mRNA_C-linearis_contig97.17060.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5KTP7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTP7_9PHAE) HSP 1 Score: 200 bits (509), Expect = 2.260e-54 Identity = 97/175 (55.43%), Postives = 123/175 (70.29%), Query Frame = 1 Query: 4 VRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFL-GDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAFL 525 VR+SVA SS+RTY SGWR+W AFR +IGE +L GD A AL+ FVAWC + +GN A TISGKLAAVQY HRV+ LE+P APL+ +L G + H+ GTK R R+PV+W T+L G+ L ++WG GGR+LWLCL LSY +ARS+E+ A+ + H VHC RR DV F Sbjct: 563 VRESVAQSSRRTYLSGWRAWCAFRRMIGESEYLSGDADGAGLEQALLEFVAWCCADKGNVAPTISGKLAAVQYFHRVDKQLELPAGAPLIKGSLLGFARVHVRAGTKSRSRVPVSWETLLEGQQLTASWGTGGRVLWLCLTLSYFQVARSDEVCATLSGQCHQVHCLRRSDVEFF 737
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5K718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K718_9PHAE) HSP 1 Score: 183 bits (464), Expect = 3.040e-52 Identity = 94/149 (63.09%), Postives = 117/149 (78.52%), Query Frame = 3 Query: 543 LMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYR----KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTR 977 L + WH+AT V VRFRGHKGDQ+++G+ VTRVR+VA GA SQIGAGGGAVA+LVELM+CH+ALP APLCS+R K ++ GY +AL A QI+E AG +PK GLHSLRIG AT +AAGG +PDR+++ EGRWK+ SG+ K YTR Sbjct: 126 LAQLHWHKATGVRVRFRGHKGDQSEKGACVTRVREVARGASSQIGAGGGAVAVLVELMACHLALPEDAPLCSFRCRRSKTIKVWGYSKALSA--QIVEKAGGNPKQVGLHSLRIGAATTLAAGGDVPDRIIQGEGRWKEGSGTFKIYTR 272
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5KCI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI7_9PHAE) HSP 1 Score: 156 bits (395), Expect = 2.090e-40 Identity = 92/173 (53.18%), Postives = 114/173 (65.90%), Query Frame = 3 Query: 474 FGNSPGAL----LTTRRRRLFDREGRELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYR--KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYT 974 F NS G + TRR F R R+L M W QA RVE+RFRGHKGDQ Q G R RD G RS A GGAVAL+V +SCH LP SAPL SYR ++ ++L Y +AL+A R+I+E +G +PK F LHSLRIGGA+ +AAGG + +RV++REGRWK S + K YT Sbjct: 255 FANSSGVVHPVHCLTRRDVAFFRGSRQLEYMHWQQADRVEIRFRGHKGDQGQIGDVRARTRDEVHGPRSGYRANGGAVALMVASLSCHATLPDSAPLSSYRSGQEVKVLKYDQALRALREIVERSGRNPKDFALHSLRIGGASTLAAGGAVSERVIQREGRWK--SDAYKVYT 425
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5KDK3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK3_9PHAE) HSP 1 Score: 124 bits (312), Expect = 2.380e-29 Identity = 65/174 (37.36%), Postives = 103/174 (59.20%), Query Frame = 1 Query: 1 LVRQSVALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDALVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAF 522 +V+ SV ++ + Y++ W++W F G G +L L AA I+ L+ F+A + NQ T+ G LAAV++ H++ G E+PTS L+ A KG+ + VG K ++RLP+ W+ + +G S + EGGR++WL LAL+Y LL R+ E+FA + +HP C R + F Sbjct: 1 MVQASVGSATHQLYAAKWKAWTKFMSNKGMGPWLHLLDAAVVINTLLEFMACRLFAFDNQLSTVRGYLAAVKFFHKLHLGWEVPTSHCLIVAAGKGIARIRGGVGKKAQVRLPLTWSMLAQGYLTVSEFKEGGRVMWLGLALTYFLLCRASELFAYADGLVHPEFCLTRNSLTF 174
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5JL16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL16_9PHAE) HSP 1 Score: 107 bits (267), Expect = 2.060e-25 Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 3 Query: 714 MSCHIALPGSAPLCSYR----KKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKSGSLKKYTR 977 M+CH+ALP APLCS R K ++ GY +AL A RQI+E AG DPK GLHSLRIG T +AAGG +PDR +REGRWK+ S +LK TR Sbjct: 1 MACHLALPEDAPLCSCRCRRSKTIKVWGYSKALSALRQIVEEAGGDPKQVGLHSLRIGATTTLAAGGDVPDRTTQREGRWKEGSNTLKICTR 92
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5KDR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDR9_9PHAE) HSP 1 Score: 105 bits (262), Expect = 4.110e-22 Identity = 62/171 (36.26%), Postives = 94/171 (54.97%), Query Frame = 1 Query: 16 VALSSQRTYSSGWRSWVAFRGLIGEGAFLGDLGAADQIDA--LVAFVAWCSSSQGNQAGTISGKLAAVQYLHRVEAGLEIPTSAPLVNRALKGVEKAHLAVGTKPRMRLPVAWATILRGETLASTWGEGGRMLWLCLALSYLLLARSEEIFASSASGIHPVHC*RRGDVAF 522 VA S+ TY++ W+ WV +R + + D +++ A L ++A+ +GN+ TI+GKL AV+Y H+ G+++P RA+K + T+ RMR P++W + G A+ WGEGGR+LWL LA+SY + R EIFA IH RG+VAF Sbjct: 14 VAPSTHATYAAAWKLWVEWRTVAVRKSVYLDEARGEEVLASELAKYMAYLFFCRGNKMSTIAGKLVAVKYYHK-RIGVDLPMKHHFF-RAVKAGLARESTLHTESRMRRPISWTILRSGIRTAAAWGEGGRVLWLGLAVSYFFMCRPSEIFAYGNGKIHKEFGITRGNVAF 182
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5K297_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K297_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 5.360e-11 Identity = 40/87 (45.98%), Postives = 56/87 (64.37%), Query Frame = 3 Query: 702 LVELMSCHIALPGSAPLCSY---RKKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWKQKS 953 +VEL+S + LP APL ++ + + M +A A RQ++ LAG P+ + LHSLRIGGAT +AAGG P+ V+ REGRW +S Sbjct: 1 MVELLSLYTFLPSHAPLVAFGVGQGQWAMWTKCQATVALRQVVALAGLQPEEYALHSLRIGGATFLAAGGASPE-VLRREGRWSGES 86
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5K3G1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3G1_9PHAE) HSP 1 Score: 67.0 bits (162), Expect = 8.030e-9 Identity = 42/93 (45.16%), Postives = 58/93 (62.37%), Query Frame = 3 Query: 564 QATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIALPGSAPLCSYRK-KGRMLGY--RRALKAFRQIIELAG 833 +A RVEVRFR KGDQ ++G+ TR R G + GGGAV +++EL+SC LP SAPL ++ +GR + R A +A RQ++ LAG Sbjct: 237 EADRVEVRFRSSKGDQFRKGAVCTRARP---GPPQSVECGGGAVDVMIELLSCFPVLPSSAPLVAFGTGEGRWSVWTRRHATEALRQVVSLAG 326
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A835YIV1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIV1_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 5.660e-7 Identity = 49/149 (32.89%), Postives = 74/149 (49.66%), Query Frame = 3 Query: 522 FDREGRELMSMQWHQATRVEVRFRGHKGDQTQRGSSVTRVRDVAVGARSQIGAGGGAVALLVELMSCHIA-LPGSA----PLCSYRKKGRMLGYRRALKAFRQIIELA---GDDPKLFGLHSLRIGGATAMAAGGQIPDRVVEREGRWK 944 F R+GR L + H A RG K DQ + VG+ + + A GG +A V + + +A LP +A PL S + +G + +A I LA G DP+ +G HS+R+GGAT +A G +P R+++ GRW+ Sbjct: 40 FRRQGRPLPAAAGHTADEARFIIRGSKTDQ------------LRVGSTAVLTAAGGGLADPVRIFADVVAALPAAATAQHPLMSVATRAGGIGALKRREAELLIRSLAMRQGLDPRQYGTHSMRVGGATTLAHAG-VPGRLIQAAGRWR 175
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Match: A0A6H5L0Q9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Q9_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 9.050e-7 Identity = 33/76 (43.42%), Postives = 47/76 (61.84%), Query Frame = 3 Query: 702 LVELMSCHIALPGSAPLCSY---RKKGRMLGYRRALKAFRQIIELAGDDPKLFGLHSLRIGGATAMAAGGQIPDRV 920 +VEL+S + LP APL ++ + + M +A A RQ++ LAG P+ + LHSLRIGGAT +AA G P+ V Sbjct: 1 MVELLSLYTFLPSHAPLVAFGVGQGQWAMWTKCQATVALRQVVALAGLQPEEYALHSLRIGGATFLAAEGASPEGV 76 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig97.17060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig97.17060.1 >prot_C-linearis_contig97.17060.1 ID=prot_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=190bp MAVSGSVLSSVGSIRRNFCFVGFGNSPGALLTTRRRRLFDREGRELMSMQback to top mRNA from alignment at C-linearis_contig97:4110..5099- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig97.17060.1 ID=mRNA_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=990bp|location=Sequence derived from alignment at C-linearis_contig97:4110..5099- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig97:4110..5099- >mRNA_C-linearis_contig97.17060.1 ID=mRNA_C-linearis_contig97.17060.1|Name=mRNA_C-linearis_contig97.17060.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at C-linearis_contig97:4110..5099- (Chordaria linearis ClinC8C monoicous)back to top |