mRNA_C-linearis_contig97.17084.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: D7G2S2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2S2_ECTSI) HSP 1 Score: 199 bits (506), Expect = 6.370e-61 Identity = 102/115 (88.70%), Postives = 106/115 (92.17%), Query Frame = 1 Query: 1 MKFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
MKFL FF+VCLTAVSGFVAP+ PRLS +VRP+TAA PMRMGLKED QK A ASVAVLTAAPA ATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR
Sbjct: 1 MKFLGFFVVCLTAVSGFVAPTGPRLSAAVRPSTAATPMRMGLKEDVQKVANAASVAVLTAAPALATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 115
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: A0A835Z064_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z064_9STRA) HSP 1 Score: 88.2 bits (217), Expect = 4.390e-18 Identity = 52/114 (45.61%), Postives = 66/114 (57.89%), Query Frame = 1 Query: 4 KFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
K L + + A S FVAP+AP + +AAP + T S A+L+AAPA ATEGT E LG +N A VPL + +INL+F WA+ QPEG+FF EYDERR
Sbjct: 3 KVLLAALCMVAAASAFVAPAAPTAIRATTTVMSAAPKAGAIA--------TVSAALLSAAPALATEGTSEALGIDNPLAFWVPLTVIFAINLIFFQWARTQPEGEFFGEYDERR 108
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: A0A835ZAY3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAY3_9STRA) HSP 1 Score: 83.2 bits (204), Expect = 3.440e-16 Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1 Query: 22 MVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
+V + FVAP+AP + + + +AAP ++G A TAS A+LT+AP ATEGT E G ++ +PL +V INL+F WA+ QPEG+FF EYDERR
Sbjct: 12 LVAAMGANAFVAPAAPTMRAATVMSMSAAP-KVG-------AIATASAALLTSAPVLATEGTSEAFGIDSPLGFWLPLTVIVFINLIFFQWARTQPEGEFFGEYDERR 111
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: A0A7V5M5A5_9BACT (Uncharacterized protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5M5A5_9BACT) HSP 1 Score: 54.3 bits (129), Expect = 1.490e-5 Identity = 26/54 (48.15%), Postives = 39/54 (72.22%), Query Frame = 1 Query: 187 AFATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWAKDQPEGD-FFAEYDERR 345
A+AT+GTGEPLG ++S+ +IV L +++ +LF +W+ Q +GD F EYD RR
Sbjct: 80 AWATDGTGEPLGIDDSRLLIVLLGVFITMLVLFISWSSKQDDGDDFVGEYDPRR 133
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: A0A7J7IM13_9RHOD (PSII 6.1 kDa protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM13_9RHOD) HSP 1 Score: 53.1 bits (126), Expect = 3.640e-5 Identity = 30/67 (44.78%), Postives = 42/67 (62.69%), Query Frame = 1 Query: 151 TTASVAVLTAAPA-FATEGTGEPLGFENSQAVIVPLFFLVSINLLFNNWA-KDQPEGDFFAEYDERR 345
TT + LT PA +AT+GTGEPLG ++S+ ++V L ++I LF W+ K + DF EYD RR
Sbjct: 65 TTVLASSLTFGPAAWATDGTGEPLGIDDSRLLVVLLGIFITILALFIGWSSKQDDQDDFVGEYDPRR 131
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Match: L1JFS1_GUITC (Uncharacterized protein n=4 Tax=Guillardia theta TaxID=55529 RepID=L1JFS1_GUITC) HSP 1 Score: 52.4 bits (124), Expect = 4.950e-5 Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 1 Query: 13 AFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMR----MGLKEDFQKAATTASVAVLTAAPAFATEGTGEPLGFENSQA----VIVPLFFLVSINLLFNNWAKDQPEGDFFAEYDERR 345
A + + A + F AP + L +R AT A M+ + + E +KA A AAPAFA EGTGE LG ++ + ++VPLF + LLF +A +Q DFF YD+RR
Sbjct: 5 ALLLALVAAAAAFTAPHSAGLR--LRSATPAMSMKADSNIRIPEGVKKALAPAIAFAGAAAPAFA-EGTGEALGVDDGKLLIPIIVVPLF----VFLLFQGFAANQDNEDFFDTYDQRR 116 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17084.1 >prot_C-linearis_contig97.17084.1 ID=prot_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=116bp MKFLAFFMVCLTAVSGFVAPSAPRLSTSVRPATAAAPMRMGLKEDFQKAAback to top mRNA from alignment at C-linearis_contig97:285868..288703- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17084.1 ID=mRNA_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2836bp|location=Sequence derived from alignment at C-linearis_contig97:285868..288703- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:285868..288703- >mRNA_C-linearis_contig97.17084.1 ID=mRNA_C-linearis_contig97.17084.1|Name=mRNA_C-linearis_contig97.17084.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=696bp|location=Sequence derived from alignment at C-linearis_contig97:285868..288703- (Chordaria linearis ClinC8C monoicous)back to top |