mRNA_C-linearis_contig97.17080.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig97.17080.1
Unique NamemRNA_C-linearis_contig97.17080.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: D7G2R9_ECTSI (Cilia- and flagella-associated protein 299 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R9_ECTSI)

HSP 1 Score: 456 bits (1173), Expect = 6.910e-162
Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 1
Query:    1 MSGKKDKASAEDLHVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            MSGK+DKASAEDLHVMDTVEQYE+YEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLS SPFLLALGNREELVRNGKLTSIIFVRDVN KGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS
Sbjct:    1 MSGKRDKASAEDLHVMDTVEQYETYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSASPFLLALGNREELVRNGKLTSIIFVRDVNSKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 239          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A835ZKU0_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKU0_9STRA)

HSP 1 Score: 350 bits (899), Expect = 4.260e-120
Identity = 181/242 (74.79%), Postives = 207/242 (85.54%), Query Frame = 1
Query:    1 MSGKKDKASAEDLHV---MDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            MS  K    AE  H+   +DTV        YLDSQVT TDMYYL+DEDLARQLVELGYRGSGDTLQR+EF ARKK+LR+R+TQK+NAPKQL+S+GK++  SPFL AL NREELVRNGKLTSIIF+RD N KGQEVSGYID+A RL++ NFEPYF+++KKLMP+P+DLSYYNWETQT+TSTSTPNFQVIAD EAGLLFKNKRDRKV+NVDPK PPGDNTTR E+++ EY QVVIYDHMTRRK 
Sbjct:    1 MSMPKGDKDAEGPHLQDTLDTVXXXXXXXXYLDSQVTATDMYYLEDEDLARQLVELGYRGSGDTLQRDEFYARKKSLRDRATQKSNAPKQLASAGKNVDSSPFLHALANREELVRNGKLTSIIFIRDKNSKGQEVSGYIDFAQRLKTENFEPYFDKKKKLMPKPSDLSYYNWETQTTTSTSTPNFQVIADSEAGLLFKNKRDRKVINVDPKVPPGDNTTRIEVKSLEYMQVVIYDHMTRRKG 242          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: F0Y4F2_AURAN (Cilia- and flagella-associated protein 299 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4F2_AURAN)

HSP 1 Score: 349 bits (896), Expect = 9.210e-120
Identity = 174/223 (78.03%), Postives = 202/223 (90.58%), Query Frame = 1
Query:   49 DTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            D++EQ+ SYEDYLD+QV+ETDMYYL+DE+LARQLVELGYRGSGDTL+R+EFEARK+ALRER TQK N PKQL+S+ KDLS  PFLLAL NRE LVRNGKLTSIIF+RD N KGQEVSGYIDYAHRL++ NFEPYF+ +K+LMP+PTDLSYYNWETQTST  STPNFQVIAD + GLLFKNKRDRKV+NVDPK  PGDN++R E++TPEY QVVI+DH+TRRK+
Sbjct:   13 DSLEQFASYEDYLDAQVSETDMYYLEDEELARQLVELGYRGSGDTLKRDEFEARKRALRERGTQKANVPKQLASANKDLSAQPFLLALANREALVRNGKLTSIIFLRDKNAKGQEVSGYIDYAHRLKTENFEPYFKGQKRLMPKPTDLSYYNWETQTSTHNSTPNFQVIADSD-GLLFKNKRDRKVINVDPKQNPGDNSSRNELKTPEYLQVVIFDHLTRRKN 234          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A7S1CI53_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI53_9STRA)

HSP 1 Score: 349 bits (895), Expect = 1.500e-119
Identity = 176/227 (77.53%), Postives = 200/227 (88.11%), Query Frame = 1
Query:   37 LHVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            L   D   +Y +YEDYLDSQV  TDM+YL+DE+LARQLVELGYRGSG+TL+R+EFE+RKKA RE+  +K NAPK L S GKDLS  PFL AL NREELVRNGKLTSIIF+RDVN KGQEVSGYIDYAHRL++ NFEPYF+R++KL+P+P+DLSYYNWETQTSTS S+PNFQVIAD EAGLLFKNKRDRKV+NVDPK+ PGDN+TRTEIRT EY QVVIYDHMTRRKS
Sbjct:   12 LESKDVALEYATYEDYLDSQVGTTDMFYLEDEELARQLVELGYRGSGETLKRDEFESRKKAEREKHLRKDNAPKPLFSMGKDLSAFPFLQALANREELVRNGKLTSIIFIRDVNAKGQEVSGYIDYAHRLKTENFEPYFDRKRKLLPKPSDLSYYNWETQTSTSNSSPNFQVIADNEAGLLFKNKRDRKVINVDPKSNPGDNSTRTEIRTKEYLQVVIYDHMTRRKS 238          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A1V9Z039_9STRA (Cilia- and flagella-associated protein 299 n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z039_9STRA)

HSP 1 Score: 343 bits (880), Expect = 2.790e-117
Identity = 168/223 (75.34%), Postives = 202/223 (90.58%), Query Frame = 1
Query:   49 DTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            D+++QY +YEDYLDSQ++ETD++YL+DE+LARQL+ELGYRG+G+TL+RE+F+ARKK+ RER+ QKTN PKQL+S+GKD S+ PFL AL  REE+VRNGKLTSIIF+RD N KGQEVSGYIDYA RL+S  FEPYFER+K+L+P+P+DLSYYNWETQT TS S+PNFQVIAD E GLLFKNKRDRKV+NVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRK+
Sbjct:   15 DSLDQYATYEDYLDSQISETDLFYLEDEELARQLIELGYRGTGETLRREDFDARKKSERERNAQKTNLPKQLASAGKDFSQMPFLSALATREEMVRNGKLTSIIFIRDRNPKGQEVSGYIDYALRLKSEPFEPYFERKKRLLPKPSDLSYYNWETQTCTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKANPGDNSTRTEIKTTEYMQVVIYDHMTRRKN 237          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A2R5GCS3_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCS3_9STRA)

HSP 1 Score: 341 bits (874), Expect = 2.820e-116
Identity = 174/224 (77.68%), Postives = 199/224 (88.84%), Query Frame = 1
Query:   52 TVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQ--EVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            ++EQ+ +YEDYLDSQ++ TD YYL+DE LARQLVELGYRGSG+TL+REEFEARKKA R+R +QK +APK L+S+ KDL+  PFL AL NREELVRNGKLTSIIF+RD   KGQ  EVSGYID+AHRL++ NFEPYF+R+KKLMP+PTDLSYYNWET TSTS STPNFQVIAD EAGLLFKNKRDRKV+NVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRKS
Sbjct:   20 SLEQFMTYEDYLDSQISSTDKYYLEDESLARQLVELGYRGSGETLKREEFEARKKAERDRHSQKKSAPKMLASASKDLNGFPFLQALANREELVRNGKLTSIIFIRDKTNKGQGQEVSGYIDFAHRLKTENFEPYFDRKKKLMPKPTDLSYYNWETHTSTSNSTPNFQVIADNEAGLLFKNKRDRKVINVDPKANPGDNSTRTEIQTDEYLQVVIYDHMTRRKS 243          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: H3G868_PHYRM (Cilia- and flagella-associated protein 299 n=24 Tax=Oomycota TaxID=4762 RepID=H3G868_PHYRM)

HSP 1 Score: 340 bits (872), Expect = 4.600e-116
Identity = 168/226 (74.34%), Postives = 204/226 (90.27%), Query Frame = 1
Query:   40 HVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            +  ++++Q+ +YEDYLDSQ++ETD++YL+DE+LARQLVELGYRGSG+TL+R++FEARK+A RER+ QKT+APK L+S+GKDLS+ PFL AL +RE+LVRNGKLT IIF+RD N KGQE+SGYIDYA RL++  FEPYFER+KKL+P+ +DLSYYNWETQTSTS STPNFQVIAD E GLLFKNKRDRKVVNVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRK+
Sbjct:   12 YASESLDQFATYEDYLDSQLSETDLFYLEDEELARQLVELGYRGSGETLRRDDFEARKRAERERNAQKTSAPKPLASAGKDLSQYPFLAALASREDLVRNGKLTCIIFIRDKNAKGQEISGYIDYALRLKNEPFEPYFERKKKLLPKSSDLSYYNWETQTSTSNSTPNFQVIADSETGLLFKNKRDRKVVNVDPKANPGDNSTRTEIKTKEYLQVVIYDHMTRRKT 237          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A812J512_9DINO (Cilia- and flagella-associated protein 299 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812J512_9DINO)

HSP 1 Score: 325 bits (833), Expect = 3.110e-110
Identity = 164/221 (74.21%), Postives = 187/221 (84.62%), Query Frame = 1
Query:   55 VEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            V  + +YEDYLDSQ+TE DMYYL DE+LARQLVELGYRG G+  +REEFEA KKA RE+   K +AP+ L+S GKDL+  PFL AL NREELVRNGKLT+IIF+RD N KGQEVSGYID+AHRL++ NFEPYFE  K LMPRP+DLSYYNWETQTSTS S+PNFQVIAD E GLLFKNKRDRKV+NVDPKA  GDN+TR+EIRT E+ QVV+YDHMTRRK 
Sbjct:   10 VTSFATYEDYLDSQITELDMYYLDDEELARQLVELGYRGDGEPKKREEFEALKKAEREKHLHKDSAPRPLASLGKDLADKPFLQALANREELVRNGKLTTIIFIRDYNAKGQEVSGYIDFAHRLKTENFEPYFEGTKTLMPRPSDLSYYNWETQTSTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKASAGDNSTRSEIRTHEFAQVVLYDHMTRRKG 230          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A3R7IPN8_9STRA (Cilia- and flagella-associated protein 299 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IPN8_9STRA)

HSP 1 Score: 334 bits (856), Expect = 3.180e-109
Identity = 166/226 (73.45%), Postives = 202/226 (89.38%), Query Frame = 1
Query:   40 HVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            +  ++++Q+ +YEDYLDSQ++ETD++YL+DE+LARQLVELGYRGSG+TL+R++FEARK+A RER+ QKT+APK L+S+GKDLS+ PFL AL +RE+LVRNGKLT IIF+RD N KGQE+SGYIDYA RL++  FE YFER+KKL+P+ +DLSYYNWETQTSTS ST NFQVIAD E GLLFKNKRDRKVVNVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRK+
Sbjct:  329 YASESLDQFATYEDYLDSQLSETDLFYLEDEELARQLVELGYRGSGETLRRDDFEARKRAERERNAQKTSAPKPLASAGKDLSQFPFLAALASREDLVRNGKLTCIIFIRDKNAKGQEISGYIDYALRLKNEPFETYFERKKKLLPKSSDLSYYNWETQTSTSNSTQNFQVIADSETGLLFKNKRDRKVVNVDPKANPGDNSTRTEIKTKEYLQVVIYDHMTRRKT 554          
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A397FJ49_9STRA (Cilia- and flagella-associated protein 299 n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FJ49_9STRA)

HSP 1 Score: 327 bits (839), Expect = 3.760e-109
Identity = 165/237 (69.62%), Postives = 201/237 (84.81%), Query Frame = 1
Query:   49 DTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLT--------------SIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717
            +++++Y +YEDYLDSQ++ETD++YL+DE+LARQLVELGYRG+G+TL+RE+F+ARKK  R+R+ QKTN PKQL+S+GKD S+  FL AL NREE+VRNGKLT              SI+F+RD N KGQEVSGYIDYA RL+S  FEPYFER+K+L+P+P+DLSYYNWETQT TS S+PNFQVIAD E GLLFKNKRDRKV+NVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRK+
Sbjct:  130 ESLDKYATYEDYLDSQISETDIFYLEDEELARQLVELGYRGTGETLRREDFDARKKMERDRNAQKTNLPKQLASAGKDFSQLAFLSALANREEMVRNGKLTVKCPLAYLWRSDTHSIVFIRDHNSKGQEVSGYIDYALRLKSEAFEPYFERKKRLLPKPSDLSYYNWETQTCTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKANPGDNSTRTEIKTNEYMQVVIYDHMTRRKN 366          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R9_ECTSI6.910e-16298.33Cilia- and flagella-associated protein 299 n=2 Tax... [more]
A0A835ZKU0_9STRA4.260e-12074.79Cilia- and flagella-associated protein 299 n=1 Tax... [more]
F0Y4F2_AURAN9.210e-12078.03Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A7S1CI53_9STRA1.500e-11977.53Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A1V9Z039_9STRA2.790e-11775.34Cilia- and flagella-associated protein 299 n=10 Ta... [more]
A0A2R5GCS3_9STRA2.820e-11677.68Cilia- and flagella-associated protein 299 n=1 Tax... [more]
H3G868_PHYRM4.600e-11674.34Cilia- and flagella-associated protein 299 n=24 Ta... [more]
A0A812J512_9DINO3.110e-11074.21Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A3R7IPN8_9STRA3.180e-10973.45Cilia- and flagella-associated protein 299 n=2 Tax... [more]
A0A397FJ49_9STRA3.760e-10969.62Cilia- and flagella-associated protein 299 n=4 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig97contigC-linearis_contig97:252129..255553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score353.2
Seed ortholog evalue9.5e-95
Seed eggNOG ortholog44056.XP_009035204.1
Preferred nameC4orf22
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain of unknown function (DUF4464)
EggNOG OGs28K8J@1,2QSP8@2759
Ec32 ortholog descriptionPutative: flagellar/basal body protein [Chlamydomonas reinhardtii].
Ec32 orthologEc-11_003260.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons6
Model size720
Cds size720
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig97.17080.1prot_C-linearis_contig97.17080.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig97 252129..255553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930832.0166256-CDS-C-linearis_contig97:252128..2522991622930832.0166256-CDS-C-linearis_contig97:252128..252299Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 252129..252299 -
1690881272.5627022-CDS-C-linearis_contig97:252128..2522991690881272.5627022-CDS-C-linearis_contig97:252128..252299Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 252129..252299 -
1622930832.0377157-CDS-C-linearis_contig97:252935..2530161622930832.0377157-CDS-C-linearis_contig97:252935..253016Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 252936..253016 -
1690881272.5783534-CDS-C-linearis_contig97:252935..2530161690881272.5783534-CDS-C-linearis_contig97:252935..253016Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 252936..253016 -
1622930832.0551114-CDS-C-linearis_contig97:253425..2536141622930832.0551114-CDS-C-linearis_contig97:253425..253614Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 253426..253614 -
1690881272.590293-CDS-C-linearis_contig97:253425..2536141690881272.590293-CDS-C-linearis_contig97:253425..253614Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 253426..253614 -
1622930832.0811512-CDS-C-linearis_contig97:254281..2543691622930832.0811512-CDS-C-linearis_contig97:254281..254369Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 254282..254369 -
1690881272.6023993-CDS-C-linearis_contig97:254281..2543691690881272.6023993-CDS-C-linearis_contig97:254281..254369Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 254282..254369 -
1622930832.104081-CDS-C-linearis_contig97:254819..2549141622930832.104081-CDS-C-linearis_contig97:254819..254914Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 254820..254914 -
1690881272.6136527-CDS-C-linearis_contig97:254819..2549141690881272.6136527-CDS-C-linearis_contig97:254819..254914Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 254820..254914 -
1622930832.124126-CDS-C-linearis_contig97:255457..2555531622930832.124126-CDS-C-linearis_contig97:255457..255553Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 255458..255553 -
1690881272.623789-CDS-C-linearis_contig97:255457..2555531690881272.623789-CDS-C-linearis_contig97:255457..255553Chordaria linearis ClinC8C monoicousCDSC-linearis_contig97 255458..255553 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig97.17080.1

>prot_C-linearis_contig97.17080.1 ID=prot_C-linearis_contig97.17080.1|Name=mRNA_C-linearis_contig97.17080.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=240bp
MSGKKDKASAEDLHVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQL
VELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPF
LLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPY
FERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDR
KVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS*
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mRNA from alignment at C-linearis_contig97:252129..255553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17080.1 ID=mRNA_C-linearis_contig97.17080.1|Name=mRNA_C-linearis_contig97.17080.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3425bp|location=Sequence derived from alignment at C-linearis_contig97:252129..255553- (Chordaria linearis ClinC8C monoicous)
ATGTCGGGAAAGAAGGACAAAGCGTCCGCGGAGGACCTCCACGTGATGGA TACAGTGGAGCAGTATGAATCCTATGAAGACTACCTAGACTCGCAGGTGC GGTTTTGCTTCCGGATTACTATTATTACAGCATGGAGTGATGGTTGTTGT GCTAGGTGTGGCCAGGGACGTGCTCGCCAACCTTTGGCTTTGTTGGTGAG CTTCGTCACGTTGGTTCGCCGTGAGTTGACTGCTACGGACCCAAGCCCCT CCGGCGTTGATTCGTACACAGCGGTGTTATAACAAAAAAAAATCCCTTTG GATACGGAATGGCTACAAGAAACTGGTTGCAGCTTTCTGAGAGCCACCCT GCTAGGATCAAGAAATTGCCAGGCTCACGACGAGTGACTGTGCCCTAGGC CCGGAAAAAAATGTTCCTTGTGCAGACTTTTTTTGGCCTATAAGCCGGCT CCGCATAGATTCACCTCAAAGGCACTAATTTACCAGAGTCTTGATTCTCA TCACTCCAGGTACTCCGAGTTCTCCCGTAATGTAACTTCTTGTAGCGCAC ACCCCAGGAAGACAACTAGCAAAACTTTGAACCGACTGCTCAGGCCGAGC TATGTGGTACTTACTTGACACCATCGATCTCTCCGGCAGGTTACCGAGAC CGACATGTACTACCTGCAAGATGAGGACCTGGCGCGCCAGTTGGTCGAGC TGGGCTATCGGGGCTCAGGAGACACCCTCCAAAGGTGAGAACATTTGGTG CAGTCGGGAAGGCCGGCCTCTTGCACGGGTGGGTGCAGTGTATCACGTTG AGTTTCCGTGGCGCAAGGGTGAGTTTATCGCACCTGGTATCCATTCCAAG TCGTACTGCAGTTCCCTTGTCTCACAGGGGCCAGCGGTGGTACATATGAT ATGGAGACATTACACGCACACGTGGCTTTTGGGGCTGGTCCTACATAATA CTCCGTACGTACCTCTTAGCTGCTTGGTGTCAGAAATACCTGATCTGTAA TAAGTTAGTAGAATTTCACGAAGAAAAGCCCTCAGCAATGATGACGTAGT GAAACACCCCTACATTACCTACCGCAAATATTTGTCGTGCTTCATGTCTA CCGTTCGGGCTTACTCTCTCTCTCTTCATGCTACAATAAAAAAACTGGTT TTGCACGCCGGCCGTGCGATCACTTGCAACGAAGGGAGGAGTTTGAGGCG CGAAAAAAGGCCCTTCGAGAACGCTCCACCCAAAAAACCAATGCCCCGAA GCAGCTGTCGAGCTCTGGCAAGGTGAGGGTGACCGAGGGCGGTTTGCACG CCAGGCACGGTCGGCGACGCTCAGCATCCACAGTGCAGCCTAATTTATTA AGGGGACAAACCATCGCGCTTTCCTTCAGACCAACCCTTGAAAGCCCCAG GCGTTTGACTGAAATCTCTCCTGAGTTCTGCGCGGGAGGTGGTGTCGTTA CTGGTTCCATCAAGACAACCCCGACTACCTAGCTAGGAGAACTCGACGAG TGGCCAATCAAAACTTGACAAGTTATGTTGTCGTGTTTCTCGAGCACAGC ATATCCCCCCACCCGGGAGCTTAAAGTTCTCTTTTGCCGGACAATTTTGT TCTTGCGGGGGGGGGGGCTCGCGGCAGCAACGGTATATCAATGATTTGTC CGGGTACCCATCGATGGCTCTCATATCATCATACTTAATGGAAAATGTAT GGTTTGAATTAGGCTTTTCTGACCCGCCACTCCAGCCAACTACTTGCAAG AGAACCAACTATTTTTCTACGCTCCCTCAAGAAGTGCAGACACCTCCTCC CGAACTCCCGCCACACTGTCCACCCGGCATTCCCCTACACCCATCCATCG ATATCCGGTCCACCGCCGGCTCTTTGCTCCCTTCCCGCGACAAAAAAACG GCAATGGACATTCTTGACATTCTTGACATTCTCATCAAGGACTTGAGCAA GTCTCCCTTCTTGCTCGCCCTCGGGAACCGAGAGGAGCTGGTTCGTAACG GCAAGCTCACCTCCATCATCTTCGTCCGGGACGTGAACTGCAAGGGGCAG GAGGTCAGCGGCTACATCGACTACGCGCACCGGTTGAGGTCGACCAACTT CGAGCCGTACTTCGAGCGGCGGAAGAAGGTGAGGACAGGAGGAGGAAGGT CCGTTAGGCGCGGGTCTTGTTTTTTTGCGCTTTTTTCGATTCCAATGTCG ATCGATCGCGCGAGCTGATCCCTGGAATATAAAATAAAATGTCTCCCATC AGAGAAGGTCGAACGAGTTGTTAACCAAGGCCGCGGTATGGGTACATTAT TTCACTTCACCTGTCGGCGGGGAGGCTGTCACAACCTACCCCTTAACCCC GATGTGGTTCGCGTTTTGCCCGGGCCGAGGGCCTGAAAACGATGATTTCG TCCGGGTCAACCACCTTCTTGAAATATGCTATGTGTTCCGGTTCCGTATC CTTATGTGCGTACGGCCTTGATATCCCACCTGTCGCTTCAATTTCGCAAC CACCTTACTAATCTGGACGGCAACGCGCAACGAGCAGCTCATGCCTCGGC CAACGGACCTAAGCTACTACAATTGGGAGACGCAGACATCGACGTCGACC TCTACACCCAACTTTCAGGTATAGTCTAACATGCAAAATTCCTGCAGTTG ACTTCCTCCCTCGGCTGTTTAGCTGAACAACTCCTCCCCCGTTTGCACTG CTGTGCAATCTTGGCGGAGAAAACACCGGCTTCATTGTTTGCTGTTGTTG GAGCTAGAGGGTAGCTAGGAGGGTGGTGATTTTCGGTTGGCTGGAGGAGA GTCCGCCGTCGTTCTGTTGCGTCTAGACTCTGTAGCACACCATGTGGTAC AGCAGTAGTAGTAGTACTGTTTATTTTCCGCCGCAAATCCCCCATCCACC CTTCCTTCTTGTGTGCTTGCTTGTAATGAGCCGCGTCGCGGCGCAGGCGC GACTTATTTTACTGCCACGGCTTGTTCATACACTTAGAATGGTTCTTCTT TCCCCAACCCCCCCTCCCCCCCTCCCCTCCCTTGTCGCCTGCGAACGGGC AAGCGGTTGTTTGGTCGTTTGGTTGTTTGGTCAAGACCATCGAGTGCGAC CGCAAGGTCAACAGACTATATCGTGAGGCAAAAAGGACACAAGCGAATTG TGTGCGTACGAACAGATCCCCACCGCCCCAAACCGCCGCCACGTGTGTGT GCTGTGCTGTATGCATGCAACCATTGGCAACATTGGTGACGACATTGGTG ACAGGTCATTGCCGACGGGGAAGCGGGGTTGTTGTTCAAGAACAAACGAG ACCGAAAAGTCGTTAACGTTGACCCCAAGGCCCCGCCGGGCGACAACACC ACCAGGACGGAGATTCGCACGCCGGAGTATCGGCAGGTGGTGATCTACGA CCACATGACCAGAAGAAAGAGCTAA
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Coding sequence (CDS) from alignment at C-linearis_contig97:252129..255553-

>mRNA_C-linearis_contig97.17080.1 ID=mRNA_C-linearis_contig97.17080.1|Name=mRNA_C-linearis_contig97.17080.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at C-linearis_contig97:252129..255553- (Chordaria linearis ClinC8C monoicous)
ATGTCGGGAAAGAAGGACAAAGCGTCCGCGGAGGACCTCCACGTGATGGA
TACAGTGGAGCAGTATGAATCCTATGAAGACTACCTAGACTCGCAGATGT
CGGGAAAGAAGGACAAAGCGTCCGCGGAGGACCTCCACGTGATGGATACA
GTGGAGCAGTATGAATCCTATGAAGACTACCTAGACTCGCAGGTTACCGA
GACCGACATGTACTACCTGCAAGATGAGGACCTGGCGCGCCAGTTGGTCG
AGCTGGGCTATCGGGGCTCAGGAGACACCCTCCAAAGGTTACCGAGACCG
ACATGTACTACCTGCAAGATGAGGACCTGGCGCGCCAGTTGGTCGAGCTG
GGCTATCGGGGCTCAGGAGACACCCTCCAAAGGGAGGAGTTTGAGGCGCG
AAAAAAGGCCCTTCGAGAACGCTCCACCCAAAAAACCAATGCCCCGAAGC
AGCTGTCGAGCTCTGGCAAGGGAGGAGTTTGAGGCGCGAAAAAAGGCCCT
TCGAGAACGCTCCACCCAAAAAACCAATGCCCCGAAGCAGCTGTCGAGCT
CTGGCAAGGACTTGAGCAAGTCTCCCTTCTTGCTCGCCCTCGGGAACCGA
GAGGAGCTGGTTCGTAACGGCAAGCTCACCTCCATCATCTTCGTCCGGGA
CGTGAACTGCAAGGGGCAGGAGGTCAGCGGCTACATCGACTACGCGCACC
GGTTGAGGTCGACCAACTTCGAGCCGTACTTCGAGCGGCGGAAGAAGGAC
TTGAGCAAGTCTCCCTTCTTGCTCGCCCTCGGGAACCGAGAGGAGCTGGT
TCGTAACGGCAAGCTCACCTCCATCATCTTCGTCCGGGACGTGAACTGCA
AGGGGCAGGAGGTCAGCGGCTACATCGACTACGCGCACCGGTTGAGGTCG
ACCAACTTCGAGCCGTACTTCGAGCGGCGGAAGAAGCTCATGCCTCGGCC
AACGGACCTAAGCTACTACAATTGGGAGACGCAGACATCGACGTCGACCT
CTACACCCAACTTTCAGCTCATGCCTCGGCCAACGGACCTAAGCTACTAC
AATTGGGAGACGCAGACATCGACGTCGACCTCTACACCCAACTTTCAGGT
CATTGCCGACGGGGAAGCGGGGTTGTTGTTCAAGAACAAACGAGACCGAA
AAGTCGTTAACGTTGACCCCAAGGCCCCGCCGGGCGACAACACCACCAGG
ACGGAGATTCGCACGCCGGAGTATCGGCAGGTGGTGATCTACGACCACAT
GACCAGAAGAAAGAGCTAAGTCATTGCCGACGGGGAAGCGGGGTTGTTGT
TCAAGAACAAACGAGACCGAAAAGTCGTTAACGTTGACCCCAAGGCCCCG
CCGGGCGACAACACCACCAGGACGGAGATTCGCACGCCGGAGTATCGGCA
GGTGGTGATCTACGACCACATGACCAGAAGAAAGAGCTAA
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