mRNA_C-linearis_contig96.17026.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17026.1
Unique NamemRNA_C-linearis_contig96.17026.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
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BLAST of mRNA_C-linearis_contig96.17026.1 vs. uniprot
Match: D7G479_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G479_ECTSI)

HSP 1 Score: 255 bits (651), Expect = 5.080e-76
Identity = 177/277 (63.90%), Postives = 189/277 (68.23%), Query Frame = 3 
Query:   84 RGRKRKRQRVSFAAGELLEEVKLFHMAKPVNPSIPPPAVDDAGEEDAASQPGLALLGLFGVESPSXXXXXXXXXXXXXXXXTASXXXXTL-VASTTSHAP----SAPNGGSQFRPAPASAPQKSEGQGXXXXXXXXXXXXGGDSGGVDGA-GTGRA-GGSKLFKGFEKTETVVRXXXXXXXXXXXXXXXXXLPPMGAGAHLTHRYPKDIWPGHKPPHHSVGVGEANGVGGEGAQEEQLEFFCDACDETIPNGVERMECAVCRDEFCLCHRCYDEGEV 893
            RGRKRKRQ VS+AA ELLEEVKLFHMAKPVNPSIPPP VDD GE DAASQPGLALLGL GVES S                 AS    ++  +STT HAP       NGG    P+  SA   S+ QG            G   GG +G   TGR  G S+LFKGFEKTETVVRXXXXXXXXXXXXXXXX +PP G G H+THRYPKDIWPGHKPP+H VG GE    G     EEQLEFFCD CDETIP+GVERMECAVC DEFCLCH CYDEGEV
Sbjct:   12 RGRKRKRQ-VSWAAAELLEEVKLFHMAKPVNPSIPPPVVDDGGE-DAASQPGLALLGLLGVESSSSLPASTSSFS------AASPSPASVDSSSTTFHAPVGGAGIVNGGDNSHPSTTSAQLPSDVQGGSFVGSSSHSGDG--PGGTEGGPATGRTVGASRLFKGFEKTETVVRXXXXXXXXXXXXXXXX-IPPSGEGEHVTHRYPKDIWPGHKPPNHIVG-GEGANDGERAGDEEQLEFFCDGCDETIPSGVERMECAVCPDEFCLCHACYDEGEV 276
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G479_ECTSI5.080e-7663.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:135103..138684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_001620.1
Exons4
Model size1908
Cds size1014
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17026.1prot_C-linearis_contig96.17026.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 135976..138634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.3948808-UTR-C-linearis_contig96:135102..1356161622930821.3948808-UTR-C-linearis_contig96:135102..135616Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 135103..135616 -
1690881267.1680791-UTR-C-linearis_contig96:135102..1356161690881267.1680791-UTR-C-linearis_contig96:135102..135616Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 135103..135616 -
1622930821.408655-UTR-C-linearis_contig96:135645..1359751622930821.408655-UTR-C-linearis_contig96:135645..135975Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 135646..135975 -
1690881267.1797726-UTR-C-linearis_contig96:135645..1359751690881267.1797726-UTR-C-linearis_contig96:135645..135975Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 135646..135975 -
1622930821.4747388-UTR-C-linearis_contig96:138634..1386841622930821.4747388-UTR-C-linearis_contig96:138634..138684Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 138635..138684 -
1690881267.2207823-UTR-C-linearis_contig96:138634..1386841690881267.2207823-UTR-C-linearis_contig96:138634..138684Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 138635..138684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930821.422758-CDS-C-linearis_contig96:135975..1363661622930821.422758-CDS-C-linearis_contig96:135975..136366Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 135976..136366 -
1690881267.190015-CDS-C-linearis_contig96:135975..1363661690881267.190015-CDS-C-linearis_contig96:135975..136366Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 135976..136366 -
1622930821.4380646-CDS-C-linearis_contig96:136950..1374801622930821.4380646-CDS-C-linearis_contig96:136950..137480Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 136951..137480 -
1690881267.2001784-CDS-C-linearis_contig96:136950..1374801690881267.2001784-CDS-C-linearis_contig96:136950..137480Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 136951..137480 -
1622930821.460362-CDS-C-linearis_contig96:138541..1386341622930821.460362-CDS-C-linearis_contig96:138541..138634Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 138542..138634 -
1690881267.2106168-CDS-C-linearis_contig96:138541..1386341690881267.2106168-CDS-C-linearis_contig96:138541..138634Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 138542..138634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17026.1

>prot_C-linearis_contig96.17026.1 ID=prot_C-linearis_contig96.17026.1|Name=mRNA_C-linearis_contig96.17026.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=338bp
MIASEAGSSGDRGRKRKRQRVSFAAGELLEEVKLFHMAKPVNPSIPPPAV
DDAGEEDAASQPGLALLGLFGVESPSPSPSPSSAVAASSSSSTASPSPST
LVASTTSHAPSAPNGGSQFRPAPASAPQKSEGQGGGGGGGGNSSSSGGDS
GGVDGAGTGRAGGSKLFKGFEKTETVVRRKKLVAPPPPPPETPPPLPPMG
AGAHLTHRYPKDIWPGHKPPHHSVGVGEANGVGGEGAQEEQLEFFCDACD
ETIPNGVERMECAVCRDEFCLCHRCYDEGEVRGTSTVISCYMLLFQLQYL
TSRLIPLVVVDSCFWRPVTYNSVEAYHSFGSCRCRDM*
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mRNA from alignment at C-linearis_contig96:135103..138684-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17026.1 ID=mRNA_C-linearis_contig96.17026.1|Name=mRNA_C-linearis_contig96.17026.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3582bp|location=Sequence derived from alignment at C-linearis_contig96:135103..138684- (Chordaria linearis ClinC8C monoicous)
CGCCGCCGCACCCGGCACAGCAGCAAACCACTAGACACTCGGTCGGTAGC
ATGATAGCTTCGGAGGCAGGCTCCTCCGGTGATAGAGGGAGGAAACGCAA
GCGTCAAAGGGTTTCCTTTGCCGCCGGAGAGTTGCTTGAAGAGGTGAGTG
ACGACTAGTCAGTCTACAAGTAGGCGTTTTCAAATCGGCGCACGCCTCCC
CCTACAACTACATCCTTGCGGCAGGCTTAGTAAAACACAGTAGGCATTAG
AGCGCGCCAAGCAAGGGTTGGGTACTAGATACAAACAAGTAGTTCGCTTA
TATTTGTTTCTCGCGAATCTCATTTATGCTACGCGCAATGTTGATGTTCC
CGAACGGGTGACTTGGGAGAGGTATTGAGATGTGGAGACACCTAGTCTAC
TGCTGCCTGTACAACACGAGTAGTGACCAAAGACAACCAATTCTCTACCC
CTGCTACTTACATTTTTTTTTACAGTCAGCGGCACCTATATACCGTGTGG
GTTGGGAGTCTAATTTATTCCGGTATTTGTTACAATTTCTTTGCGCAGTT
TGCACTCTAAATATTTGTACACACATCTAAGGTTTTGGTCGCTTCGCGCC
CCCGCTCCATTGGAAAAGCGATTCCAAGGCAATGTTCAATGCATACAGAG
CTGCTGGTGTCGGAACGCACGGGAAGCGGAACTGCCGCGGGGTATGGTCG
AATTTCGGAAGAGAGAAAAGATGGAATAGAGCTCTCACAGACGTAACAAC
GGAGCAATCCTAGAGAAAAGACAAATTGTGAGAGGACTCCTTGGTACACC
TATAGACTAGGGTGCTTTGGGCGCGCTTAAGGAGGGGGTAGGGTGGGCAC
ACATTCGTACATACAGAGTCCGCCGTAGAAGGGAGGTATTGCTGATGTGT
TAAAGCTGTCTTGTGTTGTGCGATTGAATCGACAACACCGCGTGTCTCTT
CTACGGGCGTCAATGCCGGTACACTAAACTGACAAATACGAAATCAGCTC
AGTGCCCGTGCCACCTTTTCCTCAATGGCAGGTATGGTGCACATTGCTCA
ATACTTGTTTTCCTCTATCTAAGCTGGTAGTCACGCACGCATGCAAAGGC
CATCTGCGTCCCGTGCGGGCACGGTATGCACGCAGCAGTATTGATTTCTC
CAGCATCAGATGGGATGCCAAGGACGACCACCCCCAACCCCTTGCATCAT
ACAGGTGAAGCTGTTCCACATGGCCAAACCCGTAAATCCGTCAATACCAC
CTCCCGCGGTGGACGACGCTGGAGAGGAAGACGCTGCTAGTCAACCAGGA
CTCGCGCTCCTCGGTCTGTTCGGGGTGGAGTCACCATCACCATCACCATC
ACCCTCATCCGCAGTAGCGGCGTCATCGTCATCGTCAACGGCGTCGCCCT
CTCCGTCCACTCTTGTTGCCTCCACCACCTCTCACGCTCCCAGTGCACCC
AACGGAGGGAGTCAGTTCCGACCAGCGCCCGCTTCTGCACCACAAAAGTC
GGAAGGGCAAGGCGGGGGAGGAGGAGGCGGTGGCAACAGTAGTAGCAGCG
GGGGAGATAGTGGTGGAGTGGATGGGGCAGGGACCGGCCGTGCAGGAGGA
AGCAAGCTCTTTAAAGGATTCGAAAAAACGGAGACGGTGGTGAGGAGGAA
AAAGCTCGTGGCGCCCCCACCCCCACCGCCCGAAACGCCTCCGCCGTTGC
CCCCAATGGGCGCAGGCGCGCATTTGACGCATCGGTGAGAGAGACAGAGC
GAGAGGAGAGATGCTTGCAGAGTGTGGCGTGAAAACTGCTGTGTACTCTC
GCGCCCTTAGCACGATAGGTTCCCACTTACTGTACCACCATACATTTGTA
TTTCAGCAGAGTCGTTCTGCCGAAACCCACGGGTAAGGATTTCACCCCGT
GCTTCAAGAACTACGGCAGATAGCGCCTTGTCACAAACGTGCCAAACCAG
CGAGCCGAGACATTCCACGGTGCTTTGGCTAGTGGGCGCGGTTGAAAAGA
GAATACGCGTGCTGAAACAATGGACGCATCGCACATTGGTCCACTTCTTG
TGGCGAAGGTGTCATATCATTCGCGTGCCGGAGCAGCTCCAATGACTGAT
AGCTTTCAAACATATCACACTTCGCCCCAGCAATGTTAATTTGTTCTTGA
ATCGAATGCCCGTGCCCTTGATTGACCCTTGACAGAGTACAGCGCTTTTC
TCGCAATGTCGCGCACATACCCGCGTACCCACATACCTTGCACAGCCCGA
CTAATTTTCCAGCACCTTTCCGCGACTTCGAATCCTGACGGATTGTCATT
CATTTTCCCTCCTCACAGGTACCCGAAAGATATTTGGCCGGGGCACAAAC
CCCCACATCATTCTGTCGGGGTCGGGGAGGCAAATGGGGTCGGAGGCGAG
GGGGCGCAGGAAGAACAGTTGGAGTTTTTTTGTGACGCCTGCGATGAGAC
TATCCCCAACGGTGTCGAGCGCATGGAGTGCGCGGTCTGTCGAGATGAAT
TCTGTTTGTGTCATCGTTGCTACGACGAGGGAGAGGTACGCGGTACTTCT
ACTGTCATAAGTTGCTACATGCTGCTGTTTCAACTCCAGTATCTGACGTC
AAGATTGATACCGCTTGTTGTGGTAGACTCCTGCTTTTGGAGACCCGTAA
CCTATAACTCTGTCGAGGCGTACCACAGCTTTGGATCGTGTCGGTGTCGT
GACATGTGATATGACAGAAAAATCTCTGTCTGTCAGCCGTGTGCAGAGTA
GCTCCAAACGACGATATGGATCGATCGATCGACCGACCGCTGGATCGATG
ACTCTCGTTGGAATCTCCTCGCTACTCTGTGGCTTGCGTTTTGTTGGCAG
CGGCACCTGGCAAGCACACCGCCGTGCTAGTCGATCATTCCGTCTCGGAT
GTACTGTTGCTGTGCTCATTTATCTCCCAGTCGTTGCGGTCTTGCCCACG
CACTCGGAATAGTTGACCTTCGATTTGGGCTGACTAAGCTATGAACTGGC
CATTTTCTCGATGAAAGTAGTGTACCGATCGTATCCTCCTTTGCATTCGT
TTTTGTCTCCTCGCAGGTCCTGGACAAGAGGCACAAGCACGAGCTTCTCC
CCTCCGCAGCTCCGTTTCACATTACGCGATCTGCCACCAGCGCAGAGGCT
GCGCTAGAGGCAGCTAAAGCTCTACACGTCACGGAAGCTCAGGGTGGGGA
GGGGGTACCCTATGATGATGACGATCTGGGTTAACCGTTCTCCGCGCCGT
TCTAAGATAGTTGCTCGTGGCGGGCTTCTTGTGGAAAATTATCTTGTCAC
TTTGGTGATCATCTTCCAAGCAGCACCGATGCATTTCCACTTGCCGAGTA
TCAAGCATTGAAGTCGGTAGTAGTGGTTGTACTGCGTGTAAGGTGCCCCG
TCGTACTGGGCTTGCTGTGTGGTTTCATGTAGCGACCGACGTCAAGGAAT
TTCGCTGCAGCGGACGTCCTCTTCACCTCAGACTTCAGCAGTAATAAACG
CGGTTTCAAGTATCGAGCGTTTTTCAAGAGTATTTTTATTGATTTTTGCA
GTCCGCCTCTAACTTGCCCAGAAATAAACAAA
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Coding sequence (CDS) from alignment at C-linearis_contig96:135103..138684-

>mRNA_C-linearis_contig96.17026.1 ID=mRNA_C-linearis_contig96.17026.1|Name=mRNA_C-linearis_contig96.17026.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2028bp|location=Sequence derived from alignment at C-linearis_contig96:135103..138684- (Chordaria linearis ClinC8C monoicous)
ATGATAGCTTCGGAGGCAGGCTCCTCCGGTGATAGAGGGAGGAAACGCAA
GCGTCAAAGGGTTTCCTTTGCCGCCGGAGAGTTGCTTGAAGAGATGATAG
CTTCGGAGGCAGGCTCCTCCGGTGATAGAGGGAGGAAACGCAAGCGTCAA
AGGGTTTCCTTTGCCGCCGGAGAGTTGCTTGAAGAGGTGAAGCTGTTCCA
CATGGCCAAACCCGTAAATCCGTCAATACCACCTCCCGCGGTGGACGACG
CTGGAGAGGAAGACGCTGCTAGTCAACCAGGACTCGCGCTCCTCGGTCTG
TTCGGGGTGGAGTCACCATCACCATCACCATCACCCTCATCCGCAGTAGC
GGCGTCATCGTCATCGTCAACGGCGTCGCCCTCTCCGTCCACTCTTGTTG
CCTCCACCACCTCTCACGCTCCCAGTGCACCCAACGGAGGGAGTCAGTTC
CGACCAGCGCCCGCTTCTGCACCACAAAAGTCGGAAGGGCAAGGCGGGGG
AGGAGGAGGCGGTGGCAACAGTAGTAGCAGCGGGGGAGATAGTGGTGGAG
TGGATGGGGCAGGGACCGGCCGTGCAGGAGGAAGCAAGCTCTTTAAAGGA
TTCGAAAAAACGGAGACGGTGGTGAGGAGGAAAAAGCTCGTGGCGCCCCC
ACCCCCACCGCCCGAAACGCCTCCGCCGTTGCCCCCAATGGGCGCAGGCG
CGCATTTGACGCATCGGTGAAGCTGTTCCACATGGCCAAACCCGTAAATC
CGTCAATACCACCTCCCGCGGTGGACGACGCTGGAGAGGAAGACGCTGCT
AGTCAACCAGGACTCGCGCTCCTCGGTCTGTTCGGGGTGGAGTCACCATC
ACCATCACCATCACCCTCATCCGCAGTAGCGGCGTCATCGTCATCGTCAA
CGGCGTCGCCCTCTCCGTCCACTCTTGTTGCCTCCACCACCTCTCACGCT
CCCAGTGCACCCAACGGAGGGAGTCAGTTCCGACCAGCGCCCGCTTCTGC
ACCACAAAAGTCGGAAGGGCAAGGCGGGGGAGGAGGAGGCGGTGGCAACA
GTAGTAGCAGCGGGGGAGATAGTGGTGGAGTGGATGGGGCAGGGACCGGC
CGTGCAGGAGGAAGCAAGCTCTTTAAAGGATTCGAAAAAACGGAGACGGT
GGTGAGGAGGAAAAAGCTCGTGGCGCCCCCACCCCCACCGCCCGAAACGC
CTCCGCCGTTGCCCCCAATGGGCGCAGGCGCGCATTTGACGCATCGGTAC
CCGAAAGATATTTGGCCGGGGCACAAACCCCCACATCATTCTGTCGGGGT
CGGGGAGGCAAATGGGGTCGGAGGCGAGGGGGCGCAGGAAGAACAGTTGG
AGTTTTTTTGTGACGCCTGCGATGAGACTATCCCCAACGGTGTCGAGCGC
ATGGAGTGCGCGGTCTGTCGAGATGAATTCTGTTTGTGTCATCGTTGCTA
CGACGAGGGAGAGGTACGCGGTACTTCTACTGTCATAAGTTGCTACATGC
TGCTGTTTCAACTCCAGTATCTGACGTCAAGATTGATACCGCTTGTTGTG
GTAGACTCCTGCTTTTGGAGACCCGTAACCTATAACTCTGTCGAGGCGTA
CCACAGCTTTGGATCGTGTCGGTGTCGTGACATGTGAGTACCCGAAAGAT
ATTTGGCCGGGGCACAAACCCCCACATCATTCTGTCGGGGTCGGGGAGGC
AAATGGGGTCGGAGGCGAGGGGGCGCAGGAAGAACAGTTGGAGTTTTTTT
GTGACGCCTGCGATGAGACTATCCCCAACGGTGTCGAGCGCATGGAGTGC
GCGGTCTGTCGAGATGAATTCTGTTTGTGTCATCGTTGCTACGACGAGGG
AGAGGTACGCGGTACTTCTACTGTCATAAGTTGCTACATGCTGCTGTTTC
AACTCCAGTATCTGACGTCAAGATTGATACCGCTTGTTGTGGTAGACTCC
TGCTTTTGGAGACCCGTAACCTATAACTCTGTCGAGGCGTACCACAGCTT
TGGATCGTGTCGGTGTCGTGACATGTGA
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