mRNA_C-linearis_contig97.17076.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17076.1 vs. uniprot
Match: A0A6H5JEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEG7_9PHAE) HSP 1 Score: 838 bits (2165), Expect = 3.100e-249 Identity = 1216/2871 (42.35%), Postives = 1375/2871 (47.89%), Query Frame = 2 Query: 107 MPTSPSNGGTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXTRKSFASKNLNALTKAPAVQRGSDRAGEVVRPAYGAGGRLLVLGSKNRDAGGGGGLSTPVPFNTSSLRRENKGQDISVPLVPSGGVGWGANKVTPPAPAAEDPAAAPTPRDRDDRYPAPLAGGG-------------------GGSMTSRWSKNEGGGRPDPRSYPPPRAPSGRPHFRQDGRSDLLGRG-------RDGSPAGREDGVGMGMGSGGFAGPGRPXXXXXXXXXXGMQGHRLRESDFPLEMGGGVPRSGQDKTPPLRPRGGSXXXXXXXXXXXXXXXXXERPP--SVSDGAREDQVGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHSMAPSSVPRDHQHHQQNTPSPLGGGRSGPPPGAGDDGEHYGH-GPPSIASRMGGRGW-PSGSRAGGYGGGXXXXMANXXXXXXXXXXXXXSSGYGSNHYNGDRERDFRGNTFGGAGGRVGXXXXXXXXRXWXXXXXXXXXXXXXPPRERERELDWEHRXXXXXXXXXEWDRGPGR--GGXXXXRDWGERERDTYERRGGGFXXXXXXXXXXSLSMTGMGSSADPHSSLAARTSRRPLER-QPKRTEKPFPSPAAAAXXSSPXXXXXXXXXYAXXXXAAG---NDSKPLGSEAARKKHAETVAEEARAFAERERRLAEKRQDEVEKGVALRARMELERLRAEKAKDKHTAKAAADAGTCNDRSAAEQXXXXXXXXXXXXXTPTKGSRAYEPDEYGRDDPYRRQEDVERERAAQQAAAAALSPAIRPMPSMDRSNTAWALGG----PPPPKARPPPKAVKAVLSRGQEEAVEAGTGARVIQKRQVPPAPVVKVALGATAAAATAAERGAEPSPGVKAKDLHGKGR-AEPAQPLLSGNGNPGPGFHPTKGXXXXXXXXXXXXXXXXXSSSCSSPSVSLQWLTPRRDGADGGVGDPPSRSQRGG-----GGDGGVDPSFAQNSAAPAAHGGRSFSSLFSGPGQQXXXXXXXXXXXXXXVAGAGTGPSLPEGQGQXQGHVVGGGDWPEAGRGPPAP--REHKQIFDHKTGKMRDVEDSDKSRALSDRPRAPQDSHARADGRTPTPQHXXXXXXXXXXXXXXXXPRLLHADXXXXXXXXXXXXXXXXXXQTSGYSDPNPPLAAAESAPGAAGPSD-------------ARDGSGASSQDGRLGGR------------------GWDQHQHRREFSGGRDRGGDRGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDKVWERGVQQPPAPPRAGAADHGNGRXXXXXXXXXXGEHXXAPSSRRRASPLDGDGPSTPGSXXXXXXXXXXXXXXXXXXXXXXXX----VRVAHRSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGPSLSGRSEXXXXXXXXXXXXXXXGAGAV-VDDREAIRARDTRERDLAVQQRRNM--DLNKAKAKGKASKLNDAREANXXXXXXXXXREGEGQDRKETVKVSIYHXXXXXXXXXXXXXXXXXXXXXXXXXXERPPRTNGALYRHATA----GKIFGSLEHANYVNADIPEGAPDPLQARWDAMPEEGS--VEHESPSARPSGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNPGDSGGKDRHSKGTAGGG-----KEKSRAPGRETKEQQRAQQARVSAKKEARDFRDRSDREKGRAGKVTATXXXXXXXXXXXXXXXXXXXXXERASPSGACGKADASKXXXXXXXXXXVERARDKELAIEAKAKGQDARAKEEREKLKEARKERXXXXXGXXXXXXXXXXXXXXXTTIGADGNSFIVAGSGGXXXXXXXGDKIF-------TPGRVVVDKDDHLG--INTAEFDTXXXXXXXSRLTLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAAHLAARKAVQEAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKADQLRRSEPE-TARGKTSASTAGAP-PAAQQASPSTTGSAPVASVREWVNLGAPAAVTAVSTAAATTAQGATPASSVAPPAVYGDDPTSKGRGVFAAVPLASPVARVAXXXXXXXXXXXXXXXXXXXSPANTAASSLSMSLSLSPVFQFGNVGINDDGEWSDAQKSADVVLVGARQQSLGGPSEGTGGAGSAERSATPAVSPSTK----AGLSNGEREASSVKAVVSAAGAPPVSSANKPPSIDTSTSGQATP-----MSPVVNAVDPTPARSIDANLPSRQQQFQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIPRSSSIGHSPAAAKGPLSSPSLAGSIPAPYVHASWKPLPVGMASTALSSGSNGNHGGSGERA------------APDRGARDS-GAGG----------------------------GVRGQQRGGFGPNSAP---GAPGWNPTSAANPIQNGNGRIVGMLGANGGGSSVGGRLRTAPEAFGLAACPSRTGPPAGYGGLAPRPPMMVQGGSGSHEGGPGLQHGRGSESDKGAMLATSLAGG---SPFGGFVVGYNSPGARQPLRPPGG--------------GLGGAAMAGVGGEVSPPLAHQLRQSQQALSPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------------TWQQPASQYAGASITTGVAGTA---PPAAAELGSSGLAPEAAPFIPAAGMGAGSPAMWG-GGPQPRQQAAVVGGAPPNSTPTN---PMMLNQQTGQGQGMNFGA 8122
MPTSP +G XXXXXXXXXXX ++KSFASKNLNALTKAPAVQRGSDRAGEVVRPA+GAGGRLLVLG+KNRDAGG GGLSTPVP NT SLRRENKGQDISVPLVPSGG+GWGA KVT PAP +PA P RDDR P+AGGG G + +SRW N+ GR RDGSPAGRE+G MG+GG+ G GR GMQGH LRESDFPLEMGGG R+ +K P LRPRGG+ + PP S S G+RE Q + SH+MAPSS PRD PSPLGGGR G D G+H+GH GPPS+ SR+ GRG P GSR GYGG A XXXXXX R + G GG G R W PP RERELDWEHR XXXXXXX GG R+WGERE RG G S SMTGM +S DP+SSL R SRRPLE QP +P PS AA XX XXXXXXXXX XXXX A +++K SE RK HAE VAEEA+AFAERERRLAEK DEVEKGVALRAR ELERLRAEK K K T + + QXXXX T R YEPDEYGRDDPYR DVERERAAQQAAAAALSPA PM S DRS +AWAL G KAR KAVKAVL RG+EEAVEAGTGARVIQKRQVPPA VVKVA A AA SP VK H K R AEP++ LLSG G G S S SVSLQWLTPR +G G+ SRSQRGG GD P+ +A G RSFSSLF+G GQQ AG + EG+G+ GH DWPEAGRGP REHKQIFDHKTGKMRDVEDSDK RA SDRPR PQD AR DGRTPT Q XXXXXXXX PRLL + + G PP + ++ G G +D A QD R GG GWDQ RREFSGGR RG RG XXXXXXXX +KVWERGVQQP A G G +H A SSRRRASPLD P TP S XXXXXXXXXXXXXXXXXXXXXX +R+AHR XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX S G S XXXXXXXXXXXXXXX A A ++ REAIRARD RERDLAV+QR++M DLN A A A+ + ++ E + ++ + H ERPPRT+GALYR+ + G G E+ YVNADIPEGAPDPLQARW+AM EE XXXXXXXXXX TNPG SGGKDRHS G AGGG + + +A + Q + Q A +S+ R+ + KG+ G V++ G KA DKE A A K Q+ A+++ XXXXX XXXXXXXXXXXX G + + + G+ G G TPGRVVVDKD HLG +N +EFDT SR +Q XXXXXXXX XXXXXXXXXXXXXX A KA E K XXXXXXXXXXXXXXXXXX ++Q RRS+ E ++R K +AST P PAA TT SAPVASV+ N +P V+TA A + + P+ G ++ G F A P +SP A + SPA T LSP QFG+VG ++ WS K+ LV G +E GG ERS PA P T A NGE SS + S + P + G +P P V V+PT R + N PS+QQQ +S+S G P A+G LSSPSLAGSIPAP+ ASWKPLPVG+AS LS+G+ G+G AP RG + GAGG G G QRG FGPNSAP GA GWN S NP+QNG +VGMLGANGGG+SVGGRLR+APEAFGL A PS+ P AGYG LA RPP MV+G +G +G PG H R ++ + LATS+A G PFGGFV+G++SPGARQP PPGG GGA M GV G XXXXXXXXXXXXXXXXX WQQPASQ+ S+ A A P + AE G+SGLA EAAPFIPA MG GSPAMWG GPQ +QQ VG P + N P ML T GQG++FGA
Sbjct: 1 MPTSPGDGVVRTTTGAPGPSPSDXXXXXXXXXXXGAGTTSKKSFASKNLNALTKAPAVQRGSDRAGEVVRPAFGAGGRLLVLGTKNRDAGGAGGLSTPVPVNTPSLRRENKGQDISVPLVPSGGIGWGAGKVTAPAPTVAEPA--PAGPARDDRSAPPMAGGGRXXXXXXXXXGYGHDNRSAGPTRSSRWPNNDXXXXXXXXXXXXXXXXXXXXXXXXXGRXXXXXXXXXXXXXXRDGSPAGRENG----MGAGGYGGQGR--LGGGPPGGGGMQGHYLRESDFPLEMGGGASRA--EKAPQLRPRGGTGPDTSQGKG--------DPPPFASPSGGSREGQQTRAAAAVGRAGGNGNNSPSPS------------SHAMAPSSGPRD----LDGMPSPLGGGRYG------DGGDHFGHHGPPSVPSRLSGRGASPFGSRLAGYGG-TANESARGDYTRGGXXXXXXXXXXXXXXXXXXGGRGWSGGWDGGRG------------REWDRGRGQP------PPHPRERELDWEHRRKXXXXXXXXXXXXXXXXGGGGRSSREWGEREN-----RGAG------RGSFRSPSMTGM-ASPDPYSSLG-RMSRRPLEGGQPSGVARPPPSSPAAXXXXXXXXXXXXXXXXXXXXXTATAVVSETKRPMSEEERKNHAEAVAEEAKAFAERERRLAEK-SDEVEKGVALRARRELERLRAEKDKGKEXXXXXXXXXTDGQETGSRQXXXXGN---------TXEGRGYEPDEYGRDDPYRXXXDVERERAAQQAAAAALSPAFGPMSSADRSASAWALAGGXXXXXXXKARL--KAVKAVLGRGEEEAVEAGTGARVIQKRQVPPAAVVKVA--AEEAAXXXXXXXXSESPAVKPAP-HTKSRTAEPSKLLLSGKG----------GTNLHAAAAAGGRGKAPPSGGNSGSSVSLQWLTPRHEGE---AGEAHSRSQRGGQAEHNSGDPSAPPAHCTPPCPASAQGARSFSSLFAGAGQQQKQKHQHTGAQRPGDAGVEG--QMWEGEGRESGHDH-DRDWPEAGRGPXXXXSREHKQIFDHKTGKMRDVEDSDKLRAPSDRPRGPQD--ARLDGRTPTQQXXXXXXXXX--------PRLLQSSGNGNAKSGQHHQSPRQQPSSRGGPS-GPPSDSPQT--GGRGANDVAVAAESPEMRKVAGQAQSLQQQDSRFGGHLPSSATAAAAPREHEGGSGWDQ---RREFSGGRGRGAGRGGRGGWDEREXXXXXXXXGGTGRGGRGGEGVFVRDGKPGD---NKVWERGVQQPVV------ASGGRGGVNREEAWDRQQKH--ATSSRRRASPLDN--PPTPDSSPXXXXXXXXXXXXXXXXXXXXXXXXXGLRIAHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGTTTDTPLXXXXXXXXXXXXXQQPSSNHQDSLVA------SAGTSXXXXXXXXXXXXXXXXXXXXXAAAAAALESREAIRARDERERDLAVRQRKSMKMDLNAASAPRDAAGVKQHQQRPKRDGHDKKDAEKARRAERDRTRREKRHDDTERQRNRSEAGGRARREARRKESSERPPRTSGALYRYGSPDLAPGGGSGVSEYVVYVNADIPEGAPDPLQARWNAMTEESDRXXXXXXXXXXXXXXXXXXXXXXXXXYSKKDPREKHHTHESAPRNTRDRDVRASFPTNPGASGGKDRHSNGAAGGGGTAVKERRDQARNEVRRNQSQQQSAPISSGP-----REGGEGVKGKEGLVSSARADGAGRNARARDFPDRGGGEHGDREKGRGRKATG-----------------DKEGAAAALMKKQEL-----------AKEQXXXXXXXXXXXXXXXXXXXKMKRGGGEEATAALAGGASGYTGSGVSGXXXXXXXXXXXTPGRVVVDKDCHLGMNVNMSEFDTAEFEVVKSRREVQKERKEXXXXXXXXAXXXXXXXXXXXXXXXXQAARGQIKAQLELNKAETRKATEVKAKXXXXXXXXXXXXXXXXXXVASM--SEQDRRSDQEASSREKANASTHEPPAPAA------TTSSAPVASVKRQDNGKSP-----VTTAXXXXXXXXXSAPTSSVPSRAGHS-NARPDGAFPAEPASSPKATQSSKSPVVLPPL---------SPAKTTRP-------LSPAIQFGSVGADNGAGWSATPKNEGKTLV----DCAGAYAESGGGVADGERSGLPAFGPETTPEVCAPSRNGEAGPSSGAS----------KSRHDAPRPNVPRPGDKSPPLGEGALPEVGVVEPT--REVGLNPPSKQQQPASILSGENDKQGERNGKDETESTHSDDRGGGQEPESDTRASPPTSPPSGVQQPALNPSS--------------------QSTSHGRPPPVAEGLLSSPSLAGSIPAPHTQASWKPLPVGLASAVLSTGNGVAAVGAGAGGYNNKPHNKNSEWAPGRGGYNGFGAGGTGYGEQQGPGNFGQNNVSTAFGATHPVYGFGGPQRGNFGPNSAPAALGAAGWNTASVFNPLQNGG--VVGMLGANGGGNSVGGRLRSAPEAFGLGAGPSQVVPRAGYGRLAQRPPAMVRGANGGRDGSPGQPHNRANDPGQTVRLATSVAAGMAGGPFGGFVLGHHSPGARQPPIPPGGIQAWTGGFPQAGGGSPGGARMTGVNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPFYGSFAGGVTPPGSTGLMVPSTQPTMQVARWQQPASQHIVTSVVATAASAASNPPLSMAEGGNSGLAAEAAPFIPAGAMGVGSPAMWGMAGPQTQQQPTGVGAPSPGAASVNAINPTMLTLPTMGGQGVSFGA 2632
BLAST of mRNA_C-linearis_contig97.17076.1 vs. uniprot
Match: D8LL01_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL01_ECTSI) HSP 1 Score: 555 bits (1430), Expect = 1.920e-157 Identity = 1075/2351 (45.73%), Postives = 1172/2351 (49.85%), Query Frame = 2 Query: 107 MPTSPSNGGTSAXXXXXXXXXXXXXXXXXXXXXXXXXXXTRKSFASKNLNALTKAPAVQRGSDRAGEVVRPAYGAGGRLLVLGSKNRDAGGGGGLSTPVPFNTSSLRRENKGQDISVPLVPSGGVGWGANKVTPPAPAAEDPAAAPTPRDRDDRYPAPLAGGGGGSMTSRWSKNEGGG---------------------------RPDPRSYPPPRAPSGRPHFRQDGRSDLLGRGRDGSPAGREDGVGMGMGSGGFAGPGRPXXXXXXXXXXGMQGHRLRESDFPLEMGGGVPRSGQDKTPPLRPRGGSXXXXXXXXXXXXXXXXXERPPSVSDGAREDQVGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHS-----MAPSSVPRDHQHHQQNTPSPLGGGRSGPPPGAGDDGEHYGH-GPPSIASRMGGRGWPS-GSRAGGYGGGXXXXMANXXXXXXXXXXXXXSSGYGSNHYNGDRERDFRGNTFGGAGGRVGXXXXXXXXRXWXXXXXXXXXXXXXPPRERERELDWEHRXXXXXXXXXEWDRGPGRGGXXXX--RDWGERERDTYERRGGGFXXXXXXXXXXSLSMTGMGSSADPHSSLAARTSRRPLER-QPKRTEKPFPSPAAAAXXSSPXXXXXXXXXYAXXXXAAGNDSKPLGSEAARKKHAETVAEEARAFAERERRLAE--KRQDEVEKGVALRARMELERLRAEKAKDKHTAKAAADAGTCNDRSAAEQXXXXXXXXXXXXXTPTKGSRAYEPDEYGRDDPYRRQEDVERERAAQQAAAAALSPAIRPMPSMDRSNTAWALGGPPPP-----KARPPPKAVKAVLSRGQEEAVEAGTGARVIQKRQVPPAPVVKVALGATAAAATAAERGAEPSPGVKAKDLHGKGR-AEPAQPLLSGNGNPGPGFHPTKGXXXXXXXXXXXXXXXXXSSSCSSPSVSLQWLTPRRDGADGGVGDPPSRSQRGG-----GGDGGVDPSFAQNSAAPAAHGGRSFSSLFSGPGQQXXXXXXXXXXXXXXVAGAGTGPSLPEGQGQXQGHVVGG-------------GDWPEAGRGPPAPREHKQIFDHKTGKMRDVEDSDKSRALSDRPRAPQDSHARADGRTPTPQHXXXXXXXXXXXXXXXXPR-LLHADXXXXXXXXXXXXXXXXXXQTSGYSDPNPPLAAAESAPGAAGPSDARDGSGASS----QDGRLGG----------------RGWDQHQHRREFSGGRDRGGDRGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDKVWERGVQQPPAPPRAGAADHGNGRXXXXXXXXXXGEHXXAPSSRRRASPLDGDGPSTPGSXXXXXXXXXXXXXXXXXXXXXXXX--VRVAHRSPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRGPSLSGRSEXXXXXXXXXXXXXXXGAGAVVDDREAIRARDTRERDLAVQQRRNM--DLNKAKAKGKASKLNDAREANXXXXXXXXXREGEGQDRKETVKVSIYHXXXXXXXXXXXXXXXXXXXXXXXXXXERPPRTNGALYRHATA----GKIFGSLEHANYVNADIPEGAPDPLQARWDAMPEEGS--VEHESPSARPSGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNPGDSGGKDRHSKGTAGGGKEKSR--------------------------APGRETKE----QQRAQQARVSAKKEARDFRDRS-----DREKGRAGKVTATXXXXXXXXXXXXXXXXXXXXXERASPSGACGKADASKXXXXXXXXXXVERARDKELAIEAKAKGQDARAKEEREKLKEARKERXXXXXGXXXXXXXXXXXXXXXTTIGADGNSFIVAGSGGXXXXXXXGDKIFTPGRVVVDKDDHLG--INTAEFDTXXXXXXXSRLTLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKAAHLAARKAVQEAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKADQLRRSEPE-TARGKTSASTAGAPPAAQQASPSTTGSAPVASVREWVNLGAPAAVTAVSTAAATTAQGATPASSVAPPAVYGDDPTSKGRGVFAAVPLASPVARVAXXXXXXXXXXXXXXXXXXXSPANTAASSLSMSLSLSPVFQFGNVGINDDGEWSDAQKSADVVLVGARQQSLGGPSEGTGGAGSAERSATPAVSPSTK----AGLSNGEREASSVKAVVSAAGAP----PVSSANKPPSIDTSTSGQATPMSPVVNAVDPTPARSIDANLPSRQQQ 6739
MPTSP +G S XXXXXXXXXXXXXXXXXXXX T+KSFASKNLNALTKAPAVQRGSDRAGEVVRPAYGAGGRLLVLGSKNRDAGG GGLSTPVP NT SLRRENKGQDISVPLVPSGGVGWGA KVT PAPA + AP RDD R DPRSYPPPRAPSGRPHF Q G GSPAGRE+G MG+GG+ G GR XXXXXXXX GMQGH LRESDFPLEMGGG R+ +K+P LRPRGG+ P S G + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX S S MAPSS PRDH PSPLGGGR G D G+HYGH GPPS+ SR+ GRG S GSR GYGG A XXXXXX R + G GG G R W XX PP RERELDWEHR XXXXXXX P RGG R+WGER+ RG G S SMTGM +S DP+SSL R SRRPLE QP +P PS AAAXX XXXXXXXXX XXXX ++ DEVEK VALRARMEL A + T + ++Q T+ R YEPDEYGRDDPYRRQEDVERERAAQQAAAAALSPA+ PM S DRS +AWALG KARP KAVKAVL RG+EEAVEAGTGARVIQKRQVPP AE+ A SP VK H K R AEP++ LLSG G G S S SVSLQWLTPRR+G G+ RSQRGG GGD P +A G RSFSSLF+G GQ XXXXXXX AG +G + GG REHKQIFDHKTGKMRDVEDSDK RA SDRPR PQD AR DGRTPT Q XXXXXXXXXXX H +G N AAES + R+ +G + QD R GG RGWDQ RREFSGGR RG RG XXXXXXX XX KVWERGVQQP A A G G +H APSSRRRASPLD P TP S XXXXXXXXXXXXXXXXXXXXXX VR+AHR XXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXX ++ REAIRARD RERDLAV+QR++M DLN A A A+ + ++ E + ++ V+ H ERPPRT+GALYR+ + G G EH YVNADIPEGAPDPLQARW+AM EE XXXXXXXXXX TNPG SGGKDRHS G G + KE RA A +A+ ARDF DR DREKGR K T XXXXXXXXXXXXXXXXX XXXXXXXXXX A G T G SGGXXXXXXX TPGRVVVDKDDHLG +N +EFDT SR +Q XXXXXXXXXXXXXXXXXXXXXXXXX KA E K XXXXXXXXXXXXXXXXXXXXXXXXXX ++Q+RRS+ E ++R K +AST G P A +TTGSAPVASV++ N +P TAV+ AAA AQ + PASSV A + + ++ G A P +SP + SPA T LSP QFG+VG +DD WS K+ LV S G +E G ERS A P T A NGE SS A S AP P S PP + + P V V+PT R + N PS+QQQ
Sbjct: 1 MPTSPGDGVVSTTTGAPGXXXXXXXXXXXXXXXXXXXXTTKKSFASKNLNALTKAPAVQRGSDRAGEVVRPAYGAGGRLLVLGSKNRDAGGAGGLSTPVPVNTPSLRRENKGQDISVPLVPSGGVGWGAGKVTAPAPAVAE--LAPAGPARDDSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSDPRSYPPPRAPSGRPHFGQRGXXXXXXX-XXGSPAGRENG----MGAGGYVGQGRSXXXXXXXX--GMQGHYLRESDFPLEMGGGASRA--EKSPQLRPRGGTG-------------------PDTSQGKGDPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSPSPSSFAMAPSSGPRDHD----GMPSPLGGGRYG------DGGDHYGHHGPPSVPSRLSGRGGSSFGSRLAGYGG-TANESARGDYTRGGXXXXXXXXXXXXXXXXXXGGRGWSGGWDGGRG------------REWDRGXXQP------PPHPRERELDWEHRRKXXXXXXXXXXXXPDRGGGGGRSSREWGERDN-----RGAG------RGSFNSPSMTGM-ASPDPYSSLG-RMSRRPLEGGQPNGVARPPPSSPAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKSDEVEKSVALRARMELXXXXXXXXXXXXXXXXNARSRTDGQEAGSQQQGGADD---------TEEGRGYEPDEYGRDDPYRRQEDVERERAAQQAAAAALSPALGPMSSADRSASAWALGXXXXXXXXXXKARP--KAVKAVLGRGEEEAVEAGTGARVIQKRQVPPXXXXXXXXXXXXX--XXAEKVASESPAVKPAP-HTKSRTAEPSKLLLSGKG----------GANLHAAAAAGGRGKAPSSGGDSGSSVSLQWLTPRREGE---AGEAHLRSQRGGQAEHKGGDPSAPPPPRTPPCPASAQGARSFSSLFAGAGQXXXXXXXXAGAQRPGDAGV-------------EGQMWGGEXXXXXXXXXXXXXXXXXXXXXXXXSREHKQIFDHKTGKMRDVEDSDKLRAPSDRPRGPQD--ARLDGRTPTQQXXXXXXXXXXXXGNGNAKSGQHHQSPRQQVSSRGGPSGPPSDSPRTGGRGANDVAVAAESP-------ETREVAGQAQSLQQQDSRFGGHRSSCAAAAPREHEGGRGWDQ---RREFSGGRGRGVGRGGRGGWDEREGXXXXXXXGGWGRXXRGGEGVFVRDGNPGDK---KVWERGVQQPVA------ASGGRGGVNREEAWDRQPKH--APSSRRRASPLDN--PPTPDSSPXXXXXXXXXXXXXXXXXXXXXXXGVRIAHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGTTTNAPLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXALESREAIRARDERERDLAVRQRKSMKIDLNAASAPRDAAGVKQHQQRPKRDDHDKKDAEKARRAERDRVRREKRHDDTERQRNRSEAGVRARREARRKESSERPPRTSGALYRYGSPDVAPGGGSGVSEHVVYVNADIPEGAPDPLQARWNAMAEESDRXXXXXXXXXXXXXXXXXXXXXXXXXYSKKDPREKHHTHESAPRNTRDRDVIASFPTNPGASGGKDRHSNGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGVKGKEGLVSSARADGAGRNAR--ARDFPDRGGGEHGDREKGRGRKATGGKEGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGASG---------------------------------------YTGSGV---------SGGXXXXXXXXXXXXTPGRVVVDKDDHLGMNVNMSEFDTAEFEVVKSRREVQKERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGQIKAQLELNKAETXXXXXXXXXXXXXXXXXXXXXXXXXXIASM---SEQVRRSDQEASSREKANASTHGPP-----AQAATTGSAPVASVKKQDNGKSPEVTTAVAAAAA--AQPSAPASSVPSRAGHSN---ARPDGASPAEPASSPKMTQSSKPAVVLPPL---------SPAKTTRP-------LSPAIQFGSVGADDDAGWSATPKNKGKALV----DSAGACAESGGRVADGERSGPRAFGPETTPEVCAPSRNGEAGPSS-SASKSRHDAPRPNVPRPSDKSPPLGEGAL--------PEVGVVEPT--REVGLNPPSKQQQ 2111
BLAST of mRNA_C-linearis_contig97.17076.1 vs. uniprot
Match: A0A7S3NKR7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKR7_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.480e-10 Identity = 52/103 (50.49%), Postives = 63/103 (61.17%), Query Frame = 2 Query: 227 RKSFASKNLNALTKAPAVQRGSDRAGEVVRPA--YGAGGRLLVLGSKNRDAGGGGGLSTPVPFNTSSLRRENKGQDISVPLVPSGGVGWGANKVTPPAPAAED 529
RK+F S+NLNALT+AP +VVR YG+GGRLLVLG + + P P NT SLRREN+GQD+SV LVP GG W A+ TPP P E+
Sbjct: 20 RKNFTSRNLNALTRAPKE--------DVVRREGRYGSGGRLLVLGKAQGEKSTPS-VVAPTPLNTPSLRRENRGQDLSVKLVPGGG-SW-ASPQTPPKPLEEE 111
BLAST of mRNA_C-linearis_contig97.17076.1 vs. uniprot
Match: A0A7R9Y8X9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8X9_9STRA) HSP 1 Score: 60.8 bits (146), Expect = 5.040e-5 Identity = 45/106 (42.45%), Postives = 56/106 (52.83%), Query Frame = 2 Query: 230 KSFASKNLNALTKAPAVQRGSDRAGEVVRPAYGAGGRLLVLGSKNRDAGGGGGLST-PVPFNTSSLRRENKGQDISVPLVPSGGVGWGANKV-TPPAPAAEDPAAA 541
+ F NLN++ + P + R +GGRL VLGS GG+S PVP NT SL++EN+GQD V LVPSGG GWG+ PP A PA A
Sbjct: 70 QKFKKSNLNSVVQGP-PRHAETRV---------SGGRLQVLGS--------GGISRGPVPLNTPSLKKENRGQDAFVSLVPSGGGGWGSKADGAPPVAGAAGPAGA 157 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17076.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17076.1 >prot_C-linearis_contig97.17076.1 ID=prot_C-linearis_contig97.17076.1|Name=mRNA_C-linearis_contig97.17076.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=2911bp MPTSPSNGGTSATAGGAAAGATDSSSAASGSGGTTSTSSTRKSFASKNLNback to top mRNA from alignment at C-linearis_contig97:214944..232623+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17076.1 ID=mRNA_C-linearis_contig97.17076.1|Name=mRNA_C-linearis_contig97.17076.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=17680bp|location=Sequence derived from alignment at C-linearis_contig97:214944..232623+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:214944..232623+ >mRNA_C-linearis_contig97.17076.1 ID=mRNA_C-linearis_contig97.17076.1|Name=mRNA_C-linearis_contig97.17076.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=17466bp|location=Sequence derived from alignment at C-linearis_contig97:214944..232623+ (Chordaria linearis ClinC8C monoicous)back to top |