mRNA_C-linearis_contig97.17080.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: D7G2R9_ECTSI (Cilia- and flagella-associated protein 299 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R9_ECTSI) HSP 1 Score: 456 bits (1173), Expect = 6.910e-162 Identity = 235/239 (98.33%), Postives = 237/239 (99.16%), Query Frame = 1 Query: 1 MSGKKDKASAEDLHVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 MSGK+DKASAEDLHVMDTVEQYE+YEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLS SPFLLALGNREELVRNGKLTSIIFVRDVN KGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS Sbjct: 1 MSGKRDKASAEDLHVMDTVEQYETYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSASPFLLALGNREELVRNGKLTSIIFVRDVNSKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 239
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A835ZKU0_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKU0_9STRA) HSP 1 Score: 350 bits (899), Expect = 4.260e-120 Identity = 181/242 (74.79%), Postives = 207/242 (85.54%), Query Frame = 1 Query: 1 MSGKKDKASAEDLHV---MDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 MS K AE H+ +DTV YLDSQVT TDMYYL+DEDLARQLVELGYRGSGDTLQR+EF ARKK+LR+R+TQK+NAPKQL+S+GK++ SPFL AL NREELVRNGKLTSIIF+RD N KGQEVSGYID+A RL++ NFEPYF+++KKLMP+P+DLSYYNWETQT+TSTSTPNFQVIAD EAGLLFKNKRDRKV+NVDPK PPGDNTTR E+++ EY QVVIYDHMTRRK Sbjct: 1 MSMPKGDKDAEGPHLQDTLDTVXXXXXXXXYLDSQVTATDMYYLEDEDLARQLVELGYRGSGDTLQRDEFYARKKSLRDRATQKSNAPKQLASAGKNVDSSPFLHALANREELVRNGKLTSIIFIRDKNSKGQEVSGYIDFAQRLKTENFEPYFDKKKKLMPKPSDLSYYNWETQTTTSTSTPNFQVIADSEAGLLFKNKRDRKVINVDPKVPPGDNTTRIEVKSLEYMQVVIYDHMTRRKG 242
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: F0Y4F2_AURAN (Cilia- and flagella-associated protein 299 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4F2_AURAN) HSP 1 Score: 349 bits (896), Expect = 9.210e-120 Identity = 174/223 (78.03%), Postives = 202/223 (90.58%), Query Frame = 1 Query: 49 DTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 D++EQ+ SYEDYLD+QV+ETDMYYL+DE+LARQLVELGYRGSGDTL+R+EFEARK+ALRER TQK N PKQL+S+ KDLS PFLLAL NRE LVRNGKLTSIIF+RD N KGQEVSGYIDYAHRL++ NFEPYF+ +K+LMP+PTDLSYYNWETQTST STPNFQVIAD + GLLFKNKRDRKV+NVDPK PGDN++R E++TPEY QVVI+DH+TRRK+ Sbjct: 13 DSLEQFASYEDYLDAQVSETDMYYLEDEELARQLVELGYRGSGDTLKRDEFEARKRALRERGTQKANVPKQLASANKDLSAQPFLLALANREALVRNGKLTSIIFLRDKNAKGQEVSGYIDYAHRLKTENFEPYFKGQKRLMPKPTDLSYYNWETQTSTHNSTPNFQVIADSD-GLLFKNKRDRKVINVDPKQNPGDNSSRNELKTPEYLQVVIFDHLTRRKN 234
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A7S1CI53_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI53_9STRA) HSP 1 Score: 349 bits (895), Expect = 1.500e-119 Identity = 176/227 (77.53%), Postives = 200/227 (88.11%), Query Frame = 1 Query: 37 LHVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 L D +Y +YEDYLDSQV TDM+YL+DE+LARQLVELGYRGSG+TL+R+EFE+RKKA RE+ +K NAPK L S GKDLS PFL AL NREELVRNGKLTSIIF+RDVN KGQEVSGYIDYAHRL++ NFEPYF+R++KL+P+P+DLSYYNWETQTSTS S+PNFQVIAD EAGLLFKNKRDRKV+NVDPK+ PGDN+TRTEIRT EY QVVIYDHMTRRKS Sbjct: 12 LESKDVALEYATYEDYLDSQVGTTDMFYLEDEELARQLVELGYRGSGETLKRDEFESRKKAEREKHLRKDNAPKPLFSMGKDLSAFPFLQALANREELVRNGKLTSIIFIRDVNAKGQEVSGYIDYAHRLKTENFEPYFDRKRKLLPKPSDLSYYNWETQTSTSNSSPNFQVIADNEAGLLFKNKRDRKVINVDPKSNPGDNSTRTEIRTKEYLQVVIYDHMTRRKS 238
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A1V9Z039_9STRA (Cilia- and flagella-associated protein 299 n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z039_9STRA) HSP 1 Score: 343 bits (880), Expect = 2.790e-117 Identity = 168/223 (75.34%), Postives = 202/223 (90.58%), Query Frame = 1 Query: 49 DTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 D+++QY +YEDYLDSQ++ETD++YL+DE+LARQL+ELGYRG+G+TL+RE+F+ARKK+ RER+ QKTN PKQL+S+GKD S+ PFL AL REE+VRNGKLTSIIF+RD N KGQEVSGYIDYA RL+S FEPYFER+K+L+P+P+DLSYYNWETQT TS S+PNFQVIAD E GLLFKNKRDRKV+NVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRK+ Sbjct: 15 DSLDQYATYEDYLDSQISETDLFYLEDEELARQLIELGYRGTGETLRREDFDARKKSERERNAQKTNLPKQLASAGKDFSQMPFLSALATREEMVRNGKLTSIIFIRDRNPKGQEVSGYIDYALRLKSEPFEPYFERKKRLLPKPSDLSYYNWETQTCTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKANPGDNSTRTEIKTTEYMQVVIYDHMTRRKN 237
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A2R5GCS3_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCS3_9STRA) HSP 1 Score: 341 bits (874), Expect = 2.820e-116 Identity = 174/224 (77.68%), Postives = 199/224 (88.84%), Query Frame = 1 Query: 52 TVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQ--EVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 ++EQ+ +YEDYLDSQ++ TD YYL+DE LARQLVELGYRGSG+TL+REEFEARKKA R+R +QK +APK L+S+ KDL+ PFL AL NREELVRNGKLTSIIF+RD KGQ EVSGYID+AHRL++ NFEPYF+R+KKLMP+PTDLSYYNWET TSTS STPNFQVIAD EAGLLFKNKRDRKV+NVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRKS Sbjct: 20 SLEQFMTYEDYLDSQISSTDKYYLEDESLARQLVELGYRGSGETLKREEFEARKKAERDRHSQKKSAPKMLASASKDLNGFPFLQALANREELVRNGKLTSIIFIRDKTNKGQGQEVSGYIDFAHRLKTENFEPYFDRKKKLMPKPTDLSYYNWETHTSTSNSTPNFQVIADNEAGLLFKNKRDRKVINVDPKANPGDNSTRTEIQTDEYLQVVIYDHMTRRKS 243
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: H3G868_PHYRM (Cilia- and flagella-associated protein 299 n=24 Tax=Oomycota TaxID=4762 RepID=H3G868_PHYRM) HSP 1 Score: 340 bits (872), Expect = 4.600e-116 Identity = 168/226 (74.34%), Postives = 204/226 (90.27%), Query Frame = 1 Query: 40 HVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 + ++++Q+ +YEDYLDSQ++ETD++YL+DE+LARQLVELGYRGSG+TL+R++FEARK+A RER+ QKT+APK L+S+GKDLS+ PFL AL +RE+LVRNGKLT IIF+RD N KGQE+SGYIDYA RL++ FEPYFER+KKL+P+ +DLSYYNWETQTSTS STPNFQVIAD E GLLFKNKRDRKVVNVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRK+ Sbjct: 12 YASESLDQFATYEDYLDSQLSETDLFYLEDEELARQLVELGYRGSGETLRRDDFEARKRAERERNAQKTSAPKPLASAGKDLSQYPFLAALASREDLVRNGKLTCIIFIRDKNAKGQEISGYIDYALRLKNEPFEPYFERKKKLLPKSSDLSYYNWETQTSTSNSTPNFQVIADSETGLLFKNKRDRKVVNVDPKANPGDNSTRTEIKTKEYLQVVIYDHMTRRKT 237
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A812J512_9DINO (Cilia- and flagella-associated protein 299 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812J512_9DINO) HSP 1 Score: 325 bits (833), Expect = 3.110e-110 Identity = 164/221 (74.21%), Postives = 187/221 (84.62%), Query Frame = 1 Query: 55 VEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 V + +YEDYLDSQ+TE DMYYL DE+LARQLVELGYRG G+ +REEFEA KKA RE+ K +AP+ L+S GKDL+ PFL AL NREELVRNGKLT+IIF+RD N KGQEVSGYID+AHRL++ NFEPYFE K LMPRP+DLSYYNWETQTSTS S+PNFQVIAD E GLLFKNKRDRKV+NVDPKA GDN+TR+EIRT E+ QVV+YDHMTRRK Sbjct: 10 VTSFATYEDYLDSQITELDMYYLDDEELARQLVELGYRGDGEPKKREEFEALKKAEREKHLHKDSAPRPLASLGKDLADKPFLQALANREELVRNGKLTTIIFIRDYNAKGQEVSGYIDFAHRLKTENFEPYFEGTKTLMPRPSDLSYYNWETQTSTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKASAGDNSTRSEIRTHEFAQVVLYDHMTRRKG 230
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A3R7IPN8_9STRA (Cilia- and flagella-associated protein 299 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IPN8_9STRA) HSP 1 Score: 334 bits (856), Expect = 3.180e-109 Identity = 166/226 (73.45%), Postives = 202/226 (89.38%), Query Frame = 1 Query: 40 HVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLTSIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 + ++++Q+ +YEDYLDSQ++ETD++YL+DE+LARQLVELGYRGSG+TL+R++FEARK+A RER+ QKT+APK L+S+GKDLS+ PFL AL +RE+LVRNGKLT IIF+RD N KGQE+SGYIDYA RL++ FE YFER+KKL+P+ +DLSYYNWETQTSTS ST NFQVIAD E GLLFKNKRDRKVVNVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRK+ Sbjct: 329 YASESLDQFATYEDYLDSQLSETDLFYLEDEELARQLVELGYRGSGETLRRDDFEARKRAERERNAQKTSAPKPLASAGKDLSQFPFLAALASREDLVRNGKLTCIIFIRDKNAKGQEISGYIDYALRLKNEPFETYFERKKKLLPKSSDLSYYNWETQTSTSNSTQNFQVIADSETGLLFKNKRDRKVVNVDPKANPGDNSTRTEIKTKEYLQVVIYDHMTRRKT 554
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Match: A0A397FJ49_9STRA (Cilia- and flagella-associated protein 299 n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FJ49_9STRA) HSP 1 Score: 327 bits (839), Expect = 3.760e-109 Identity = 165/237 (69.62%), Postives = 201/237 (84.81%), Query Frame = 1 Query: 49 DTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSKSPFLLALGNREELVRNGKLT--------------SIIFVRDVNCKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 717 +++++Y +YEDYLDSQ++ETD++YL+DE+LARQLVELGYRG+G+TL+RE+F+ARKK R+R+ QKTN PKQL+S+GKD S+ FL AL NREE+VRNGKLT SI+F+RD N KGQEVSGYIDYA RL+S FEPYFER+K+L+P+P+DLSYYNWETQT TS S+PNFQVIAD E GLLFKNKRDRKV+NVDPKA PGDN+TRTEI+T EY QVVIYDHMTRRK+ Sbjct: 130 ESLDKYATYEDYLDSQISETDIFYLEDEELARQLVELGYRGTGETLRREDFDARKKMERDRNAQKTNLPKQLASAGKDFSQLAFLSALANREEMVRNGKLTVKCPLAYLWRSDTHSIVFIRDHNSKGQEVSGYIDYALRLKSEAFEPYFERKKRLLPKPSDLSYYNWETQTCTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKANPGDNSTRTEIKTNEYMQVVIYDHMTRRKN 366 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17080.1 >prot_C-linearis_contig97.17080.1 ID=prot_C-linearis_contig97.17080.1|Name=mRNA_C-linearis_contig97.17080.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=240bp MSGKKDKASAEDLHVMDTVEQYESYEDYLDSQVTETDMYYLQDEDLARQLback to top mRNA from alignment at C-linearis_contig97:252129..255553- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17080.1 ID=mRNA_C-linearis_contig97.17080.1|Name=mRNA_C-linearis_contig97.17080.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3425bp|location=Sequence derived from alignment at C-linearis_contig97:252129..255553- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:252129..255553- >mRNA_C-linearis_contig97.17080.1 ID=mRNA_C-linearis_contig97.17080.1|Name=mRNA_C-linearis_contig97.17080.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1440bp|location=Sequence derived from alignment at C-linearis_contig97:252129..255553- (Chordaria linearis ClinC8C monoicous)back to top |