mRNA_C-linearis_contig96.17051.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Match: D7FHJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ0_ECTSI) HSP 1 Score: 836 bits (2160), Expect = 3.090e-290 Identity = 506/921 (54.94%), Postives = 623/921 (67.64%), Query Frame = 1 Query: 1 MEQNKKMASEQVKAWKGTFTKSKRGKGDTMTYLRLRKTLVEGLTGDGDGQLEIVPGKVFFRRDMLDSLKKWYNLNSKYNPVDIGVVLDETCVKIDGVVYTVGSVEDGWYSLNVSDFEIEQWELLESRCGDDGGAHDSLVTLEEDLKRYIRSLINDHEALWRSFVPYLRNGQKPKRGVAKIRTDTVLKDVSKG--SAKVRGYLARVANMRRLSKLAFVNTSVADCFHTLPVRATCEGDDGHDAAKSLRDFSSEEGSLCKLNGLDGIE*PCTERDEDDAKNMVNVSGKEKHGSYMNHINHALRVLQYSYRLNRPVSLHEAFFPLCTHERKVFSQHFPWWKENESYEEHFFLEPFRIHADPEKMTIAMRFSLERCAEVLPTLSPTMTKIISRDNERLGPLCDGSNHTGGTAFQAKVLGLVNFIIGGDLETGRHNGMQKATKKELSLVYENGATCLQRKRTEADKEEKANGGTRGPAKKDRKGKVPFSGQTIKQTLEGMQFLFEGMYRNGMKKVLDAVDDIDETCTGKGGWCYSILESAQVASQNNSKRAKFKEEQLQGTEE-QKKKIDLVVQGLRERKITGKDFELASAAAGAFDAFSSASLRNQGFFFREALRTCVESETKSRNLGRMVAGLPGKNKNDNKGXXXXXXAAQEHVIDADCGEWYAVMMVIGRPFYRSLDDYPGEQSPYIGPLDAVGGAMPQKRFNAILGKLGRAYLGVENLTFNQLRTALCSIVIAECIKLGVRMDDPVIADFASSIITSVKMMQTRYNIHRAATTQSRAIHGKYKGQVDFKGGAYGILKGAVERELEXXXXXXXXXXXXGGGTELPQPDSDLQRMQRKLELLESENRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALKAKAVCWRTLFRGGRGSAAAAVRTTDHKEHTLLRRPPEKG 2754
M++N K+A EQV+A+ TF + K +TMT+ L TLV+GL GDG+GQLEIV GKV+F+RD LDSLKKWYNLN+KYNP DIGVVL+ETCVK DGVVYTV SVE+GWYSL S+ E+EQWELLESR +DGG +S VTLEEDL+RYIRSL++ HE ++RS VP+ ++GV + TD +L D SK S++ R L VA+MRRLSKLAFVNTSVAD FH LPVRAT EGD GHD A LR F+S +GSLC+L+GL G+ E+D K MV +SG + HG+Y +HIN+A+++LQYSYRL RP+S +EA+ P+C ERKV S HF W++NE +E F +EPFRI+ DP+KMT+AMRFSLERC EV+P + P M K++S+D+ R G L D SNHTG AK L L+ ++ D E G T+ L VY LQ KR EA +EE G +G AKK RKG VPF+ +++ E ++FL GMY NGMK+VLDA+D+ID C G GWCY IL A+VAS + KR F E+QL+G +E Q+++I VV+GL+ R I + FELASAA G D S LRNQGFFFR V +SRN GRMVAGLP KN G A+EHVID DCG WYAV VIGR F+ S+DD GE SPYIGP+DA GG M QKRFN I+ K+GRAYL VENLT Q RTA C++V++ LG+ M PVI DFAS ++S KMM+TRY +HRA T Q+ +YKG VDF GGAY ILKGAVE E E GG DLQ +R+ + E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AL+ +FRG RGSA+AA+RT ++ LRRPP +G
Sbjct: 1 MKKNMKLAEEQVRAYADTFDGTTTRKDETMTFPILISTLVDGLPGDGEGQLEIVRGKVYFKRDELDSLKKWYNLNAKYNPTDIGVVLEETCVKFDGVVYTVESVEEGWYSLRDSNIEMEQWELLESRFSEDGGVSNSPVTLEEDLRRYIRSLLSWHELMYRSLVPF-------QKGVQPVGTDGMLDDWSKRELSSEEREQLESVASMRRLSKLAFVNTSVADIFHALPVRATREGDTGHDEANFLRAFASSKGSLCRLDGLGGLREHGDFMVENDRKLMVRMSGDDLHGAYPSHINYAMQLLQYSYRLTRPISFYEAYLPICAGERKVLSDHFDCWRDNEKSQEDFSVEPFRINGDPKKMTVAMRFSLERCNEVIPNIPPAMVKVLSKDDGRYGTLIDKSNHTGTFTKAAKALPLLKCVMQRDPELGLEES--GPTEFALGQVYNQVGKFLQAKRNEAGEEEGRESGLKGVAKKARKGNVPFARLPYEESFELVKFLLRGMYINGMKRVLDAIDEIDGKCLGDDGWCYDILRVAEVASTSVKKRPVFTEKQLRGVDEVQRRRIAAVVEGLKSRGIRREHFELASAATGVRDMVSPHPLRNQGFFFRRWANFSVNGRRESRNPGRMVAGLPPKNNLSKHGHGSGNGVAREHVIDVDCGYWYAVTNVIGRAFFESVDDPQGELSPYIGPVDARGGVMAQKRFNGIVKKIGRAYLAVENLTIMQFRTACCTLVMSLSTALGIPMSSPVIKDFASGFLSSEKMMETRYYVHRAVTKQTGRFQLRYKGVVDFSGGAYSILKGAVEHEREMEGGSS------AGGR-------DLQLREREKAVREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHALECIG---EEVFRGERGSASAAMRTASRQQDLFLRRPPAEG 896
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Match: D8LD08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD08_ECTSI) HSP 1 Score: 476 bits (1225), Expect = 3.880e-152 Identity = 266/610 (43.61%), Postives = 371/610 (60.82%), Query Frame = 1 Query: 598 LARVANMRRLSKLAFVNTSVADCFHTLPVRATCEGDDGHDAAKSLRDFSSEEGSLCKLNGLDGI----E*PCTERDEDDAKNMVNV---SGKEKHGSYMNHINHALRVLQYSYRLNRPVSLHEAFFPLCTHERKVFSQHFPWWKENESYEEHFFLEPFRIHADPEKMTIAMRFSLERCAEVLPTLSPTMTKIISRDNERLGPLCDGSNHTGGTAFQAKVLGLVNFIIGGDLETGRHNGMQKATKKELSLVYENGATCLQRKRTEADKEEKANGGTRGPAKKDRKGKVPFSGQTIKQTLEGMQFLFEGMYRNGMKKVLDAVDDIDETCTGKGGWCYSILESAQVASQNNSKRAKFKEEQLQGTEEQKKKIDLVVQGLRERKITGKDFELASAAAGAFDAFSSASLRNQGFFFREALRTCVESETKSRNLGRMVAGLPGKNKNDNKGXXXXXXAAQEHVIDADCGEWYAVMMVIGRPFYRSLDDYPGEQSPYIGPLDAVGGAMPQKRFNAILGKLGRAYLGVENLTFNQLRTALCSIVIAECIKLGVRMDDPVIADFASSIITSVKMMQTRYNIHRAATTQSRAIHGKYKGQVDFKGGAYGILKGAVERELE 2406
L +ANMRRLS L F N SV D HTLPV+AT EGD GH+ A +LR F+S EGSL KLN L G+ D++D K MV + G+ HG+Y +HINH + +LQY+YRLNRP+SLHE + PLC ER+V +HF W +NE ++ + + + +K T AMRFSLE EVLP + PTM ++SRD ++ G D S++ + AK ++ ++ + + G Q T + +Y L KR +A E G G A K +KG+VP + + L ++ LF+G+Y NGMK ++DA+ +ID TC GKGGWCY IL +A+ + N K+A EQL+G +Q+ + +V+ L+E+ +T K FELAS A D F+S LRNQGF++R A V + +S+N GR+VA LPGK+K G AAQEHVID D G+WYA+ V+GR F+RS S +IGP+D G M +RF IL K+G+AYL EN++ +RT + ++V+AEC LG+RMDDP+I DFASSI++S MQ Y+ HRA QSR + Y+G +DF GGAYG+++G+ +R LE
Sbjct: 18 LEGIANMRRLSILVFANASVEDTVHTLPVKATEEGDAGHEEATALRAFASSEGSLSKLNFLGGLGGADNISAALVDDNDKKLMVRMVARKGESVHGAYPSHINHVVHLLQYTYRLNRPISLHEGYHPLCAAEREVLREHFGCWDDNEDDQDDYTISLVSTNFSGDK-TFAMRFSLESSNEVLPVMPPTMIGVLSRDPDKYGTKLDTSSYVDTFSKVAKAFDVLKIVMDQNAVDNQGGGGQ--TDAAIERMYAQIKYLLHDKRLQAGALEGKISGLTGVATKTKKGRVPLVTFSNEHNLRALKLLFKGLYVNGMKPLMDAIAEIDATCAGKGGWCYDILRAAEFPATNTKKKAVVTVEQLEGNAKQRLLVMKMVEALKEKGVTRKHFELASVCASVRDVFTSYPLRNQGFYYRRATHLHVNGQNESKNPGRVVARLPGKSKVSKHGNGSGDGAAQEHVIDVDTGDWYAIPNVVGRAFHRSFSGDNSIASQFIGPMDKKGNDMKPERFKGILKKIGQAYLSSENMSVTSMRTVVVTLVMAECTALGIRMDDPIIKDFASSILSST--MQKHYDAHRATIRQSRRVQRGYEGTIDFSGGAYGVVEGSEKRRLE 622
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Match: A0A6H5JK98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK98_9PHAE) HSP 1 Score: 276 bits (706), Expect = 9.220e-75 Identity = 224/724 (30.94%), Postives = 343/724 (47.38%), Query Frame = 1 Query: 205 KKWYNLNSKYNPVDIGVVLDETCVKIDGVVYTVGSVEDGWYSL----NVSDFEIEQWELLESRCGDDGGAHDSLVTLEEDLKRYIRSLINDHEALWRSFVPYLRNGQKP-KRGVAKIRTDTVLKDVSKGSAKVRGYLAR---VANMRRLSKLAFVNTSVADCFHTLPVRATC-EGDDGHDAAKSLRDFSSEEGSLCKLNGLDGIE*PCTERDEDDAKNMVNVS-----GKEKHGSYMNHINHALRVLQYSYRLNRPVSLHEAFFPLCTHERKVFSQHFPWWKENESYEEHFFLEPFRIHADPEKMTIAMRFSLERCAEVLPTLSPTMTKIISRDNERLGPLCDGSNHTGGTAFQAKVLGLVNFIIGGDLETGRHNGMQKATKKELSLVYENGATCLQRKRTEADKEEKANGGTRGPAKKDRKGKVPFSGQTIKQTLEGMQFLFEGMYRNGMKKVLDAVDDIDETCTGKGGWCYSILESAQVASQNNSKRAKFKEEQLQGTE-EQKKKIDLVVQGLRERKITGKDFELASAAAGAFDAFSSASLRNQGFFFREALRTCVESETK---------SRNLGRMVAGLPGKNKNDNKGXXXXXXAAQEHVIDADCGEWYAVMMVIGRPFYRS----LDDYPGEQSPYIGPLDAVGGAMPQK-RFNAILGKLGRAYLGVENLTFNQLRTALCSIVIAECIKLGVRMDDPVIADFASSIITSVKMMQTRYN 2289
K+ YN+ SK NP DIG+++ ET VK+DGV YTV SVEDG YSL + E+ QWE+LE+R D G H TLEED +++ SLI + +W + VPYL +GQ G +++ + ++ S + G AR V R L+K A + D L EGDD LR F+ EGSL +LNGL + ++ D K ++N+ G + G + INH LRV QY+YRL RP S+HE + PLC E S+ F W+E++ + + E M+ A RF++ R + + P L P +I SRD E+ G + D S H K ++ +I+ G + M K +++ +T + + D ++ G ++G + +KGK+P ++ E ++ + E + +NG + +D ID GK GWC+ I+ + + S G ++KK+ID +V+ L++ + +DFE A A A++ A LR+Q F + + SE K RN+ R+ PGK K +E V D C EW V++VIG FY L+D G + G M K F+ ++ K+G +LGVENLT + LRT + S+ + G ++D + A S+ T VKM+ YN
Sbjct: 179 KESYNMVSKVNPGDIGIIMGETRVKMDGVHYTVVSVEDGLYSLAKDGGAASKELGQWEVLENRIHD-GQGH---ATLEEDQRKFAISLILQYGNMWLTMVPYLNHGQAAIPEGEGRVQVSNMTYKMTDVSGE--GLAARHEDVMTARSLTKAALKKLKMVDAIDGLRFPGLAQEGDD------DLRTFAEREGSLGELNGLQKL---LGDKSGLDKKILLNIRSRYPPGMKPTGDFKAVINHMLRVQQYAYRLGRPASIHEGYHPLCDKEVTALSKFFRGWEEDDDDSG----QCLGTSSTSENMSWATRFAVRRSSMIYPDLFPASLEIESRDTEKHGSVVDSSKHVNVYTKTRKAKHVIKWIL---QNGGVCDNMDKKIDTAVAIFELTKSTVTDARAKKKDYDDTTTG-SQGDSNTLKKGKLPLLLLDPLKSEECLRLMTEALTKNGWGYLRGQIDLIDPMAWGKNGWCWEIVVDGFKDATDKSNPPATGHAHFGGRNGKEKKRIDRMVEKLKDAGVELRDFEAAWGATSVLSAYNGACLRDQFHRFLKKRTAHIRSENKVTGRRGLGDGRNVDRVTMWPPGKGKTGK---------CKERVFDPLCSEWLTVLLVIGWAFYDKEGVVLEDEMG--------IPNSNGKMKLKGSFDVVMKKVGSTFLGVENLTLHNLRTVVSSLAVKYFYGKGYNLNDAPLLQLAESMDTGVKMLVGPYN 862
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Match: D7G514_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G514_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 8.440e-20 Identity = 57/112 (50.89%), Postives = 72/112 (64.29%), Query Frame = 1 Query: 598 LARVANMRRLSKLAFVNTSVADCFHTLPVRATCEGDDGHDAAKSLRDFSSEEGSLCKLNGLDGI----E*PCTERDEDDAKNMVNV---SGKEKHGSYMNHINHALRVLQYS 912
L VA MRRLS+LAF N S+ D H LPV+AT EGD GH+ A +LR F+S EGSL KLN L GI E D++D M+ + GK HG+Y +HINHA+ +LQY+
Sbjct: 31 LGGVATMRRLSRLAFANASMEDTVHALPVKATAEGDAGHEEAIALRAFASSEGSLSKLNFLGGIGGADETSDALVDDNDTALMIRMVTRKGKSVHGAYPSHINHAVHLLQYT 142 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17051.1 >prot_C-linearis_contig96.17051.1 ID=prot_C-linearis_contig96.17051.1|Name=mRNA_C-linearis_contig96.17051.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=641bp MVNVSGKEKHGSYMNHINHALRVLQYSYRLNRPVSLHEAFFPLCTHERKVback to top mRNA from alignment at C-linearis_contig96:535823..539256+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17051.1 ID=mRNA_C-linearis_contig96.17051.1|Name=mRNA_C-linearis_contig96.17051.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3434bp|location=Sequence derived from alignment at C-linearis_contig96:535823..539256+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:535823..539256+ >mRNA_C-linearis_contig96.17051.1 ID=mRNA_C-linearis_contig96.17051.1|Name=mRNA_C-linearis_contig96.17051.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=3846bp|location=Sequence derived from alignment at C-linearis_contig96:535823..539256+ (Chordaria linearis ClinC8C monoicous)back to top |