCTCGGCACGGGGTT
AGCGGCGGTCGAGCGCCTGCGGTACGCTCGGAGTTGTTCCTCCTGTTTTT
CGCTGTTGTCCATGTGTCCAGCTGGCGGGGGTTTTGAAGCGGCAGCATCA
GTTTTGAGTCCGGTTGTTGACTGCGTCAGACTGCTTAACATGCCTTCCTC
TTTTCTGTGACAGACGTCACACTCTTTTTTTTTTTTTGGTTTTCGGTAAA
TGATGCGCCTGAAAAGACCGACAAAGCATTATTAAG back to top Coding sequence (CDS) from alignment at C-linearis_contig97:285868..288703-
>mRNA_C-linearis_contig97.17084.1 ID=mRNA_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig97:285868..288703- (Chordaria linearis ClinC8C monoicous) back to top