mRNA_C-linearis_contig96.17030.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17030.1
Unique NamemRNA_C-linearis_contig96.17030.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:173039..174363 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size969
Cds size969
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.8782444-CDS-C-linearis_contig96:173038..1738901622930818.8782444-CDS-C-linearis_contig96:173038..173890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 173039..173890 -
1690881265.983776-CDS-C-linearis_contig96:173038..1738901690881265.983776-CDS-C-linearis_contig96:173038..173890Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 173039..173890 -
1622930818.8926992-CDS-C-linearis_contig96:174246..1743631622930818.8926992-CDS-C-linearis_contig96:174246..174363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 174247..174363 -
1690881265.9986491-CDS-C-linearis_contig96:174246..1743631690881265.9986491-CDS-C-linearis_contig96:174246..174363Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 174247..174363 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17030.1prot_C-linearis_contig96.17030.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 173039..174363 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17030.1

>prot_C-linearis_contig96.17030.1 ID=prot_C-linearis_contig96.17030.1|Name=mRNA_C-linearis_contig96.17030.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=323bp
GNYPGRDPESPPPESFASGGGGGRKKRTPAPWGGLFKGKEDVALPTAPWS
AGSPQDGRYEEPPTPQGQYPQWQSQQFARASAAAGTAASGGGYSSIASAR
GGYGSPPPPLSGYGSSSPRPPPPPPPPPPSRRRTSPLVANAPRLTVIPAP
AKPSPVQTATTGLQQQQQQQQRGPSPRGGGAGLSKWGSWGISRGGAEAKS
NSGRSSSRKLASEPVAEKTGLLSSAARPEAVVFGGVRAGGGGGSSLPGSF
SREQSAPGGRITGGEGGEGGGARRERGSLPRSGEGFAAAGKPSPFLAARS
SLASSGKRSATRRSPLEQSAVNP
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mRNA from alignment at C-linearis_contig96:173039..174363-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17030.1 ID=mRNA_C-linearis_contig96.17030.1|Name=mRNA_C-linearis_contig96.17030.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1325bp|location=Sequence derived from alignment at C-linearis_contig96:173039..174363- (Chordaria linearis ClinC8C monoicous)
GGCAACTACCCGGGCCGAGATCCGGAGTCGCCGCCGCCGGAAAGTTTTGC
TAGTGGCGGGGGAGGGGGGCGGAAAAAGCGAACACCAGCTCCGTGGGGGG
GTCTGTTCAAGGGAAAGGTGAGGGGGCAATCAGAATGAGATCACGCTTTC
GCTCCCAGTCGTGTGTTTCCGAGGAATGTTGGTAAGTCGTTCGTCGGTTG
TGCTTGTGTCCACCGTGCGTTAGTGGGACATTGCGTATTGACAAGAAAGA
ACGTTGTAACACTGCTGTTGGGCTGCGACGCGTGGCATAGGAGTGTGATG
CATTTCCCACGGCTACATAGAAAATCAAGGTTTCTTGTAGCGATACAAGT
ACAATGGCATGCCCACCTCGGTGAAGGCATGTTCCGAAGAGCGCACGATG
GTCGTACTCCCGTCAACACTCGTACGAGGCCCTAAATCGCACAACAACCC
TCCCCTTGCTACCCGCCCAACAGGAGGACGTAGCGCTACCGACGGCGCCC
TGGTCGGCGGGATCTCCGCAAGACGGAAGGTACGAGGAGCCACCGACCCC
ACAAGGCCAGTACCCGCAGTGGCAAAGCCAGCAATTCGCCCGGGCTTCAG
CAGCAGCAGGAACAGCAGCCAGCGGCGGCGGCTACTCCAGCATTGCTTCG
GCGAGGGGTGGATACGGATCACCGCCACCACCGCTATCGGGGTACGGATC
ATCGTCACCGCGGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGAGAC
GGCGCACGTCGCCGCTGGTTGCAAACGCTCCTCGCCTGACCGTCATCCCG
GCACCGGCGAAGCCTTCACCTGTCCAGACAGCAACGACAGGGTTGCAGCA
GCAGCAGCAGCAGCAGCAGCGAGGGCCGTCGCCTAGGGGAGGAGGGGCAG
GACTATCGAAGTGGGGGTCGTGGGGCATCAGCCGCGGTGGTGCCGAAGCC
AAGAGTAACAGCGGCAGGAGCAGCAGTAGGAAGCTGGCCTCGGAGCCGGT
GGCAGAGAAGACGGGTCTACTATCTTCGGCCGCGCGGCCCGAAGCGGTGG
TTTTCGGCGGTGTTAGGGCCGGCGGCGGCGGTGGAAGTTCCCTGCCCGGC
TCTTTCTCGCGAGAACAATCAGCACCGGGAGGTAGAATCACCGGAGGCGA
AGGAGGCGAAGGAGGAGGAGCAAGAAGAGAGAGAGGAAGCCTTCCGAGGA
GCGGCGAAGGCTTTGCGGCGGCCGGAAAGCCCTCCCCGTTCCTCGCGGCT
CGCTCCTCCCTGGCCTCCTCCGGCAAGCGGAGCGCGACGCGCAGATCTCC
GCTCGAGCAGAGCGCGGTCAACCCG
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Coding sequence (CDS) from alignment at C-linearis_contig96:173039..174363-

>mRNA_C-linearis_contig96.17030.1 ID=mRNA_C-linearis_contig96.17030.1|Name=mRNA_C-linearis_contig96.17030.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1938bp|location=Sequence derived from alignment at C-linearis_contig96:173039..174363- (Chordaria linearis ClinC8C monoicous)
GGCAACTACCCGGGCCGAGATCCGGAGTCGCCGCCGCCGGAAAGTTTTGC
TAGTGGCGGGGGAGGGGGGCGGAAAAAGCGAACACCAGCTCCGTGGGGGG
GTCTGTTCAAGGGAAAGGGCAACTACCCGGGCCGAGATCCGGAGTCGCCG
CCGCCGGAAAGTTTTGCTAGTGGCGGGGGAGGGGGGCGGAAAAAGCGAAC
ACCAGCTCCGTGGGGGGGTCTGTTCAAGGGAAAGGAGGACGTAGCGCTAC
CGACGGCGCCCTGGTCGGCGGGATCTCCGCAAGACGGAAGGTACGAGGAG
CCACCGACCCCACAAGGCCAGTACCCGCAGTGGCAAAGCCAGCAATTCGC
CCGGGCTTCAGCAGCAGCAGGAACAGCAGCCAGCGGCGGCGGCTACTCCA
GCATTGCTTCGGCGAGGGGTGGATACGGATCACCGCCACCACCGCTATCG
GGGTACGGATCATCGTCACCGCGGCCGCCGCCGCCGCCGCCGCCGCCGCC
GCCGTCGAGACGGCGCACGTCGCCGCTGGTTGCAAACGCTCCTCGCCTGA
CCGTCATCCCGGCACCGGCGAAGCCTTCACCTGTCCAGACAGCAACGACA
GGGTTGCAGCAGCAGCAGCAGCAGCAGCAGCGAGGGCCGTCGCCTAGGGG
AGGAGGGGCAGGACTATCGAAGTGGGGGTCGTGGGGCATCAGCCGCGGTG
GTGCCGAAGCCAAGAGTAACAGCGGCAGGAGCAGCAGTAGGAAGCTGGCC
TCGGAGCCGGTGGCAGAGAAGACGGGTCTACTATCTTCGGCCGCGCGGCC
CGAAGCGGTGGTTTTCGGCGGTGTTAGGGCCGGCGGCGGCGGTGGAAGTT
CCCTGCCCGGCTCTTTCTCGCGAGAACAATCAGCACCGGGAGGTAGAATC
ACCGGAGGCGAAGGAGGCGAAGGAGGAGGAGCAAGAAGAGAGAGAGGAAG
CCTTCCGAGGAGCGGCGAAGGCTTTGCGGCGGCCGGAAAGCCCTCCCCGT
TCCTCGCGGCTCGCTCCTCCCTGGCCTCCTCCGGCAAGCGGAGCGCGACG
CGCAGATCTCCGCTCGAGCAGAGCGCGGTCAACCCGGAGGACGTAGCGCT
ACCGACGGCGCCCTGGTCGGCGGGATCTCCGCAAGACGGAAGGTACGAGG
AGCCACCGACCCCACAAGGCCAGTACCCGCAGTGGCAAAGCCAGCAATTC
GCCCGGGCTTCAGCAGCAGCAGGAACAGCAGCCAGCGGCGGCGGCTACTC
CAGCATTGCTTCGGCGAGGGGTGGATACGGATCACCGCCACCACCGCTAT
CGGGGTACGGATCATCGTCACCGCGGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGTCGAGACGGCGCACGTCGCCGCTGGTTGCAAACGCTCCTCGCCT
GACCGTCATCCCGGCACCGGCGAAGCCTTCACCTGTCCAGACAGCAACGA
CAGGGTTGCAGCAGCAGCAGCAGCAGCAGCAGCGAGGGCCGTCGCCTAGG
GGAGGAGGGGCAGGACTATCGAAGTGGGGGTCGTGGGGCATCAGCCGCGG
TGGTGCCGAAGCCAAGAGTAACAGCGGCAGGAGCAGCAGTAGGAAGCTGG
CCTCGGAGCCGGTGGCAGAGAAGACGGGTCTACTATCTTCGGCCGCGCGG
CCCGAAGCGGTGGTTTTCGGCGGTGTTAGGGCCGGCGGCGGCGGTGGAAG
TTCCCTGCCCGGCTCTTTCTCGCGAGAACAATCAGCACCGGGAGGTAGAA
TCACCGGAGGCGAAGGAGGCGAAGGAGGAGGAGCAAGAAGAGAGAGAGGA
AGCCTTCCGAGGAGCGGCGAAGGCTTTGCGGCGGCCGGAAAGCCCTCCCC
GTTCCTCGCGGCTCGCTCCTCCCTGGCCTCCTCCGGCAAGCGGAGCGCGA
CGCGCAGATCTCCGCTCGAGCAGAGCGCGGTCAACCCG
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