Homology
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE)
HSP 1 Score: 200 bits (509), Expect = 2.260e-54
Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 1
Query: 4 VRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAFL 525
VR+SVA SS+RTY SGWR+W AFR +IGE +L GD A AL+ FVAWC + +GN A TISGKLAAVQY HRV+ LE+P APL+ +L G + H+ GTK R R+PV+W T+L G+ L ++WG GGR+LWLCL LSY +ARS+E+ A+ + H VHC RR DV F
Sbjct: 563 VRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDVEFF 737
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE)
HSP 1 Score: 183 bits (464), Expect = 3.040e-52
Identity = 94/149 (63.09%), Postives = 117/149 (78.52%), Query Frame = 3
Query: 543 LMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYR----KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTR 977
L + WH+AT V VRFRGHKGDQ+++G+ VTRVR+VA GA SQIGAGGGAVA+LVELM+CH+ALP APLCS+R K ++ GY +AL A QI+E AG +PK GLHSLRIG AT +AAGG +PDR+++ EGRWK+ SG+ K YTR
Sbjct: 126 LAQLHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKIYTR 272
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE)
HSP 1 Score: 156 bits (395), Expect = 2.090e-40
Identity = 92/173 (53.18%), Postives = 114/173 (65.90%), Query Frame = 3
Query: 474 FGNSPGAL----LTTRRRRLFDREGRELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYR--KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYT 974
F NS G + TRR F R R+L M W QA RVE+RFRGHKGDQ Q G R RD G RS A GGAVAL+V +SCH LP SAPL SYR ++ ++L Y +AL+A R+I+E +G +PK F LHSLRIGGA+ +AAGG + +RV++REGRWK S + K YT
Sbjct: 255 FANSSGVVHPVHCLTRRDVAFFRGSRQLEYMHWQQADRVEIRFRGHKGDQGQIGDVRARTRDEVHGPRSGYRANGGAVALMVASLSCHATLPDSAPLSSYRSGQEVKVLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWK--SDAYKVYT 425
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE)
HSP 1 Score: 124 bits (312), Expect = 2.380e-29
Identity = 65/174 (37.36%), Postives = 103/174 (59.20%), Query Frame = 1
Query: 1 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAF 522
+V+ SV ++ + Y++ W++W F G G +L L AA I+ L+ F+A + NQ T+ G LAAV++ H++ G E+PTS L+ A KG+ + VG K ++RLP+ W+ + +G S + EGGR++WL LAL+Y LL R+ E+FA + +HP C R + F
Sbjct: 1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSLTF 174
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5JL16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL16_9PHAE)
HSP 1 Score: 107 bits (267), Expect = 2.060e-25
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 3
Query: 714 MSCHIALPGSAPLCSYR----KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTR 977
M+CH+ALP APLCS R K ++ GY +AL A RQI+E AG DPK GLHSLRIG T +AAGG +PDR +REGRWK+ S +LK TR
Sbjct: 1 MACHLALPEDAPLCSCRCRRSKTIKVWGYSKALSALRQIVEEAGGDPKQVGLHSLRIGATTTLAAGGDVPDRTTQREGRWKEGSNTLKICTR 92
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE)
HSP 1 Score: 105 bits (262), Expect = 4.110e-22
Identity = 62/171 (36.26%), Postives = 94/171 (54.97%), Query Frame = 1
Query: 16 VALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDA--LVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAF 522
VA S+ TY++ W+ WV +R + + D +++ A L ++A+ +GN+ TI+GKL AV+Y H+ G+++P RA+K + T+ RMR P++W + G A+ WGEGGR+LWL LA+SY + R EIFA IH RG+VAF
Sbjct: 14 VAPSTHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHK-RIGVDLPMKHHFF-RAVKAGLARESTLHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGNGKIHKEFGITRGNVAF 182
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5K297_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K297_9PHAE)
HSP 1 Score: 69.3 bits (168), Expect = 5.360e-11
Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3
Query: 702 LVELMSCHIALPGSAPLCSY---RKKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKS 953
+VEL+S + LP APL ++ + + M +A A RQ++ LAG P+ + LHSLRIGGAT +AAGG P+ V+ REGRW +S
Sbjct: 1 MVELLSLYTFLPSHAPLVAFGVGQGQWAMWTKCQATVALRQVVALAGLQPEEYALHSLRIGGATFLAAGGASPE-VLRREGRWSGES 86
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE)
HSP 1 Score: 67.0 bits (162), Expect = 8.030e-9
Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 3
Query: 564 QATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRK-KGRMLGY--RRALKAFRQIIELAG 833
+A RVEVRFR KGDQ ++G+ TR R G + GGGAV +++EL+SC LP SAPL ++ +GR + R A +A RQ++ LAG
Sbjct: 237 EADRVEVRFRSSKGDQFRKGAVCTRARP---GPPQSVECGGGAVDVMIELLSCFPVLPSSAPLVAFGTGEGRWSVWTRRHATEALRQVVSLAG 326
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A835YIV1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIV1_9STRA)
HSP 1 Score: 59.3 bits (142), Expect = 5.660e-7
Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 3
Query: 522 FDREGRELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIA-LPGSA----PLCSYRKKGRMLGYRRALKAFRQIIELA---GDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWK 944
F R+GR L + H A RG K DQ + VG+ + + A GG +A V + + +A LP +A PL S + +G + +A I LA G DP+ +G HS+R+GGAT +A G +P R+++ GRW+
Sbjct: 40 FRRQGRPLPAAAGHTADEARFIIRGSKTDQ------------LRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAG-VPGRLIQAAGRWR 175
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match:
A0A6H5L0Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q9_9PHAE)
HSP 1 Score: 57.4 bits (137), Expect = 9.050e-7
Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 3
Query: 702 LVELMSCHIALPGSAPLCSY---RKKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRV 920
+VEL+S + LP APL ++ + + M +A A RQ++ LAG P+ + LHSLRIGGAT +AA G P+ V
Sbjct: 1 MVELLSLYTFLPSHAPLVAFGVGQGQWAMWTKCQATVALRQVVALAGLQPEEYALHSLRIGGATFLAAEGASPEGV 76
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 21
0 1 Expect = 2.26e-54 / Id = 55.43 Expect = 3.04e-52 / Id = 63.09 Expect = 2.09e-40 / Id = 53.18 Expect = 2.38e-29 / Id = 37.36 Expect = 2.06e-25 / Id = 58.70 Expect = 4.11e-22 / Id = 36.26 Expect = 5.36e-11 / Id = 45.98 Expect = 8.03e-9 / Id = 45.16 Expect = 5.66e-7 / Id = 32.89 Expect = 9.05e-7 / Id = 43.42 Sequence A0A6H5KTP7_9PHAE A0A6H5K718_9PHAE A0A6H5KCI7_9PHAE A0A6H5KDK3_9PHAE A0A6H5JL16_9PHAE A0A6H5KDR9_9PHAE A0A6H5K297_9PHAE A0A6H5K3G1_9PHAE A0A835YIV1_9STRA A0A6H5L0Q9_9PHAE
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Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17060.1
>prot_C-linearis_contig97.17060.1 ID=prot_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp
MAVSGSVLSSVGSIRRNFCFVGFGNSPGALLTTRRRRLFDREGRELMSMQ WHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLV ELMSCHIALPGSAPLCSYRKKGRMLGYRRALKAFRQIIELAGDDPKLFGL HSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTR back to top mRNA from alignment at C-linearis_contig97:4110..5099-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig97.17060.1 ID=mRNA_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=990bp|location=Sequence derived from alignment at C-linearis_contig97:4110..5099- (Chordaria linearis ClinC8C monoicous)CTTGTCCGCCAGTCAGTTGCACTGTCGTCTCAGAGAACTTACTCGTCGGG
TTGGCGGTCTTGGGTCGCGTTTCGAGGGTTGATCGGCGAGGGCGCGTTCT
TAGGGGACTTGGGGGCAGCTGACCAGATCGACGCCCTGGTAGCCTTCGTT
GCATGGTGTTCATCGTCACAGGGTAACCAAGCAGGTACCATTTCGGGGAA
GTTGGCGGCGGTACAATACCTTCACCGCGTCGAGGCGGGTTTAGAGATTC
CGACCAGTGCCCCTCTGGTAAACCGCGCGCTCAAGGGAGTAGAGAAAGCA
CATCTAGCAGTCGGTACCAAGCCCAGGATGCGGTTGCCAGTAGCATGGGC
GACAATTCTTCGCGGTGAAACGTTGGCGTCGACGTGGGGCGAGGGGGGTC
GCATGTT ATGGCTGTGTCTGGCTCTGTCCTATCTTCTGTTGGCTCGATCC
GAAGAAATTTTTGCTTCGTCGGCTTCGGGAATTCACCCGGTGCACTGCTA
ACGACGCGGCGACGTCGCCTTTTTGACAGAGAAGGGCGGGAGTTGATGTC
GATGCAGTGGCACCAAGCCACACGGGTGGAAGTTAGATTCAGGGGTCACA
AAGGAGACCAGACCCAGCGGGGGTCATCGGTGACTCGCGTACGGGACGTC
GCGGTCGGCGCGCGTTCGCAGATAGGCGCCGGCGGCGGTGCCGTGGCGCT
CTTGGTGGAACTTATGTCTTGCCACATTGCGTTACCTGGAAGCGCACCTC
TGTGCTCGTACCGTAAAAAAGGGAGAA GTTGGAACCGTAGTGTTGGGATA
CAGAAGAGCACTGAAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACG
ACCCGAAGCTGTTTGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCA
ATGGCTGCGGGTGGGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAG
ATGGAAGCAGAAGTCGGGCTCGCTCAAAAAGTACACTAGA back to top Coding sequence (CDS) from alignment at C-linearis_contig97:4110..5099-
>mRNA_C-linearis_contig97.17060.1 ID=mRNA_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig97:4110..5099- (Chordaria linearis ClinC8C monoicous) ATGGCTGTGTCTGGCTCTGTCCTATCTTCTGTTGGCTCGATCCGAAGAAA TTTTTGCTTCGTCGGCTTCGGGAATTCACCCGGTGCACTGCTAACGACGC GGCGACGTCGCCTTTTTGACAGAGAAGGGCGGGAGTTGATGTCGATGCAG TGGCACCAAGCCACACGGGTGGAAGTTAGATTCAGGGGTCACAAAGGAGA CCAGACCCAGCGGGGGTCATCGGTGACTCGCGTACGGGACGTCGCGGTCG GCGCGCGTTCGCAGATAGGCGCCGGCGGCGGTGCCGTGGCGCTCTTGGTG GAACTTATGTCTTGCCACATTGCGTTACCTGGAAGCGCACCTCTGTGCTC GTACCGTAAAAAAGGGAGAAATGGCTGTGTCTGGCTCTGTCCTATCTTCT GTTGGCTCGATCCGAAGAAATTTTTGCTTCGTCGGCTTCGGGAATTCACC CGGTGCACTGCTAACGACGCGGCGACGTCGCCTTTTTGACAGAGAAGGGC GGGAGTTGATGTCGATGCAGTGGCACCAAGCCACACGGGTGGAAGTTAGA TTCAGGGGTCACAAAGGAGACCAGACCCAGCGGGGGTCATCGGTGACTCG CGTACGGGACGTCGCGGTCGGCGCGCGTTCGCAGATAGGCGCCGGCGGCG GTGCCGTGGCGCTCTTGGTGGAACTTATGTCTTGCCACATTGCGTTACCT GGAAGCGCACCTCTGTGCTCGTACCGTAAAAAAGGGAGAATGTTGGGATA CAGAAGAGCACTGAAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACG ACCCGAAGCTGTTTGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCA ATGGCTGCGGGTGGGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAG ATGGAAGCAGAAGTCGGGCTCGCTCAAAAAGTACACTAGATGTTGGGATA CAGAAGAGCACTGAAGGCCTTCCGCCAGATCATAGAACTAGCGGGAGACG ACCCGAAGCTGTTTGGCTTGCACTCTCTGAGAATTGGAGGAGCCACCGCA ATGGCTGCGGGTGGGCAGATACCGGATAGAGTGGTTGAGAGAGAAGGAAG ATGGAAGCAGAAGTCGGGCTCGCTCAAAAAGTACACTAGA back to top