Homology
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match:
A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)
HSP 1 Score: 209 bits (531), Expect = 1.300e-58
Identity = 107/204 (52.45%), Postives = 136/204 (66.67%), Query Frame = -3
Query: 4 SSCRDVVALRFQ*GGLGAESRRSLYVGIGRELVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 612
S R +R + GG RRSLY + E VR+SVA SS+RTY SGWR+W AFR +IGE +L GD A AL+ FVAWC + +GN A TISGKLAAVQY HRV+ LE+P APL+ +L G + H+ GTK R R+PV+W T+L G+ L ++WG GGR+LWLCL LSY +ARS+E+ A+ + H VHC RR DV
Sbjct: 536 SEPRSRALMRVEPGG-----RRSLYRRLSGEYVRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDV 734
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match:
A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)
HSP 1 Score: 122 bits (305), Expect = 2.950e-29
Identity = 64/172 (37.21%), Postives = 102/172 (59.30%), Query Frame = -3
Query: 4 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 519
+V+ SV ++ + Y++ W++W F G G +L L AA I+ L+ F+A + NQ T+ G LAAV++ H++ G E+PTS L+ A KG+ + VG K ++RLP+ W+ + +G S + EGGR++WL LAL+Y LL R+ E+FA + +HP C R +
Sbjct: 1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSL 172
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match:
A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)
HSP 1 Score: 105 bits (261), Expect = 2.500e-23
Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = -3
Query: 4 LIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 441
+IGE +L GD A AL+ F AWC + +G + + L GV + H+ GTK R R+PV+W T+L G+ L ++WG GGR LWL LALSY L+ARS+E+FA+ + H VHC RR DV
Sbjct: 1 MIGESEYLSGDADRAGLEQALLEFAAWCCADKGGRVXS------------------------------LLGVARVHVRAGTKSRNRVPVSWETLLEGQQLTASWGTGGRALWLWLALSYFLVARSDEVFATLSGQCHQVHCLRRSDV 117
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match:
A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)
HSP 1 Score: 102 bits (254), Expect = 8.600e-22
Identity = 62/175 (35.43%), Postives = 94/175 (53.71%), Query Frame = -3
Query: 1 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDA--LVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVA 519
L VA S+ TY++ W+ WV +R + + D +++ A L ++A+ +GN+ TI+GKL AV+Y H+ G+++P RA+K + T+ RMR P++W + G A+ WGEGGR+LWL LA+SY + R EIFA IH RG+VA
Sbjct: 9 LSTVGVAPSTHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHK-RIGVDLPMKHHFF-RAVKAGLARESTLHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGNGKIHKEFGITRGNVA 181
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 4
0 1 Expect = 1.30e-58 / Id = 52.45 Expect = 2.95e-29 / Id = 37.21 Expect = 2.50e-23 / Id = 39.46 Expect = 8.60e-22 / Id = 35.43 Sequence A0A6H5KTP7_9PHAE A0A6H5KDK3_9PHAE A0A6H5K718_9PHAE A0A6H5KDR9_9PHAE back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation Exons 1 Model size 731 Cds size 375 Stop 0 Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930828.2225704-UTR-C-linearis_contig97:4580..4936 1622930828.2225704-UTR-C-linearis_contig97:4580..4936 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 4581..4936 + 1690881270.7628646-UTR-C-linearis_contig97:4580..4936 1690881270.7628646-UTR-C-linearis_contig97:4580..4936 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig97 4581..4936 +
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930828.2436187-CDS-C-linearis_contig97:4936..5311 1622930828.2436187-CDS-C-linearis_contig97:4936..5311 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 4937..5311 + 1690881270.7741785-CDS-C-linearis_contig97:4936..5311 1690881270.7741785-CDS-C-linearis_contig97:4936..5311 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig97 4937..5311 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17061.1
>prot_C-linearis_contig97.17061.1 ID=prot_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=125bp
MNTMQRRLPGRRSGQLPPSPLRTRPRRSTLETRPKTANPTSKFSETTVQL back to top mRNA from alignment at C-linearis_contig97:4581..5311+
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17061.1 ID=mRNA_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=731bp|location=Sequence derived from alignment at C-linearis_contig97:4581..5311+ (Chordaria linearis ClinC8C monoicous)GGCGACGTCGCCGCGTCGTTAGCAGTGCACCGGGTGAATTCCCGAAGCCG
ACGAAGCAAAAATTTCTTCGGATCGAGCCAACAGAAGATAGGACAGAGCC
AGACACAGCCATAACATGCGACCCCCCTCGCCCCACGTCGACGCCAACGT
TTCACCGCGAAGAATTGTCGCCCATGCTACTGGCAACCGCATCCTGGGCT
TGGTACCGACTGCTAGATGTGCTTTCTCTACTCCCTTGAGCGCGCGGTTT
ACCAGAGGGGCACTGGTCGGAATCTCTAAACCCGCCTCGACGCGGTGAAG
GTATTGTACCGCCGCCAACTTCCCCGAAATGGTACCTGCTTGGTTACCCT
GTGACG ATGAACACCATGCAACGAAGGCTACCAGGGCGTCGATCTGGTCA
GCTGCCCCCAAGTCCCCTAAGAACGCGCCCTCGCCGATCAACCCTCGAAA
CGCGACCCAAGACCGCCAACCCGACGAGTAAGTTCTCTGAGACGACAGTG
CAACTGACTGGCGGACAAGTTCGCGTCCAATACCGACATACAGAGATCGA
CGGCTTTCGGCGCCAAGACCTCCTCACTGAAATCGTAACGCCACCACATC
CCGACAACTGCTCGCAAGAACCATCCTCCCATTGCGTCTCCCGATGCATC
AGACCAAAAAGTATACGTGGGGGGGCTGGGGAAAACTCCAAATCAACGGC
GCGGACAATGTTCCCCGGGTGGAGCCGAGGC back to top Coding sequence (CDS) from alignment at C-linearis_contig97:4581..5311+
>mRNA_C-linearis_contig97.17061.1 ID=mRNA_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at C-linearis_contig97:4581..5311+ (Chordaria linearis ClinC8C monoicous) back to top