mRNA_C-linearis_contig96.17052.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17052.1
Unique NamemRNA_C-linearis_contig96.17052.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D7G316_ECTSI (Inversin protein alternative isoform n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G316_ECTSI)

HSP 1 Score: 172 bits (435), Expect = 6.430e-43
Identity = 341/493 (69.17%), Postives = 361/493 (73.23%), Query Frame = 1
Query:   16 EVDLKKELKGLLTAFVDGDFHTPPLCTAASKGGVGLVVALLDKLGADKNFKDNAGDTPLMKAADKGHLPVVETLLVAGVDVDIAGVGKCTALHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARRYVDVNILDSDGFSALHAAAKLGQNEVVLALLRVRAHEDLGSCSNETPLMAAVAQGHFPVAETLLAAGADLTIRETHEGYTALHHAAARCRAAHVSLLLRWGADETALNAEGKTPADLIDEQEPQHEAIRLLLARAPVDRAWRRRGWLVMLRSRTLKSGAAGXXXXXXXXXXARSVKQRGGAGGDRPDGDEREGLDLVAAVARLGVVGEGVFRNV 1494
            E   +KE+K LLTAF+DGD  TPPLCTAA+KG  GLV+ALLD  GADKNFKDN G+TPLMKAADKGHLPVVE LL AGVDV I      +ALH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                                                                               ++    LH AA+     HVSLLL+WGADETAL+ +GKTPADLIDE  PQHEA+RLLLARAP DRAWRRRGWLVM+ SRT K+G + XXXXXXXXXXARSVKQ+ GA G +      E  DL AAVA+L VV EGVFRNV
Sbjct:  253 EAKTRKEMKELLTAFIDGDVKTPPLCTAATKGNAGLVMALLDNFGADKNFKDNVGETPLMKAADKGHLPVVEALLDAGVDVAITTDQSISALHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------XXSKNKQLIVLHVAASLNSVEHVSLLLQWGADETALDRDGKTPADLIDESRPQHEAVRLLLARAPADRAWRRRGWLVMVFSRTPKAGGSXXXXXXXXXXXARSVKQQCGARGGK------ESFDLFAAVAQLRVVEEGVFRNV 702          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D7FVI9_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVI9_ECTSI)

HSP 1 Score: 111 bits (278), Expect = 4.790e-23
Identity = 90/222 (40.54%), Postives = 118/222 (53.15%), Query Frame = 1
Query:  856 VDVNILDSDGFSALHAAAKLGQNEVVLALLRVRAHED--------LGSCSNETPLMAAVAQGHFPVAETLLAAGADLTIRETHEGYTALHHAAARCRA-AHVSLLLRWGADETALNAEGKTPADLIDEQEPQHEAIRLLLARAPVDRAWRRRGWLVMLRSRTLKSGAAGXXXXXXXXXXARSVKQRGGAGGDRPDGDEREGLDLVAAVARLGVVGEGVFRNV 1494
            ++++ +D+DG +ALH A  +G++  ++  L V   +         +  C  ET   +    G + V +TL+  GAD+  R    G T LHHA    ++ A + LLL+ GADE ALN +G TP             +R LLA    DRAWRRRGWLVMLR RTLK+G  G          ARS KQRGG+GG        E  +L  AV  LGVV EGVFRNV
Sbjct:  221 LEIDAVDTDGTTALHLAVIMGRSLPIMETLLVAGADPDIRINTGGVQDCPLETACHSKDNIGTYHVCKTLIDHGADVNSRCPF-GSTPLHHACDYSQSDAVLRLLLQAGADENALNDDGDTPG------------VRELLA----DRAWRRRGWLVMLRLRTLKAGGDGGAAG------ARSAKQRGGSGGGE------ESFNLSEAVEWLGVVEEGVFRNV 413          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D8LP40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP40_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 1.500e-21
Identity = 56/87 (64.37%), Postives = 62/87 (71.26%), Query Frame = 1
Query:   34 ELKGLLTAFVDGDFHTPPLCTAASKGGVGLVVALLDKLGADKNFKDNAGDTPLMKAADKGHLPVVETLLVAGVDVDIAGVGKCTALH 294
            ELK LL AFVDG F TPPLCTAA +G V LV+ LLDK+  DKN KD +GDTPL+ AA   H+PVVE LL AGVDVD       TALH
Sbjct:    6 ELKELLNAFVDGGFKTPPLCTAAQQGDVELVILLLDKVQVDKNSKDPSGDTPLILAARGDHMPVVEALLAAGVDVDTISTDG-TALH 91          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D7FKZ6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ6_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 5.660e-19
Identity = 71/110 (64.55%), Postives = 80/110 (72.73%), Query Frame = 1
Query: 1186 KTPADLIDEQEPQHEAIRLLLARAPVDRAWRRRGWLVMLRSRTLKSGAAGXXXXXXXXXXA------RSVKQRGGAGGDRPD-GDEREGLDLVAAVARLGVVGEGVFRNV 1494
            KTP DLI E EP    +RLLLARAP DRAWRRRGWLVMLRSRTL+  AAG  XXXXXXXX       RSVKQRGG+  +  + G E+   DL AAVA+LG++ EGVFRNV
Sbjct:  459 KTPVDLI-ESEPSLGPLRLLLARAPADRAWRRRGWLVMLRSRTLEVRAAGGDXXXXXXXXXXXXXXXRSVKQRGGSDEETNEVGSEKGSFDLSAAVAQLGLIEEGVFRNV 567          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D7G0H9_ECTSI (Ankyrin repeat domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0H9_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 1.780e-18
Identity = 66/149 (44.30%), Postives = 87/149 (58.39%), Query Frame = 1
Query:  889 SALHAAAKLGQNEVVLALLRVRAHEDLGSCSNETPLMAAVAQGHFPVAETLLAAGADLTIRETHEGY--TALHHAAARCRAAHVSLLLRWGADETALNAEGKTPADLIDEQEPQHEA------IRLLLARAPVDRAWRRRGWLVMLRSR 1311
            S LHAA++ G+ +V+  L+   AH ++   +N+TPL+ A   GH      LLA+GA    R   +G   +ALH A  +  AA VS LLR GADET  + +G +PA +I       E       IR +L RAP DRAWRRRGWLVMLR+R
Sbjct:   38 SPLHAASRAGKPDVIACLVGAGAHTEVRDRNNDTPLLLAAWLGHATAIAKLLASGA----RVDADGIPRSALHCACMQGHAACVSELLRGGADETVEDEDGNSPAQVIGTMSESLERAEDIVLIREMLRRAPADRAWRRRGWLVMLRNR 182          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.750e-17
Identity = 68/165 (41.21%), Postives = 82/165 (49.70%), Query Frame = 1
Query:  862 VNILDSDGFSALHAAAKLGQNE--VVLALLRVRAHEDLGSCSNETPLMAAVAQGHFPVAETLLAAGADLTIRETHEGYTALHHAAARCR---AAHVSLLLRWGADETALNAEGKTPADLIDEQEPQH--------EAIRLLLARAPVDRAWRRRGWLVMLRSRTL 1317
            V+  D  G +ALH A          V  L++ RA  +L S    TPL AA           LL   A +  R    G T LH A    R   AA + LLLRWGADETA N  G+TP D++      +        +  RLLL RAP DR WRRRGWLV+LRSRT+
Sbjct:  266 VDAQDRAGCTALHTAILFSDRAGPAVHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSRTI 430          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.210e-17
Identity = 65/126 (51.59%), Postives = 77/126 (61.11%), Query Frame = 1
Query:  991 PLMAAVAQGHFPVAETLLAAGADLTIRETHEGYTALHHAAARCRA---AHVSLLLRWGADETALNAEGKTPADLIDEQEPQHEA----------IRLLLARAPVDRAWRRRGWLVMLRS--RTLKS 1323
            PL +A    +     TLL  GA LT ++T EG T LH A  R      A V LLLRWGADETALN  GKTPA L+DE + +++           +R+LLARAP DRAWRRR WLVMLRS  RT K+
Sbjct:  309 PLFSATDPRNLKAMHTLLWHGASLTAQDT-EGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKA 433          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D8LCR2_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR2_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.580e-16
Identity = 68/172 (39.53%), Postives = 95/172 (55.23%), Query Frame = 1
Query:  859 DVNILDSDGFSALHAAAKLGQNEVVLALLRVRA------------HEDLGSC-SNETPLMAAVAQGHFPVAETLLAAGADLTIRETHEGYTALHHAAAR---CRAAHVS-LLLRWGADETALNAEGKTPADLIDEQEPQHEAIRLLLARAPVDRAWRRRGWLVMLRSRTLKS 1323
            DV  +D+ G+SALH A + G+++VV AL+ V A            + D G C    TPL  A  QG++P    LL  G      +   G++ LH        C AA  S +LLR GADETA + +  TPAD++   E  +  ++ LLA AP DRAWRRRG LVMLR++ +++
Sbjct:  186 DVTSVDNIGYSALHWAVRDGRSDVVDALIEVGADVEARTSRMISYYSDGGHCMKGMTPLHEAAYQGNYPGMLVLLQKGRANANAQDEHGHSPLHILCMNPQVCSAAACSDILLRSGADETATDEDRHTPADIMASSEGHNGWLQQLLANAPADRAWRRRGTLVMLRAQGVQA 357          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 2.360e-16
Identity = 62/123 (50.41%), Postives = 76/123 (61.79%), Query Frame = 1
Query:  979 SNETPLMAAVAQGHFPVAETLLAAGADLTIRETHEGYTALHHAAARCRA---AHVSLLLRWGADETALNAEGKTPADLIDEQEPQH----------EAIRLLLARAPVDRAWRRRGWLVMLRS 1308
            S+  PL +A    +     TLL  GA LT ++  +G T LH A  R  +   A V LLLRWGADETALN +GKTPADL+DE + ++          E +RLLLARAP D+A RRR WLVMLRS
Sbjct:  519 SSAPPLFSATDPRNLKAMNTLLGHGASLTAQDV-DGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRS 640          
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.260e-16
Identity = 80/242 (33.06%), Postives = 118/242 (48.76%), Query Frame = 1
Query:  847 RRYVDVNILDSDGFSALHAAAKLGQN-----EVVLALLRVRAHEDLGSCSNE--TPLMAAVAQGHFPVAE--TLLAAGADLTIRETHEGYTALHHAAARCRAAHVSLLLRWGADETALNAEGKTPADLI----------DEQEPQHEAIRLLLARAPVDRAWRRRGWLVMLRSRTLK----SGAAGXXXXXXXXXXARSVKQRGGAGGDRPDGDEREGL--DLVAAVARL-GVVGEGVFRNV 1494
            +R  +V+  +  G++ALH  A   +      + V  LL   A  ++   ++   TPL  AV +          LL  GA++  R   +  T LH A  R R + V LLLRWGADE   N +G TPAD++          +E+E  ++ I  +LARAP DR+WRRRGWLV+ RS   +    +G++           +  V +  G G  R D +  + +  DL   V RL G+  EG+FR V
Sbjct:  267 KRSSEVDTANDLGWAALHYVASFDETVRDKGDAVRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDD-TPLHIACTRLRGSVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEEREADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSAKVARVSGQGSSRDDEETEDQMMVDLRDLVGRLVGLEAEGLFRLV 507          
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17052.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G316_ECTSI6.430e-4369.17Inversin protein alternative isoform n=1 Tax=Ectoc... [more]
D7FVI9_ECTSI4.790e-2340.54Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LP40_ECTSI1.500e-2164.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FKZ6_ECTSI5.660e-1964.55Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D7G0H9_ECTSI1.780e-1844.30Ankyrin repeat domain protein n=2 Tax=Ectocarpus T... [more]
D7FLL7_ECTSI1.750e-1741.21Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LS36_ECTSI2.210e-1751.59Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LCR2_ECTSI1.580e-1639.53Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWW4_9PHAE2.360e-1650.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQN0_ECTSI6.260e-1633.06Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:550641..552134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score174.1
Seed ortholog evalue1.6e-40
Seed eggNOG ortholog2880.D7G316
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size1494
Cds size1494
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930826.6707647-CDS-C-linearis_contig96:550640..5521341622930826.6707647-CDS-C-linearis_contig96:550640..552134Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 550641..552134 -
1690881270.0950415-CDS-C-linearis_contig96:550640..5521341690881270.0950415-CDS-C-linearis_contig96:550640..552134Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 550641..552134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17052.1prot_C-linearis_contig96.17052.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 550641..552134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17052.1

>prot_C-linearis_contig96.17052.1 ID=prot_C-linearis_contig96.17052.1|Name=mRNA_C-linearis_contig96.17052.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=498bp
ARKEKEVDLKKELKGLLTAFVDGDFHTPPLCTAASKGGVGLVVALLDKLG
ADKNFKDNAGDTPLMKAADKGHLPVVETLLVAGVDVDIAGVGKCTALHIA
ATRGFDGIVDALLKSGADKNALDRTGGTSLMEAAYHGRLPVVKILMAARA
GINITDAKGTTALHGAAQEGHDEIVDALLVAGAEKDVRQDDDSTPLSLAA
GNGHLPVVKTLLAARARVDDRTSDGRSPLHRAAEEGHGEIANALLGAGAQ
PDPRDNSGNYPLIVAIKAGHLSVVKAFIAAAARRYVDVNILDSDGFSALH
AAAKLGQNEVVLALLRVRAHEDLGSCSNETPLMAAVAQGHFPVAETLLAA
GADLTIRETHEGYTALHHAAARCRAAHVSLLLRWGADETALNAEGKTPAD
LIDEQEPQHEAIRLLLARAPVDRAWRRRGWLVMLRSRTLKSGAAGGDGGD
GGDAGARSVKQRGGAGGDRPDGDEREGLDLVAAVARLGVVGEGVFRNV
back to top

mRNA from alignment at C-linearis_contig96:550641..552134-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17052.1 ID=mRNA_C-linearis_contig96.17052.1|Name=mRNA_C-linearis_contig96.17052.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1494bp|location=Sequence derived from alignment at C-linearis_contig96:550641..552134- (Chordaria linearis ClinC8C monoicous)
GCTAGAAAGGAGAAGGAAGTCGATCTGAAGAAGGAACTGAAAGGACTGCT GACTGCGTTCGTCGACGGAGATTTTCATACTCCACCCCTCTGCACTGCTG CCAGCAAGGGGGGCGTGGGGCTTGTGGTGGCGCTCTTGGACAAGCTGGGA GCTGACAAAAATTTCAAGGACAACGCCGGTGACACACCCCTGATGAAAGC AGCTGACAAAGGCCACTTGCCCGTCGTGGAGACTTTGTTGGTCGCTGGTG TCGACGTCGACATCGCCGGTGTCGGCAAATGTACTGCTCTCCACATAGCC GCTACCAGGGGGTTTGACGGGATAGTGGATGCTCTCTTGAAGTCGGGAGC GGACAAGAACGCGCTCGACCGAACTGGCGGAACCTCGCTGATGGAAGCAG CTTACCATGGCCGACTGCCTGTCGTAAAGATCTTGATGGCTGCGCGTGCC GGCATCAATATCACCGACGCAAAGGGAACCACTGCCCTCCACGGAGCTGC CCAGGAAGGGCATGACGAAATAGTGGATGCCCTCTTGGTCGCGGGTGCGG AAAAGGACGTACGTCAGGACGACGACTCCACCCCGCTATCGCTTGCAGCT GGCAATGGACACCTGCCTGTCGTGAAGACCTTGCTGGCCGCGCGTGCCAG AGTCGATGACAGAACCTCCGACGGACGCTCTCCTCTCCACCGAGCTGCCG AGGAAGGACACGGTGAAATAGCGAACGCCCTCTTGGGCGCGGGAGCGCAG CCGGATCCACGCGACAACAGCGGAAACTACCCGCTCATTGTTGCAATCAA AGCAGGTCACCTGTCTGTAGTGAAGGCCTTCATAGCCGCTGCTGCTCGTC GTTATGTCGACGTCAACATCCTGGACTCTGACGGCTTTTCTGCTCTCCAC GCAGCCGCCAAGCTTGGGCAGAACGAGGTAGTGCTTGCTCTGTTGCGCGT GAGAGCTCACGAGGACCTGGGATCCTGTTCCAATGAAACCCCTCTGATGG CGGCCGTCGCTCAAGGGCATTTTCCTGTCGCGGAGACTCTGCTGGCGGCC GGTGCCGACCTCACCATCCGCGAAACTCATGAAGGGTATACTGCTCTACA CCATGCCGCCGCGAGATGCAGAGCGGCTCATGTGAGCCTCCTGCTGCGGT GGGGGGCGGACGAAACAGCTTTGAATGCAGAGGGCAAGACTCCCGCGGAT CTCATTGACGAGCAGGAGCCTCAACATGAGGCTATCCGCCTCCTGCTGGC TCGGGCTCCGGTCGACAGAGCGTGGCGTCGTCGGGGCTGGCTTGTTATGC TTCGGTCGCGCACCCTGAAATCGGGGGCAGCCGGAGGCGATGGTGGCGAT GGTGGCGACGCGGGAGCGCGCTCGGTGAAGCAGCGGGGTGGGGCTGGTGG CGATCGGCCGGATGGTGATGAGAGGGAGGGATTGGACCTAGTCGCGGCGG TGGCTCGGCTTGGGGTGGTGGGAGAAGGCGTGTTTCGCAACGTC
back to top

Coding sequence (CDS) from alignment at C-linearis_contig96:550641..552134-

>mRNA_C-linearis_contig96.17052.1 ID=mRNA_C-linearis_contig96.17052.1|Name=mRNA_C-linearis_contig96.17052.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2988bp|location=Sequence derived from alignment at C-linearis_contig96:550641..552134- (Chordaria linearis ClinC8C monoicous)
GCTAGAAAGGAGAAGGAAGTCGATCTGAAGAAGGAACTGAAAGGACTGCT
GACTGCGTTCGTCGACGGAGATTTTCATACTCCACCCCTCTGCACTGCTG
CCAGCAAGGGGGGCGTGGGGCTTGTGGTGGCGCTCTTGGACAAGCTGGGA
GCTGACAAAAATTTCAAGGACAACGCCGGTGACACACCCCTGATGAAAGC
AGCTGACAAAGGCCACTTGCCCGTCGTGGAGACTTTGTTGGTCGCTGGTG
TCGACGTCGACATCGCCGGTGTCGGCAAATGTACTGCTCTCCACATAGCC
GCTACCAGGGGGTTTGACGGGATAGTGGATGCTCTCTTGAAGTCGGGAGC
GGACAAGAACGCGCTCGACCGAACTGGCGGAACCTCGCTGATGGAAGCAG
CTTACCATGGCCGACTGCCTGTCGTAAAGATCTTGATGGCTGCGCGTGCC
GGCATCAATATCACCGACGCAAAGGGAACCACTGCCCTCCACGGAGCTGC
CCAGGAAGGGCATGACGAAATAGTGGATGCCCTCTTGGTCGCGGGTGCGG
AAAAGGACGTACGTCAGGACGACGACTCCACCCCGCTATCGCTTGCAGCT
GGCAATGGACACCTGCCTGTCGTGAAGACCTTGCTGGCCGCGCGTGCCAG
AGTCGATGACAGAACCTCCGACGGACGCTCTCCTCTCCACCGAGCTGCCG
AGGAAGGACACGGTGAAATAGCGAACGCCCTCTTGGGCGCGGGAGCGCAG
CCGGATCCACGCGACAACAGCGGAAACTACCCGCTCATTGTTGCAATCAA
AGCAGGTCACCTGTCTGTAGTGAAGGCCTTCATAGCCGCTGCTGCTCGTC
GTTATGTCGACGTCAACATCCTGGACTCTGACGGCTTTTCTGCTCTCCAC
GCAGCCGCCAAGCTTGGGCAGAACGAGGTAGTGCTTGCTCTGTTGCGCGT
GAGAGCTCACGAGGACCTGGGATCCTGTTCCAATGAAACCCCTCTGATGG
CGGCCGTCGCTCAAGGGCATTTTCCTGTCGCGGAGACTCTGCTGGCGGCC
GGTGCCGACCTCACCATCCGCGAAACTCATGAAGGGTATACTGCTCTACA
CCATGCCGCCGCGAGATGCAGAGCGGCTCATGTGAGCCTCCTGCTGCGGT
GGGGGGCGGACGAAACAGCTTTGAATGCAGAGGGCAAGACTCCCGCGGAT
CTCATTGACGAGCAGGAGCCTCAACATGAGGCTATCCGCCTCCTGCTGGC
TCGGGCTCCGGTCGACAGAGCGTGGCGTCGTCGGGGCTGGCTTGTTATGC
TTCGGTCGCGCACCCTGAAATCGGGGGCAGCCGGAGGCGATGGTGGCGAT
GGTGGCGACGCGGGAGCGCGCTCGGTGAAGCAGCGGGGTGGGGCTGGTGG
CGATCGGCCGGATGGTGATGAGAGGGAGGGATTGGACCTAGTCGCGGCGG
TGGCTCGGCTTGGGGTGGTGGGAGAAGGCGTGTTTCGCAACGTCGCTAGA
AAGGAGAAGGAAGTCGATCTGAAGAAGGAACTGAAAGGACTGCTGACTGC
GTTCGTCGACGGAGATTTTCATACTCCACCCCTCTGCACTGCTGCCAGCA
AGGGGGGCGTGGGGCTTGTGGTGGCGCTCTTGGACAAGCTGGGAGCTGAC
AAAAATTTCAAGGACAACGCCGGTGACACACCCCTGATGAAAGCAGCTGA
CAAAGGCCACTTGCCCGTCGTGGAGACTTTGTTGGTCGCTGGTGTCGACG
TCGACATCGCCGGTGTCGGCAAATGTACTGCTCTCCACATAGCCGCTACC
AGGGGGTTTGACGGGATAGTGGATGCTCTCTTGAAGTCGGGAGCGGACAA
GAACGCGCTCGACCGAACTGGCGGAACCTCGCTGATGGAAGCAGCTTACC
ATGGCCGACTGCCTGTCGTAAAGATCTTGATGGCTGCGCGTGCCGGCATC
AATATCACCGACGCAAAGGGAACCACTGCCCTCCACGGAGCTGCCCAGGA
AGGGCATGACGAAATAGTGGATGCCCTCTTGGTCGCGGGTGCGGAAAAGG
ACGTACGTCAGGACGACGACTCCACCCCGCTATCGCTTGCAGCTGGCAAT
GGACACCTGCCTGTCGTGAAGACCTTGCTGGCCGCGCGTGCCAGAGTCGA
TGACAGAACCTCCGACGGACGCTCTCCTCTCCACCGAGCTGCCGAGGAAG
GACACGGTGAAATAGCGAACGCCCTCTTGGGCGCGGGAGCGCAGCCGGAT
CCACGCGACAACAGCGGAAACTACCCGCTCATTGTTGCAATCAAAGCAGG
TCACCTGTCTGTAGTGAAGGCCTTCATAGCCGCTGCTGCTCGTCGTTATG
TCGACGTCAACATCCTGGACTCTGACGGCTTTTCTGCTCTCCACGCAGCC
GCCAAGCTTGGGCAGAACGAGGTAGTGCTTGCTCTGTTGCGCGTGAGAGC
TCACGAGGACCTGGGATCCTGTTCCAATGAAACCCCTCTGATGGCGGCCG
TCGCTCAAGGGCATTTTCCTGTCGCGGAGACTCTGCTGGCGGCCGGTGCC
GACCTCACCATCCGCGAAACTCATGAAGGGTATACTGCTCTACACCATGC
CGCCGCGAGATGCAGAGCGGCTCATGTGAGCCTCCTGCTGCGGTGGGGGG
CGGACGAAACAGCTTTGAATGCAGAGGGCAAGACTCCCGCGGATCTCATT
GACGAGCAGGAGCCTCAACATGAGGCTATCCGCCTCCTGCTGGCTCGGGC
TCCGGTCGACAGAGCGTGGCGTCGTCGGGGCTGGCTTGTTATGCTTCGGT
CGCGCACCCTGAAATCGGGGGCAGCCGGAGGCGATGGTGGCGATGGTGGC
GACGCGGGAGCGCGCTCGGTGAAGCAGCGGGGTGGGGCTGGTGGCGATCG
GCCGGATGGTGATGAGAGGGAGGGATTGGACCTAGTCGCGGCGGTGGCTC
GGCTTGGGGTGGTGGGAGAAGGCGTGTTTCGCAACGTC
back to top