Homology
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match:
D7G4B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B2_ECTSI)
HSP 1 Score: 89.0 bits (219), Expect = 2.060e-21
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1
Query: 1 SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQ 135
SGVTPLHRAAEVNSCQVAQVLINA+ASVN RT+WGWYAPLHFAL+
Sbjct: 9 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALK 53
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match:
A0A7S4A937_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A937_9STRA)
HSP 1 Score: 62.0 bits (149), Expect = 1.210e-9
Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 1
Query: 1 SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEVLLQAGAKWT--------ILTKRLRTPYDLAVSRGLKLQALRIQ 267
SG+T LHRAA+V ++ + L+ A +A+T G PLH A+ GHE+ A LL+ GA W + R TP AV +G +L A R++
Sbjct: 34 SGMTLLHRAADVAQVEIIKYLMELGADASAKTFRGGDTPLHLAVSAGHEKAAMALLEGGAPWVPSKQKPKMAVNNRGETPMRTAVRKGYQLMAQRLE 130
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match:
A0A8K1CK32_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK32_PYTOL)
HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1
Query: 10 TPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEVLLQAGAKWTILT 198
T LH AAE +A++LINA A VNAR A GW APLH A +GH +V ++L+++ A LT
Sbjct: 312 TALHLAAENGDEDIAELLINAGALVNARNAAGW-APLHIAALDGHLRVVQLLVRSRADIDSLT 373
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 2.06e-21 / Id = 91.11 Expect = 1.21e-9 / Id = 37.11 Expect = 1.04e-5 / Id = 49.21 Sequence D7G4B2_ECTSI A0A7S4A937_9STRA A0A8K1CK32_PYTOL back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 80.5 Seed ortholog evalue 4.8e-13 Seed eggNOG ortholog 4787.PITG_17027T0 Hectar predicted targeting category other localisation EggNOG free text desc. Ankyrin repeat EggNOG OGs 3QFJX@4776,COG0666@1,KOG4177@2759 Ec32 ortholog description Ankyrin repeat-containing domain Ec32 ortholog Ec-02_002030.1 COG Functional cat. M Best tax level Peronosporales Best eggNOG OG NA|NA|NA Exons 2 Model size 291 Cds size 291 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930826.1936905-CDS-C-linearis_contig96:500854..501008 1622930826.1936905-CDS-C-linearis_contig96:500854..501008 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 500855..501008 - 1690881269.8899102-CDS-C-linearis_contig96:500854..501008 1690881269.8899102-CDS-C-linearis_contig96:500854..501008 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 500855..501008 - 1622930826.206459-CDS-C-linearis_contig96:501600..501737 1622930826.206459-CDS-C-linearis_contig96:501600..501737 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 501601..501737 - 1690881269.915136-CDS-C-linearis_contig96:501600..501737 1690881269.915136-CDS-C-linearis_contig96:501600..501737 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 501601..501737 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17049.1
>prot_C-linearis_contig96.17049.1 ID=prot_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp
SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQ back to top mRNA from alignment at C-linearis_contig96:500855..501737-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17049.1 ID=mRNA_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=883bp|location=Sequence derived from alignment at C-linearis_contig96:500855..501737- (Chordaria linearis ClinC8C monoicous)AGCGGGGTCACACCTCTTCACAGAGCGGCCGAAGTCAACAGCTGCCAGGT
TGCGCAGGTACTCATCAACGCGGAGGCGAGCGTGAACGCCAGAACAGCCT
GGGGATGGTACGCCCCGTTGCACTTCGCACTACAAAA GTGAGAGAGCACA
CAGTCATCAGTAGCTTTGCCGGCAAAAATAGACCCGCGATTTCTATTGAT
TTATCGACCACCTTCTAGTTATCAGTAGAACTGTACTTTGTGTTTTGGTC
CACGCTGCGTAATCAGTCTACACTACCCTGTCACGGAGATGTGTATTTGA
TATACTATTGGGAATCTCTGTTAGTATTTGGCCTTATTACGTGGTGAAAG
CGAGGCAAAAAGTGAGTTTGTGTAGACGACCTCGCGTCAAGGGCCTCGTG
TCTTGAAGGTAAGACCACTCCTGACTCGGCGTACAATATTTTTTAACATG
CTTGTTCTGCCAGAGGTTTCCAAATTGAAATTATCGGGATAATAACCAGG
ACGCGGCGAGCAACCAAACCGTATCCGTGTACGTAAGGCCGAAAAACATA
GAATCAACATGTTTCGACGATTCCTCGCATCGCATGCCCCAACAAAGCTC
ATTCCATGCATACCCCTTCCATCCTCTTTCCCTTAAGACGTCCCTCAAAT
TAGTTCGAGGCCAAACTCGTTTGGAACCTGTCGACAAAACCGTCTTCCTC
TCAACGACTCGTGTCGACTACCCAAACAGTGGACACGAGCAAGTGGCCGA
AGTGCTACTGCAGGCAGGTGCCAAGTGGACAATACTCACAAAACGGCTTC
GGACGCCCTACGACCTGGCCGTCTCCCGCGGGTTGAAGCTCCAAGCATTG
AGAATACAGGATGTGAGACACTCCATCGCCAAA back to top Coding sequence (CDS) from alignment at C-linearis_contig96:500855..501737-
>mRNA_C-linearis_contig96.17049.1 ID=mRNA_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig96:500855..501737- (Chordaria linearis ClinC8C monoicous) back to top