Homology
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
D7G473_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G473_ECTSI)
HSP 1 Score: 479 bits (1232), Expect = 3.480e-169
Identity = 241/246 (97.97%), Postives = 244/246 (99.19%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKK-KSKD 816
AKVVVEPHRHEGVFIARGKEDALCTLNS+PGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGP+GCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVV+ALYRP KK KSKD
Sbjct: 5 AKVVVEPHRHEGVFIARGKEDALCTLNSSPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPSGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 250
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
A0A835Z838_9STRA (Fibrillarin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z838_9STRA)
HSP 1 Score: 432 bits (1111), Expect = 8.290e-151
Identity = 213/243 (87.65%), Postives = 227/243 (93.42%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKS 810
AKVVVEPHRHEGVFIAR KEDALCTLNS PGKAVYGEKLISV+ PP+ DG T+KIEYRVWNPFRSK+AAAILGG + I + PG+KVLYLGAAAGT+VSHV+DIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVD VFADVAQPDQARIVALNSHYFLKNGGHCVIS+KASCVDSTA+PEAVFAQEVSKL++E FKP EQ+TLEPYERDHAVVVA YR AKK
Sbjct: 5 AKVVVEPHRHEGVFIARSKEDALCTLNSTPGKAVYGEKLISVDGPPTADGATTKIEYRVWNPFRSKIAAAILGGTENIWMAPGSKVLYLGAAAGTSVSHVSDIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDCVFADVAQPDQARIVALNSHYFLKNGGHCVISVKASCVDSTAAPEAVFAQEVSKLRSEGFKPLEQLTLEPYERDHAVVVAEYRAAKKSK 247
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
B8CBC2_THAPS (Uncharacterized protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CBC2_THAPS)
HSP 1 Score: 414 bits (1065), Expect = 6.330e-143
Identity = 201/245 (82.04%), Postives = 224/245 (91.43%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSKD 816
+KVV+EPHRHEGVFIARGKEDAL TLNS PG AVYGEK ISVE PP DG T+K+EYRVWNPFRSK+AAAILGGVD I I PG+KVLYLGAAAGT+VSHV+DIVGP G VYAVEF+HRPGRDL+N+AK+RTNVIPIIEDARHPLKYRMLVGMVD VFAD+AQPDQARIVALNSHYFLKNGGH VI+IKASC+DSTA+PEAVF +EVSKL++ENFKP EQ+TLEPYERDH V++A YRP+KKK D
Sbjct: 59 SKVVIEPHRHEGVFIARGKEDALVTLNSTPGVAVYGEKRISVETPPGPDGNTTKVEYRVWNPFRSKIAAAILGGVDNIWIKPGSKVLYLGAAAGTSVSHVSDIVGPKGAVYAVEFSHRPGRDLLNVAKARTNVIPIIEDARHPLKYRMLVGMVDCVFADIAQPDQARIVALNSHYFLKNGGHSVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHCVLIAQYRPSKKKKSD 303
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
A0A6S9GIT5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GIT5_HETAK)
HSP 1 Score: 412 bits (1058), Expect = 1.040e-142
Identity = 202/243 (83.13%), Postives = 219/243 (90.12%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKS 810
AKV++EPHRHEGVFIARGKEDAL TLNS PGK VYGEK + V+ PP DG T+K+EYRVWNPFRSKLAAAILGGVD I + PG+KV+YLGAAAGTTVSHV+DIVGP G VYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVD VFADVAQPDQARIVALNSHYFLKNGGH V+SIKASC+DSTAS EAVFA+EV KL+ E F+P+EQ+TLEPYERDHAVVVA YR KKK
Sbjct: 5 AKVIIEPHRHEGVFIARGKEDALVTLNSTPGKDVYGEKRVQVDGPPGPDGNTTKLEYRVWNPFRSKLAAAILGGVDNIWMKPGSKVMYLGAAAGTTVSHVSDIVGPTGAVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDCVFADVAQPDQARIVALNSHYFLKNGGHAVVSIKASCIDSTASAEAVFAREVKKLQDEQFRPQEQLTLEPYERDHAVVVATYRQPKKKK 247
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
A0A7S2UWV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWV2_9STRA)
HSP 1 Score: 412 bits (1060), Expect = 1.210e-142
Identity = 204/243 (83.95%), Postives = 217/243 (89.30%), Query Frame = 1
Query: 85 KVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSK 813
KVV+EPHRHEGVFIAR KEDAL TLNS PGK VYGEK I V+ PP DG T+KIEYRVWNPFRSKLAAA+LGGVD I + PGAKVLYLGAAAGTTVSHV+DIVGP G VYAVEFAHRPGRDLINMAK+RTNVIPIIEDARHPLKYRMLV MVDT+FADVAQPDQARIVALN+HYFLKNGGH VISIKASC+DSTA PEAVFA+EV KL+TE FKP EQ+TLEPYERDHAVVV YRP KK K
Sbjct: 28 KVVIEPHRHEGVFIARSKEDALVTLNSTPGKDVYGEKRIQVDGPPGPDGNTTKIEYRVWNPFRSKLAAAVLGGVDNIWMAPGAKVLYLGAAAGTTVSHVSDIVGPQGAVYAVEFAHRPGRDLINMAKARTNVIPIIEDARHPLKYRMLVPMVDTIFADVAQPDQARIVALNAHYFLKNGGHFVISIKASCIDSTAPPEAVFAREVKKLQTEQFKPAEQLTLEPYERDHAVVVGAYRPPKKAKK 270
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
A0A7S0CDH6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDH6_9STRA)
HSP 1 Score: 413 bits (1062), Expect = 4.360e-142
Identity = 201/244 (82.38%), Postives = 221/244 (90.57%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSK 813
AKV+VEPHRHEG+F+ARGKEDAL TLNS PG AVYGEK ISV+ PP DG +K+EYRVWNPFRSKLAAA+LGGVD I I PG KVLYLGAAAGT+VSHV+DIVGP G VYAVEF+HRPGRDLINMAKSRTNVIPIIEDARHPLKYRML+GMVDTVFADVAQPDQARIVALNS YFLKN GHCVIS+KASC+DSTA+PEAVF +EVSKL+ ENF+P EQ+TLEPYERDHAVV+A +RP KKK K
Sbjct: 82 AKVIVEPHRHEGIFVARGKEDALVTLNSTPGAAVYGEKRISVDGPPGADGNATKVEYRVWNPFRSKLAAAVLGGVDNIWIKPGYKVLYLGAAAGTSVSHVSDIVGPTGSVYAVEFSHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLIGMVDTVFADVAQPDQARIVALNSSYFLKNKGHCVISVKASCIDSTAAPEAVFRREVSKLQAENFRPLEQLTLEPYERDHAVVIAQFRPDKKKKK 325
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
A0A8J2T0A1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0A1_9STRA)
HSP 1 Score: 408 bits (1048), Expect = 1.770e-140
Identity = 202/241 (83.82%), Postives = 218/241 (90.46%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKK 804
AKVVVEPHRHEGVFIARGKED + TLNS PGK VYGEK ISV+ P +EDGTT+KIEYRVWNPFRSKL AAILGGVD IH+ PG+KVLYLG AAGTTVSHV+D+VGP GCVYAVEF+HRPGRDLINMAK RTNVIPIIEDARHPLKYRMLVGMVD VFADVAQPDQARIVALNS YFLK GG V+SIKASC+DSTA+PEAVFA EV+KL+ + FKPKEQ+TLEPYERDHAVVV LYRP KK
Sbjct: 55 AKVVVEPHRHEGVFIARGKEDVIVTLNSTPGKDVYGEKRISVDGPANEDGTTTKIEYRVWNPFRSKLCAAILGGVDTIHMKPGSKVLYLGGAAGTTVSHVSDLVGPQGCVYAVEFSHRPGRDLINMAKHRTNVIPIIEDARHPLKYRMLVGMVDCVFADVAQPDQARIVALNSQYFLKAGGGFVVSIKASCIDSTATPEAVFAAEVAKLQKDQFKPKEQLTLEPYERDHAVVVGLYRPPKK 295
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
A0A7S2KUE1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KUE1_9STRA)
HSP 1 Score: 409 bits (1051), Expect = 1.910e-140
Identity = 201/243 (82.72%), Postives = 220/243 (90.53%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKS 810
AKVV+EPHRHEGVFIARGKEDAL TLNS PG AVYGEK ISVE+PP DG + K+EYRVWNPFRSK+AAAILGGVD I I PG+KVLYLGAAAGT+VSHV+DIVGP G VYAVEF+HRPGRDL+N+AK RTNVIPIIEDARHPLKYRMLVGMVD VFADVAQPDQARIVALNSHYFLKNGGH VISIKASC+DSTA+PEAVF +EVSKL +ENFKP EQ+TLEPYERDH V+++ YRP KKK
Sbjct: 82 AKVVIEPHRHEGVFIARGKEDALVTLNSTPGVAVYGEKRISVESPPGPDGNSVKVEYRVWNPFRSKIAAAILGGVDNIWIKPGSKVLYLGAAAGTSVSHVSDIVGPKGNVYAVEFSHRPGRDLLNVAKGRTNVIPIIEDARHPLKYRMLVGMVDVVFADVAQPDQARIVALNSHYFLKNGGHSVISIKASCIDSTAAPEAVFRREVSKLTSENFKPLEQLTLEPYERDHCVLISQYRPTKKKK 324
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
I2CQX8_NANGC (rRNA 2'-O-methyltransferase fibrillarin (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CQX8_NANGC)
HSP 1 Score: 406 bits (1043), Expect = 2.210e-140
Identity = 199/244 (81.56%), Postives = 217/244 (88.93%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSK 813
AKV++E HRHEGVFIAR KEDAL TLNS PGK VYGEK I VE PP +G +K+EYRVWNPFRSKLAAAILGGVD I + PG+KVLYLGAA+GTTVSHV+DIVGP GCVYAVEF+HRPGRDLINMAK RTNVIPI+EDARHPLKYRMLVGMVDT+FADVAQPDQARIV+LNSHYFLKNGGH VISIKASC+DSTA+PEAVF +EV KL+ E FKP EQ+TLEPYERDHAVVVA YRPA K K
Sbjct: 9 AKVIIEAHRHEGVFIARSKEDALVTLNSTPGKDVYGEKRIQVEGPPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 252
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match:
A0A1Z5KF33_FISSO (rRNA 2'-O-methyltransferase fibrillarin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF33_FISSO)
HSP 1 Score: 407 bits (1046), Expect = 6.960e-140
Identity = 200/243 (82.30%), Postives = 221/243 (90.95%), Query Frame = 1
Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTS-KIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKK 807
AKV+VEPHRHEGVF+ARGKEDAL TLNS PG AVYGEK ISVE PP + T + K+EYRVWNPFRSKLAAA+LGGVD I I PG+KVLY+GAAAGT+VSHV+DIVGP G VYAVEF+HRPGRDL++MAK RTNVIPIIEDARHPLKYRML+GMVDTVFADVAQPDQARIVALNSHYFLKNGGH VI++KASC+DSTASPEAVFA+EV KL+ ENFKP EQ+TLEPYERDHAVV+A YRP KKK
Sbjct: 72 AKVIVEPHRHEGVFVARGKEDALVTLNSTPGIAVYGEKRISVEVPPKDGETVAQKVEYRVWNPFRSKLAAAVLGGVDNIWIAPGSKVLYIGAAAGTSVSHVSDIVGPQGAVYAVEFSHRPGRDLLSMAKQRTNVIPIIEDARHPLKYRMLIGMVDTVFADVAQPDQARIVALNSHYFLKNGGHAVIAVKASCIDSTASPEAVFAREVQKLQAENFKPLEQLTLEPYERDHAVVIAEYRPNKKK 314
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 25
0 1 Expect = 3.48e-169 / Id = 97.97 Expect = 8.29e-151 / Id = 87.65 Expect = 6.33e-143 / Id = 82.04 Expect = 1.04e-142 / Id = 83.13 Expect = 1.21e-142 / Id = 83.95 Expect = 4.36e-142 / Id = 82.38 Expect = 1.77e-140 / Id = 83.82 Expect = 1.91e-140 / Id = 82.72 Expect = 2.21e-140 / Id = 81.56 Expect = 6.96e-140 / Id = 82.30 Sequence D7G473_ECTSI A0A835Z838_9STRA B8CBC2_THAPS A0A6S9GIT5_HETAK A0A7S2UWV2_9STRA A0A7S0CDH6_9STRA A0A8J2T0A1_9STRA A0A7S2KUE1_9STRA I2CQX8_NANGC A0A1Z5KF33_FISSO
Pages
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota
Seed ortholog score 487.3
Seed ortholog evalue 4.4e-135
Seed eggNOG ortholog 2880.D7G473
KEGG ko ko:K14563
KEGG Pathway ko03008,map03008
Hectar predicted targeting category other localisation
GOs GO:0000154,GO:0000494,GO:0001510,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005732,GO:0006139,GO:0006325,GO:0006364,GO:0006396,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008213,GO:0008276,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0015030,GO:0016043,GO:0016070,GO:0016072,GO:0016074,GO:0016569,GO:0016570,GO:0016571,GO:0016604,GO:0016740,GO:0016741,GO:0018364,GO:0019538,GO:0022613,GO:0030684,GO:0031123,GO:0031126,GO:0031167,GO:0031428,GO:0031974,GO:0031981,GO:0032040,GO:0032259,GO:0032991,GO:0033967,GO:0034470,GO:0034641,GO:0034660,GO:0034963,GO:0036009,GO:0036211,GO:0042054,GO:0042254,GO:0043144,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043628,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0046483,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0140096,GO:0140098,GO:0140102,GO:1901360,GO:1901363,GO:1901564,GO:1990258,GO:1990259,GO:1990904
EggNOG free text desc. ubiE/COQ5 methyltransferase family
EggNOG OGs COG1889@1,KOG1596@2759
Ec32 ortholog description S-adenosyl-L-methionine-dependent methyltransferase
Ec32 ortholog Ec-02_001530.1
COG Functional cat. J
Best tax level Eukaryota
Best eggNOG OG NA|NA|NA
BRITE ko00000,ko00001,ko01000,ko03009
Exons 5
Model size 984
Cds size 753
Stop 1
Start 1
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930819.8184052-UTR-C-linearis_contig96:60629..60791 1622930819.8184052-UTR-C-linearis_contig96:60629..60791 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 60630..60791 -
1690881266.3562825-UTR-C-linearis_contig96:60629..60791 1690881266.3562825-UTR-C-linearis_contig96:60629..60791 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 60630..60791 -
1622930819.9115143-UTR-C-linearis_contig96:63586..63655 1622930819.9115143-UTR-C-linearis_contig96:63586..63655 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 63587..63655 -
1690881266.420726-UTR-C-linearis_contig96:63586..63655 1690881266.420726-UTR-C-linearis_contig96:63586..63655 Chordaria linearis ClinC8C monoicous UTR C-linearis_contig96 63587..63655 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930819.837228-CDS-C-linearis_contig96:60791..60917 1622930819.837228-CDS-C-linearis_contig96:60791..60917 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 60792..60917 -
1690881266.3687851-CDS-C-linearis_contig96:60791..60917 1690881266.3687851-CDS-C-linearis_contig96:60791..60917 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 60792..60917 -
1622930819.8571248-CDS-C-linearis_contig96:61574..61694 1622930819.8571248-CDS-C-linearis_contig96:61574..61694 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 61575..61694 -
1690881266.3787394-CDS-C-linearis_contig96:61574..61694 1690881266.3787394-CDS-C-linearis_contig96:61574..61694 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 61575..61694 -
1622930819.8700798-CDS-C-linearis_contig96:61952..62192 1622930819.8700798-CDS-C-linearis_contig96:61952..62192 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 61953..62192 -
1690881266.3911812-CDS-C-linearis_contig96:61952..62192 1690881266.3911812-CDS-C-linearis_contig96:61952..62192 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 61953..62192 -
1622930819.8837779-CDS-C-linearis_contig96:62483..62642 1622930819.8837779-CDS-C-linearis_contig96:62483..62642 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 62484..62642 -
1690881266.400849-CDS-C-linearis_contig96:62483..62642 1690881266.400849-CDS-C-linearis_contig96:62483..62642 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 62484..62642 -
1622930819.8988698-CDS-C-linearis_contig96:63478..63586 1622930819.8988698-CDS-C-linearis_contig96:63478..63586 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 63479..63586 -
1690881266.4107995-CDS-C-linearis_contig96:63478..63586 1690881266.4107995-CDS-C-linearis_contig96:63478..63586 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig96 63479..63586 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17015.1
>prot_C-linearis_contig96.17015.1 ID=prot_C-linearis_contig96.17015.1|Name=mRNA_C-linearis_contig96.17015.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=251bp
MKGGAKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPP SEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTT VSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKY RMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTA SPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSKDT * back to top mRNA from alignment at C-linearis_contig96:60630..63655-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17015.1 ID=mRNA_C-linearis_contig96.17015.1|Name=mRNA_C-linearis_contig96.17015.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3026bp|location=Sequence derived from alignment at C-linearis_contig96:60630..63655- (Chordaria linearis ClinC8C monoicous)GGTGGAGGGCGTGGAGGGGGCCGGGGTGGGGGCCGGGGTGGAGGCCGCGG
CGGTGGTCGTGGAGGCGGG ATGAAAGGAGGTGCCAAGGTTGTAGTGGAGC
CGCATAGGCACGAGGGCGTTTTCATCGCAAGAGGAAAGGAGGACGCGCTT
TGCACTCTCAACAGTGCTCCCGGCAAG GTCAGTTTGTAGCATTGTGTACC
CATCCACGGCACTACGGGCGTCCGTTTAGTACGCTCCCTGCCTGCCGTAG
AACTTGGGCTACATCCTCCGCTTCCCTTGTTCCTCTGAGTTGACGGCAAT
TTCAATACTGCTGTAGAGTTGAACTACTCTGAACCGCCAATTTCTCCGAA
CCACCCATGCGTAAGTTCGGGTAATCGAAAGATGCTTTTGACATGAGTCA
TGGTGCGATATGTGGTTACTTTGTTTCTTTAGCGGCACCCCGCTTGGCTC
AACGCCACGATGAAGTGGTTTATGTATGCACGCACAAGCTAGTGTTTGCA
GCCCGGCTTCGTCTTCACTGACTGAAACATTGGTGTCGGAAACACAGGGT
CAGATGGCATTTCATGGTCCTTCGTCTATTGTTCGACTTTACAGCATTAC
ACGAACCGGCACAGACACGGACACACGCTACCTGCGCACCCGAAGTCTAG
CTGTTATGGTCGCCATTCAAGGATCTTATGGACGGCAGGCCTCGAATGTC
CGAAGGACTGCTGTGTGTGTGTTTTACGCAAACCAGTGGCGTAGCCGACA
ATGGTGCTATAGCCCCTGATTTGCAAGCCTGATGGCGATGACCGATTGAT
GCCAACCATGGGCTAACCATGCTCGGTGGTATTTATGTATGCAATCCTCG
AGCGACCCGTTTCTCTGGAGTGCGTTGATCAAATCGTTCTGTTATTCTCA
GCCTTCTACAAACCAGCTGGGCTGGAATATGCACTTCCCACAAATCTACG
CCAATTCCGTCGTACATACGTACGTCCTGCTGACTCGCTCCTTCCCCTGG
CTGGAACACGCAGGCTGTGTACGGGGAGAAGCTGATATCGGTGGAGGCCC
CACCAAGCGAGGATGGCACAACGTCGAAGATCGAGTACCGCGTGTGGAAT
CCCTTCCGGTCCAAGCTTGCGGCTGCCATTCTCGGAGGAGTCGACGGTAT
CCACATTGTGCCGGGCGCGAAG GTGAAGACGTTGCGTTTTTTGAGAGTTT
CCTCTGTACAACAAAATTATTGGTAAACCATTGCTCGTATTTCCTAGTTA
TTGATGAGGTTGCCAACTGCCAAGCCCACGATCAGATCGATGCACTTCAG
ATTCCCCATCCCCAAGACATTGTGTTCGTGTCCCTCACATCTTGCAGCGA
GATGTCATGTGGTTATGCCACGGGGACGGCTACAGAGTTCGTACGCGTTG
CTCAAGTATAGCCGCCATGGACGAAGACCAATAGTTCCTCTCCAATAATT
CATGTTGCAACAGGTGCTCTACCTTGGTGCAGCTGCCGGTACGACCGTGT
CGCATGTTGCGGACATCGTAGGGCCTGCGGGGTGTGTGTACGCGGTGGAG
TTTGCTCACCGGCCCGGGCGAGACCTCATCAACATGGCCAAGTCGCGCAC
CAACGTGATCCCCATCATTGAGGATGCACGACACCCCCTAAAGTACCGGA
TGCTTGTGGGCATGGTGGACACCGTTTTCGCCGACGTTGCCCAGCCGGAT
CAG GTGCGATACATCTGCACTTGGTGTACCAATAGCAGGTGCAGCCATTA
GTTGTGACTGTCCGAGATAAGTCTTTGCCCTGCGTTGGAACGCCGGCGTA
GTTGGTGACGTGGACTCCTTCTGCGTATCGCATATGTTCATACGTCCGAA
CTAGTGGGTTGTTTGGTTTGACAAGATCACTAGGCATGGCACGAGAGCTC
CCAGCGCTAATTTCGCTTGCACGAAACGTTGTCGACCCGCGTGTTTTTGC
TTTCATTTTAGGCACGCATCGTGGCGCTGAACTCGCACTATTTCCTCAAA
AATGGAGGGCACTGCGTCATTTCGATCAAGGCGTCATGCGTCGACTCGAC
GGCATCACCGGAGGCTGTGTTCGCCCAGGAG GTACGATGAATCTTCGACT
TATACCCCGTCGACATTTTACTATTTTTCTCTTTTCGACTCTCGATGCTC
GCTTGACATTCGCAAGTGGTGCTCCCGGCTTGAAGATATCATGTAAGCTT
TTGTTATGAGCGCCTGTGTGTGTGTGTGTTTTCGTCCCATTTATTTTGGC
GACAGTCCCTTCCCGATCAAGGCGAGACGTGTACTGCACTTGTTCAGTGT
ATTTTTCTGTACAACTATAACCACTAGAACCAACCGGGGTCACACAGGAG
GGGGTAAACACTAGGGCTTTTTTCCTTTTTTTCTTTATCTTTTTTGCCCC
ACCTTCCTCCTGCGGTGCTTGCTTCGGATTTTATCGCGAGAAGGGTGCAG
CCATCCCATTCTCTCGTCAATGTGCTAAGTCGAAGTTTGGTACTCACGAG
CTTTTTCAGCTATGTTATCGCTTTCACCGGCAAAGTCGCAAAATAATCAC
CTTTGCTTGGAATTGAACTCCAGACTTTGCTGCTAGTGGGTTCGAGGTTA
AACCACTAGGCCACCGGGGCGACCGGCTGTGTGTAGTAACCACGAAATGC
TGGTGCGTTGAAACTGCATGAAGCTGCGCACGTGCTGTGTTGTTGCGTTG
AACCCGATGTCGTGACGTTGCGTCGTGCTTTCTCACAGGTTTCCAAGCTG
AAGACGGAAAACTTCAAGCCCAAGGAGCAAGTAACCCTAGAGCCCTACGA
GCGTGACCACGCAGTAGTTGTTGCGCTGTACCGCCCTGCGAAGAAGAAAT
CGAAAGACACATGA GATGCGGCGGATTGATATATACGTTAATATGCGGGT
TGAAAGATGTGAGTTGCACGATAGTAGAGCCGGTCGCCCCGGTGGCCTAG
TGGTTTAACCTCGAACCCACTAGCAGCAAAGTCTGGAGTTCAATTCCAAG
CAAAGGTGATTTTTTTGCGACTTTGC back to top Coding sequence (CDS) from alignment at C-linearis_contig96:60630..63655-
>mRNA_C-linearis_contig96.17015.1 ID=mRNA_C-linearis_contig96.17015.1|Name=mRNA_C-linearis_contig96.17015.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at C-linearis_contig96:60630..63655- (Chordaria linearis ClinC8C monoicous) ATGAAAGGAGGTGCCAAGGTTGTAGTGGAGCCGCATAGGCACGAGGGCGT TTTCATCGCAAGAGGAAAGGAGGACGCGCTTTGCACTCTCAACAGTGCTC CCGGCAAGATGAAAGGAGGTGCCAAGGTTGTAGTGGAGCCGCATAGGCAC GAGGGCGTTTTCATCGCAAGAGGAAAGGAGGACGCGCTTTGCACTCTCAA CAGTGCTCCCGGCAAGGCTGTGTACGGGGAGAAGCTGATATCGGTGGAGG CCCCACCAAGCGAGGATGGCACAACGTCGAAGATCGAGTACCGCGTGTGG AATCCCTTCCGGTCCAAGCTTGCGGCTGCCATTCTCGGAGGAGTCGACGG TATCCACATTGTGCCGGGCGCGAAGGCTGTGTACGGGGAGAAGCTGATAT CGGTGGAGGCCCCACCAAGCGAGGATGGCACAACGTCGAAGATCGAGTAC CGCGTGTGGAATCCCTTCCGGTCCAAGCTTGCGGCTGCCATTCTCGGAGG AGTCGACGGTATCCACATTGTGCCGGGCGCGAAGGTGCTCTACCTTGGTG CAGCTGCCGGTACGACCGTGTCGCATGTTGCGGACATCGTAGGGCCTGCG GGGTGTGTGTACGCGGTGGAGTTTGCTCACCGGCCCGGGCGAGACCTCAT CAACATGGCCAAGTCGCGCACCAACGTGATCCCCATCATTGAGGATGCAC GACACCCCCTAAAGTACCGGATGCTTGTGGGCATGGTGGACACCGTTTTC GCCGACGTTGCCCAGCCGGATCAGGTGCTCTACCTTGGTGCAGCTGCCGG TACGACCGTGTCGCATGTTGCGGACATCGTAGGGCCTGCGGGGTGTGTGT ACGCGGTGGAGTTTGCTCACCGGCCCGGGCGAGACCTCATCAACATGGCC AAGTCGCGCACCAACGTGATCCCCATCATTGAGGATGCACGACACCCCCT AAAGTACCGGATGCTTGTGGGCATGGTGGACACCGTTTTCGCCGACGTTG CCCAGCCGGATCAGGCACGCATCGTGGCGCTGAACTCGCACTATTTCCTC AAAAATGGAGGGCACTGCGTCATTTCGATCAAGGCGTCATGCGTCGACTC GACGGCATCACCGGAGGCTGTGTTCGCCCAGGAGGCACGCATCGTGGCGC TGAACTCGCACTATTTCCTCAAAAATGGAGGGCACTGCGTCATTTCGATC AAGGCGTCATGCGTCGACTCGACGGCATCACCGGAGGCTGTGTTCGCCCA GGAGGTTTCCAAGCTGAAGACGGAAAACTTCAAGCCCAAGGAGCAAGTAA CCCTAGAGCCCTACGAGCGTGACCACGCAGTAGTTGTTGCGCTGTACCGC CCTGCGAAGAAGAAATCGAAAGACACATGAGTTTCCAAGCTGAAGACGGA AAACTTCAAGCCCAAGGAGCAAGTAACCCTAGAGCCCTACGAGCGTGACC ACGCAGTAGTTGTTGCGCTGTACCGCCCTGCGAAGAAGAAATCGAAAGAC ACATGA back to top