mRNA_C-linearis_contig97.17061.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE) HSP 1 Score: 209 bits (531), Expect = 1.300e-58 Identity = 107/204 (52.45%), Postives = 136/204 (66.67%), Query Frame = -3 Query: 4 SSCRDVVALRFQ*GGLGAESRRSLYVGIGRELVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 612
S R +R + GG RRSLY + E VR+SVA SS+RTY SGWR+W AFR +IGE +L GD A AL+ FVAWC + +GN A TISGKLAAVQY HRV+ LE+P APL+ +L G + H+ GTK R R+PV+W T+L G+ L ++WG GGR+LWLCL LSY +ARS+E+ A+ + H VHC RR DV
Sbjct: 536 SEPRSRALMRVEPGG-----RRSLYRRLSGEYVRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDV 734
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE) HSP 1 Score: 122 bits (305), Expect = 2.950e-29 Identity = 64/172 (37.21%), Postives = 102/172 (59.30%), Query Frame = -3 Query: 4 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 519
+V+ SV ++ + Y++ W++W F G G +L L AA I+ L+ F+A + NQ T+ G LAAV++ H++ G E+PTS L+ A KG+ + VG K ++RLP+ W+ + +G S + EGGR++WL LAL+Y LL R+ E+FA + +HP C R +
Sbjct: 1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSL 172
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE) HSP 1 Score: 105 bits (261), Expect = 2.500e-23 Identity = 58/147 (39.46%), Postives = 78/147 (53.06%), Query Frame = -3 Query: 4 LIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDV 441
+IGE +L GD A AL+ F AWC + +G + + L GV + H+ GTK R R+PV+W T+L G+ L ++WG GGR LWL LALSY L+ARS+E+FA+ + H VHC RR DV
Sbjct: 1 MIGESEYLSGDADRAGLEQALLEFAAWCCADKGGRVXS------------------------------LLGVARVHVRAGTKSRNRVPVSWETLLEGQQLTASWGTGGRALWLWLALSYFLVARSDEVFATLSGQCHQVHCLRRSDV 117
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE) HSP 1 Score: 102 bits (254), Expect = 8.600e-22 Identity = 62/175 (35.43%), Postives = 94/175 (53.71%), Query Frame = -3 Query: 1 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDA--LVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVA 519
L VA S+ TY++ W+ WV +R + + D +++ A L ++A+ +GN+ TI+GKL AV+Y H+ G+++P RA+K + T+ RMR P++W + G A+ WGEGGR+LWL LA+SY + R EIFA IH RG+VA
Sbjct: 9 LSTVGVAPSTHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHK-RIGVDLPMKHHFF-RAVKAGLARESTLHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGNGKIHKEFGITRGNVA 181 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17061.1 >prot_C-linearis_contig97.17061.1 ID=prot_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=125bp MNTMQRRLPGRRSGQLPPSPLRTRPRRSTLETRPKTANPTSKFSETTVQLback to top mRNA from alignment at C-linearis_contig97:4581..5311+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17061.1 ID=mRNA_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=731bp|location=Sequence derived from alignment at C-linearis_contig97:4581..5311+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:4581..5311+ >mRNA_C-linearis_contig97.17061.1 ID=mRNA_C-linearis_contig97.17061.1|Name=mRNA_C-linearis_contig97.17061.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at C-linearis_contig97:4581..5311+ (Chordaria linearis ClinC8C monoicous)back to top |