Homology
BLAST of mRNA_C-linearis_contig97.17072.1 vs. uniprot
Match:
D8LKZ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKZ8_ECTSI)
HSP 1 Score: 243 bits (621), Expect = 1.480e-74
Identity = 208/355 (58.59%), Postives = 233/355 (65.63%), Query Frame = 2
Query: 92 GAAISVHYKDRMSEITLNLAGSVAHRDQEVIALALNLQAALNLATPPVGLRLRVAPGTEAVVCPLSVLAACPAYIATTFQAGMSWFPLLEGGDDXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPEPPVQDPLLPPPLGSPLEHDLCFLATGPA--ASPAEGCGRPLTAPPGDRSLGRSRPRPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSGSGSPAWGGSPHGFRCEDTGQQDAAVAXXXXXXXXGRRPSTAPAIGASRRRQRQPSSNLSGSHQRERGGFGERFGRGGDEDV--EMDDIGGGRTQNWPGGGAPSGVMGAAGA----GRGRTGPPSECWV 1132
GA +SV Y D +I LNLA + A +++ LAL LQAALNL+TPPVGLRLRVAPG +AV+CPLS + ACP+YIAT +Q GMSWFPLLEGG D + P PP DPLLPPPLGSPL+H+L FLATG ASP+EGCGRPLTAPPGDR+ G +RP PGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHS SGSPAWG SPHGFRCE+T A A RRP+TAPA+ +RQPSSNLSGS E G FGERFGRGG +V E + + P GG G A G G GP ECW
Sbjct: 6 GAVVSVQYGDCAWDIKLNLAANTACLERDTATLALELQAALNLSTPPVGLRLRVAPGAQAVICPLSAVIACPSYIATAYQ-GMSWFPLLEGGGDDHQEAPPNAPPAAPQT-----------QLPAPPSDDPLLPPPLGSPLDHELSFLATGGGFTASPSEGCGRPLTAPPGDRTRGMTRPHPGRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSHSGSPAWG-SPHGFRCEETTTTTAEDAGA-------RRPATAPAL------RRQPSSNLSGSRN-ENGVFGERFGRGGSVEVNEETGGVAAAHHRPMPDGGGLGGDGRAVGGDVDWGWCGAGPTRECWA 333
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17072.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.48e-74 / Id = 58.59 Sequence D8LKZ8_ECTSI
Match Name E-value Identity Description
D8LKZ8_ECTSI 1.480e-74 58.59 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Ec32 ortholog description hypothetical protein Ec32 ortholog Ec-11_006150.1 Exons 3 Model size 1135 Cds size 1056 Stop 1 Start 1
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930830.582391-CDS-C-linearis_contig97:201635..202438 1622930830.582391-CDS-C-linearis_contig97:201635..202438 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 201636..202438 - 1690881271.83256-CDS-C-linearis_contig97:201635..202438 1690881271.83256-CDS-C-linearis_contig97:201635..202438 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 201636..202438 - 1622930830.5995233-CDS-C-linearis_contig97:202937..203190 1622930830.5995233-CDS-C-linearis_contig97:202937..203190 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 202938..203190 - 1690881271.8445501-CDS-C-linearis_contig97:202937..203190 1690881271.8445501-CDS-C-linearis_contig97:202937..203190 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 202938..203190 -
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930830.6193757-UTR-C-linearis_contig97:203190..203228 1622930830.6193757-UTR-C-linearis_contig97:203190..203228 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 203191..203228 - 1690881271.8551548-UTR-C-linearis_contig97:203190..203228 1690881271.8551548-UTR-C-linearis_contig97:203190..203228 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 203191..203228 - 1622930830.6360397-UTR-C-linearis_contig97:203785..203826 1622930830.6360397-UTR-C-linearis_contig97:203785..203826 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 203786..203826 - 1690881271.8655055-UTR-C-linearis_contig97:203785..203826 1690881271.8655055-UTR-C-linearis_contig97:203785..203826 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 203786..203826 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17072.1
>prot_C-linearis_contig97.17072.1 ID=prot_C-linearis_contig97.17072.1|Name=mRNA_C-linearis_contig97.17072.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=352bp
MDFEGAAISVHYKDRMSEITLNLAGSVAHRDQEVIALALNLQAALNLATP back to top mRNA from alignment at C-linearis_contig97:201636..203826-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17072.1 ID=mRNA_C-linearis_contig97.17072.1|Name=mRNA_C-linearis_contig97.17072.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2191bp|location=Sequence derived from alignment at C-linearis_contig97:201636..203826- (Chordaria linearis ClinC8C monoicous)TGATGTTCTGCACCCTGAGAGCTCAGCACGGGTGTGATCAG GTATGGATT
GAGTGATTGTCGGTGAAGGATGGACTCCTTGGTTCCTATCGGGTACGCTG
TCATTGTCGTCCCTCGTAGGACCTCCCTCCCGATGCGTACTTGATGCGGA
GAACCTCCTTTCTTTGTGCGTAGGATCCTCGATCCTTGTCCCAGAAGCGG
CTGTACGTAGACGCTTGGATCCGCTGAGTGACAGCGTCATGTTGCCGCCA
ATATCGTATGGATCTCTGCATCTTTGTTCACAAAGTGGCCATGAAAGCCA
TGCCCATCTCCCGAAACCTTGTTTTGAAACAATTGCGGCGCTATGTGGCG
CGATCTTGGAGAGATAACTTGCCGCGTTTGCTTCCTCGTACAATATGCAC
ATATCACATGTACACGGAGAGTTGCGTGCGTGCTTTCAAGGCAGAAAACA
TAGATACGGCTGTGGATCGAATCTAATTTGTCACTGCTTCTCAGAAATTT
CAGGGTAAGTGCCGACGACACGTCGATGCGGGGGCTTTTGAAAATTAAAT
TAAAAGAGTCACGTCGACACATTCCCAATGTATGATGAACGCATGCAGGC
GCCACCCTGAAGCACCGCACACCGCATCCGAGAGCC ATGGATTTCGAGGG
GGCTGCCATCTCGGTCCACTACAAGGATCGCATGTCGGAAATTACGCTCA
ACTTGGCTGGGAGCGTTGCCCATCGTGACCAGGAAGTGATTGCGTTAGCT
CTCAACCTGCAGGCGGCTCTCAACCTGGCTACACCCCCAGTAGGATTGAG
GCTCCGGGTGGCGCCAGGCACGGAAGCGGTGGTGTGCCCGCTCAGCGTGC
TTGCCGCATGTCCTGCGTACATCGCCACTACTTTTCAAG GTGGGTGTGGG
TGTTAGCTGGCTCTTTCGGGTTCATACCTCATTGAGTTTGCAGACAAGAA
GTTCGTGCATGGATGAGCGAATGGACGTTCATGCTTTCCCCTGTTCGTTG
GCCTGCTGGTCTTGACCGGGGCGCGCCCACCTCTGCCATTTCTTTCCACA
CGCGACGGTTCAAGCGGGACGTGCAATGTAATTTTTGCAGCGCTGAACTG
TAGTCCCTCCCGAGGAAGGCTGGTGTGGTACGTGTGGTGAACACTCTGTC
GCTTCATCACCACAGCAGTACGCATAGTAGTTCGAGGTTGTTTCGTATTC
AAACGTCTGCACTTCGACTGCTGTTTCCCACTGGCAGATCCCTCTGGAGA
TTATCTCAATCGCTTTTCGTCTGCTAATTGTGTTCTTAATCGCTTTTTGT
TGGCATCCACATGCGCGCGCATGCACCGTTGTCCTATGCAGCAACCCAAC
ACGTAGCTATCTATCCCTTTCCCCCCGGATCGAACCAGCAGGCATGTCTT
GGTTCCCTCTACTAGAGGGCGGAGACGACGACGAAGACGACAACGACGAC
ACAGAAAACGACAACACACCAACGGGAGTAGCAGCAGCAGCAGCAGCAGC
AACAGCAACAAGATCCCCAGAACCCCCAGTCCAAGACCCCCTCCTGCCCC
CGCCCCTGGGATCACCGCTAGAGCATGACCTATGCTTCTTGGCCACGGGG
CCCGCCGCGTCCCCTGCCGAGGGGTGCGGCCGCCCACTCACGGCGCCCCC
GGGCGACCGCTCCCTGGGCCGATCGAGACCTCGCCCCGGTAGACGGGAGG
GCCTCGGGCGGCCAGTGTCCGCCACTCCGAGCGACAAGAGCTTCGGGATG
CGGCGGTTCCGCCCGGGAAAGAGCGAGGGCTTCGGCAGGCCCGTCACGGC
GCTCCCGAGCGATCACAGCGGCAGCGGCAGCCCCGCGTGGGGAGGGAGCC
CGCACGGCTTCCGGTGCGAGGACACCGGCCAGCAGGACGCCGCCGTCGCC
GCCGCCGTCGCCGCCGCCGCCGCCGGCCGCCGGCCGTCCACTGCTCCTGC
TATCGGCGCTTCTAGGCGGCGGCAACGGCAACCATCCTCGAACCTTAGTG
GATCGCACCAGCGCGAGAGGGGAGGGTTTGGGGAGCGCTTCGGGCGAGGG
GGCGACGAGGACGTAGAGATGGACGACATTGGTGGAGGTAGGACGCAAAA
TTGGCCCGGCGGCGGCGCACCTAGCGGTGTCATGGGGGCTGCCGGTGCGG
GTCGGGGTAGAACCGGGCCCCCGAGCGAATGTTGGGTATGA back to top Coding sequence (CDS) from alignment at C-linearis_contig97:201636..203826-
>mRNA_C-linearis_contig97.17072.1 ID=mRNA_C-linearis_contig97.17072.1|Name=mRNA_C-linearis_contig97.17072.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2112bp|location=Sequence derived from alignment at C-linearis_contig97:201636..203826- (Chordaria linearis ClinC8C monoicous) back to top