mRNA_C-linearis_contig96.17049.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match: D7G4B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B2_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 2.060e-21 Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1 Query: 1 SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQ 135
SGVTPLHRAAEVNSCQVAQVLINA+ASVN RT+WGWYAPLHFAL+
Sbjct: 9 SGVTPLHRAAEVNSCQVAQVLINADASVNVRTSWGWYAPLHFALK 53
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match: A0A7S4A937_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A937_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.210e-9 Identity = 36/97 (37.11%), Postives = 52/97 (53.61%), Query Frame = 1 Query: 1 SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEVLLQAGAKWT--------ILTKRLRTPYDLAVSRGLKLQALRIQ 267
SG+T LHRAA+V ++ + L+ A +A+T G PLH A+ GHE+ A LL+ GA W + R TP AV +G +L A R++
Sbjct: 34 SGMTLLHRAADVAQVEIIKYLMELGADASAKTFRGGDTPLHLAVSAGHEKAAMALLEGGAPWVPSKQKPKMAVNNRGETPMRTAVRKGYQLMAQRLE 130
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Match: A0A8K1CK32_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CK32_PYTOL) HSP 1 Score: 52.4 bits (124), Expect = 1.040e-5 Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 1 Query: 10 TPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQVAEVLLQAGAKWTILT 198
T LH AAE +A++LINA A VNAR A GW APLH A +GH +V ++L+++ A LT
Sbjct: 312 TALHLAAENGDEDIAELLINAGALVNARNAAGW-APLHIAALDGHLRVVQLLVRSRADIDSLT 373 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17049.1 >prot_C-linearis_contig96.17049.1 ID=prot_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=97bp SGVTPLHRAAEVNSCQVAQVLINAEASVNARTAWGWYAPLHFALQNGHEQback to top mRNA from alignment at C-linearis_contig96:500855..501737- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17049.1 ID=mRNA_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=883bp|location=Sequence derived from alignment at C-linearis_contig96:500855..501737- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:500855..501737- >mRNA_C-linearis_contig96.17049.1 ID=mRNA_C-linearis_contig96.17049.1|Name=mRNA_C-linearis_contig96.17049.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at C-linearis_contig96:500855..501737- (Chordaria linearis ClinC8C monoicous)back to top |