Homology
BLAST of mRNA_C-linearis_contig96.17042.1 vs. uniprot
Match:
D7G4C0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4C0_ECTSI)
HSP 1 Score: 63.2 bits (152), Expect = 1.270e-12
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 1
Query: 1 MGPCMEDLTYKSTERLLFGPSLQTSLAPVCSPAALK 108
MGPCMEDLTYKSTERLLF PSL+TS APVC AAL+
Sbjct: 1 MGPCMEDLTYKSTERLLFDPSLRTSHAPVCHRAALE 36
BLAST of mRNA_C-linearis_contig96.17042.1 vs. uniprot
Match:
D7G4A4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G4A4_ECTSI)
HSP 1 Score: 65.9 bits (159), Expect = 1.460e-11
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = 1
Query: 1 MGPCMEDLTYKSTERLLFGPSLQTSLAPVCSPAALK 108
MGPCMEDLTYKSTERLLFGPSL+TS APVC AAL+
Sbjct: 161 MGPCMEDLTYKSTERLLFGPSLRTSHAPVCHRAALE 196
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17042.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.27e-12 / Id = 83.33 Expect = 1.46e-11 / Id = 86.11 Sequence D7G4C0_ECTSI D7G4A4_ECTSI
Match Name E-value Identity Description
D7G4C0_ECTSI 1.270e-12 83.33 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] D7G4A4_ECTSI 1.460e-11 86.11 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 67.0 Seed ortholog evalue 2e-09 Seed eggNOG ortholog 2880.D7G4A4 Hectar predicted targeting category no signal peptide or anchor EggNOG OGs 28INW@1,2S5NB@2759 Best tax level Eukaryota Best eggNOG OG NA|NA|NA Exons 2 Model size 108 Cds size 108 Stop 0 Start 1
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930825.1699271-CDS-C-linearis_contig96:441278..441313 1622930825.1699271-CDS-C-linearis_contig96:441278..441313 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 441279..441313 + 1690881269.332532-CDS-C-linearis_contig96:441278..441313 1690881269.332532-CDS-C-linearis_contig96:441278..441313 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 441279..441313 + 1622930825.1936731-CDS-C-linearis_contig96:441753..441826 1622930825.1936731-CDS-C-linearis_contig96:441753..441826 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 441754..441826 + 1690881269.3476365-CDS-C-linearis_contig96:441753..441826 1690881269.3476365-CDS-C-linearis_contig96:441753..441826 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 441754..441826 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17042.1
>prot_C-linearis_contig96.17042.1 ID=prot_C-linearis_contig96.17042.1|Name=mRNA_C-linearis_contig96.17042.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=36bp
MGPCMEDLTYKSTERLLFGPSLQTSLAPVCSPAALK back to top mRNA from alignment at C-linearis_contig96:441279..441826+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17042.1 ID=mRNA_C-linearis_contig96.17042.1|Name=mRNA_C-linearis_contig96.17042.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=548bp|location=Sequence derived from alignment at C-linearis_contig96:441279..441826+ (Chordaria linearis ClinC8C monoicous)ATGGGGCCGTGTATGGAGGACCTCACGTACAAGAG GTGAGAAGAGAGGGC
GGGACACGGGTAGAGAAGCGAAAGGGGGAGAAAGAGAGAGCGGGGAATCA
CATGCATCGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGCTGCCATATAGCTGTCG
CAGGGTGGCTCTTTGTGCTCGCTGAAGGGAGCTAGCTTGCGTGTGgctGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTACCGCGCCACCGTGTG
CAGAACATTCAACTCGAAAATCGACGATGGCACGGCTTCGAAGCAAGAGA
CTCTCGGACCACCTTTTTTGTCTCACCGGTTTTACGCTTCATTCACCCAT
GTTCAACGGCGACAACTGCCCCTTTTCCCCCGCCGGAAAAACGATGCGTC
CACATCCATGACAAATCAATCGCAGCACGGAGCGTCTCCTGTTCGGGCCG
TCGCTCCAGACAAGCCTCGCCCCGGTGTGCTCGCCCGCCGCGCTCAAG back to top Coding sequence (CDS) from alignment at C-linearis_contig96:441279..441826+
>mRNA_C-linearis_contig96.17042.1 ID=mRNA_C-linearis_contig96.17042.1|Name=mRNA_C-linearis_contig96.17042.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at C-linearis_contig96:441279..441826+ (Chordaria linearis ClinC8C monoicous) back to top