mRNA_C-linearis_contig96.17015.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: D7G473_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G473_ECTSI) HSP 1 Score: 479 bits (1232), Expect = 3.480e-169 Identity = 241/246 (97.97%), Postives = 244/246 (99.19%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKK-KSKD 816 AKVVVEPHRHEGVFIARGKEDALCTLNS+PGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGP+GCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVV+ALYRP KK KSKD Sbjct: 5 AKVVVEPHRHEGVFIARGKEDALCTLNSSPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPSGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVIALYRPPKKSKSKD 250
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: A0A835Z838_9STRA (Fibrillarin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z838_9STRA) HSP 1 Score: 432 bits (1111), Expect = 8.290e-151 Identity = 213/243 (87.65%), Postives = 227/243 (93.42%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKS 810 AKVVVEPHRHEGVFIAR KEDALCTLNS PGKAVYGEKLISV+ PP+ DG T+KIEYRVWNPFRSK+AAAILGG + I + PG+KVLYLGAAAGT+VSHV+DIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVD VFADVAQPDQARIVALNSHYFLKNGGHCVIS+KASCVDSTA+PEAVFAQEVSKL++E FKP EQ+TLEPYERDHAVVVA YR AKK Sbjct: 5 AKVVVEPHRHEGVFIARSKEDALCTLNSTPGKAVYGEKLISVDGPPTADGATTKIEYRVWNPFRSKIAAAILGGTENIWMAPGSKVLYLGAAAGTSVSHVSDIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDCVFADVAQPDQARIVALNSHYFLKNGGHCVISVKASCVDSTAAPEAVFAQEVSKLRSEGFKPLEQLTLEPYERDHAVVVAEYRAAKKSK 247
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: B8CBC2_THAPS (Uncharacterized protein n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CBC2_THAPS) HSP 1 Score: 414 bits (1065), Expect = 6.330e-143 Identity = 201/245 (82.04%), Postives = 224/245 (91.43%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSKD 816 +KVV+EPHRHEGVFIARGKEDAL TLNS PG AVYGEK ISVE PP DG T+K+EYRVWNPFRSK+AAAILGGVD I I PG+KVLYLGAAAGT+VSHV+DIVGP G VYAVEF+HRPGRDL+N+AK+RTNVIPIIEDARHPLKYRMLVGMVD VFAD+AQPDQARIVALNSHYFLKNGGH VI+IKASC+DSTA+PEAVF +EVSKL++ENFKP EQ+TLEPYERDH V++A YRP+KKK D Sbjct: 59 SKVVIEPHRHEGVFIARGKEDALVTLNSTPGVAVYGEKRISVETPPGPDGNTTKVEYRVWNPFRSKIAAAILGGVDNIWIKPGSKVLYLGAAAGTSVSHVSDIVGPKGAVYAVEFSHRPGRDLLNVAKARTNVIPIIEDARHPLKYRMLVGMVDCVFADIAQPDQARIVALNSHYFLKNGGHSVIAIKASCIDSTAAPEAVFRREVSKLQSENFKPLEQLTLEPYERDHCVLIAQYRPSKKKKSD 303
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: A0A6S9GIT5_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GIT5_HETAK) HSP 1 Score: 412 bits (1058), Expect = 1.040e-142 Identity = 202/243 (83.13%), Postives = 219/243 (90.12%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKS 810 AKV++EPHRHEGVFIARGKEDAL TLNS PGK VYGEK + V+ PP DG T+K+EYRVWNPFRSKLAAAILGGVD I + PG+KV+YLGAAAGTTVSHV+DIVGP G VYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVD VFADVAQPDQARIVALNSHYFLKNGGH V+SIKASC+DSTAS EAVFA+EV KL+ E F+P+EQ+TLEPYERDHAVVVA YR KKK Sbjct: 5 AKVIIEPHRHEGVFIARGKEDALVTLNSTPGKDVYGEKRVQVDGPPGPDGNTTKLEYRVWNPFRSKLAAAILGGVDNIWMKPGSKVMYLGAAAGTTVSHVSDIVGPTGAVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDCVFADVAQPDQARIVALNSHYFLKNGGHAVVSIKASCIDSTASAEAVFAREVKKLQDEQFRPQEQLTLEPYERDHAVVVATYRQPKKKK 247
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: A0A7S2UWV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWV2_9STRA) HSP 1 Score: 412 bits (1060), Expect = 1.210e-142 Identity = 204/243 (83.95%), Postives = 217/243 (89.30%), Query Frame = 1 Query: 85 KVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSK 813 KVV+EPHRHEGVFIAR KEDAL TLNS PGK VYGEK I V+ PP DG T+KIEYRVWNPFRSKLAAA+LGGVD I + PGAKVLYLGAAAGTTVSHV+DIVGP G VYAVEFAHRPGRDLINMAK+RTNVIPIIEDARHPLKYRMLV MVDT+FADVAQPDQARIVALN+HYFLKNGGH VISIKASC+DSTA PEAVFA+EV KL+TE FKP EQ+TLEPYERDHAVVV YRP KK K Sbjct: 28 KVVIEPHRHEGVFIARSKEDALVTLNSTPGKDVYGEKRIQVDGPPGPDGNTTKIEYRVWNPFRSKLAAAVLGGVDNIWMAPGAKVLYLGAAAGTTVSHVSDIVGPQGAVYAVEFAHRPGRDLINMAKARTNVIPIIEDARHPLKYRMLVPMVDTIFADVAQPDQARIVALNAHYFLKNGGHFVISIKASCIDSTAPPEAVFAREVKKLQTEQFKPAEQLTLEPYERDHAVVVGAYRPPKKAKK 270
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: A0A7S0CDH6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDH6_9STRA) HSP 1 Score: 413 bits (1062), Expect = 4.360e-142 Identity = 201/244 (82.38%), Postives = 221/244 (90.57%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSK 813 AKV+VEPHRHEG+F+ARGKEDAL TLNS PG AVYGEK ISV+ PP DG +K+EYRVWNPFRSKLAAA+LGGVD I I PG KVLYLGAAAGT+VSHV+DIVGP G VYAVEF+HRPGRDLINMAKSRTNVIPIIEDARHPLKYRML+GMVDTVFADVAQPDQARIVALNS YFLKN GHCVIS+KASC+DSTA+PEAVF +EVSKL+ ENF+P EQ+TLEPYERDHAVV+A +RP KKK K Sbjct: 82 AKVIVEPHRHEGIFVARGKEDALVTLNSTPGAAVYGEKRISVDGPPGADGNATKVEYRVWNPFRSKLAAAVLGGVDNIWIKPGYKVLYLGAAAGTSVSHVSDIVGPTGSVYAVEFSHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLIGMVDTVFADVAQPDQARIVALNSSYFLKNKGHCVISVKASCIDSTAAPEAVFRREVSKLQAENFRPLEQLTLEPYERDHAVVIAQFRPDKKKKK 325
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: A0A8J2T0A1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T0A1_9STRA) HSP 1 Score: 408 bits (1048), Expect = 1.770e-140 Identity = 202/241 (83.82%), Postives = 218/241 (90.46%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKK 804 AKVVVEPHRHEGVFIARGKED + TLNS PGK VYGEK ISV+ P +EDGTT+KIEYRVWNPFRSKL AAILGGVD IH+ PG+KVLYLG AAGTTVSHV+D+VGP GCVYAVEF+HRPGRDLINMAK RTNVIPIIEDARHPLKYRMLVGMVD VFADVAQPDQARIVALNS YFLK GG V+SIKASC+DSTA+PEAVFA EV+KL+ + FKPKEQ+TLEPYERDHAVVV LYRP KK Sbjct: 55 AKVVVEPHRHEGVFIARGKEDVIVTLNSTPGKDVYGEKRISVDGPANEDGTTTKIEYRVWNPFRSKLCAAILGGVDTIHMKPGSKVLYLGGAAGTTVSHVSDLVGPQGCVYAVEFSHRPGRDLINMAKHRTNVIPIIEDARHPLKYRMLVGMVDCVFADVAQPDQARIVALNSQYFLKAGGGFVVSIKASCIDSTATPEAVFAAEVAKLQKDQFKPKEQLTLEPYERDHAVVVGLYRPPKK 295
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: A0A7S2KUE1_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KUE1_9STRA) HSP 1 Score: 409 bits (1051), Expect = 1.910e-140 Identity = 201/243 (82.72%), Postives = 220/243 (90.53%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKS 810 AKVV+EPHRHEGVFIARGKEDAL TLNS PG AVYGEK ISVE+PP DG + K+EYRVWNPFRSK+AAAILGGVD I I PG+KVLYLGAAAGT+VSHV+DIVGP G VYAVEF+HRPGRDL+N+AK RTNVIPIIEDARHPLKYRMLVGMVD VFADVAQPDQARIVALNSHYFLKNGGH VISIKASC+DSTA+PEAVF +EVSKL +ENFKP EQ+TLEPYERDH V+++ YRP KKK Sbjct: 82 AKVVIEPHRHEGVFIARGKEDALVTLNSTPGVAVYGEKRISVESPPGPDGNSVKVEYRVWNPFRSKIAAAILGGVDNIWIKPGSKVLYLGAAAGTSVSHVSDIVGPKGNVYAVEFSHRPGRDLLNVAKGRTNVIPIIEDARHPLKYRMLVGMVDVVFADVAQPDQARIVALNSHYFLKNGGHSVISIKASCIDSTAAPEAVFRREVSKLTSENFKPLEQLTLEPYERDHCVLISQYRPTKKKK 324
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: I2CQX8_NANGC (rRNA 2'-O-methyltransferase fibrillarin (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CQX8_NANGC) HSP 1 Score: 406 bits (1043), Expect = 2.210e-140 Identity = 199/244 (81.56%), Postives = 217/244 (88.93%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTSKIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKKSK 813 AKV++E HRHEGVFIAR KEDAL TLNS PGK VYGEK I VE PP +G +K+EYRVWNPFRSKLAAAILGGVD I + PG+KVLYLGAA+GTTVSHV+DIVGP GCVYAVEF+HRPGRDLINMAK RTNVIPI+EDARHPLKYRMLVGMVDT+FADVAQPDQARIV+LNSHYFLKNGGH VISIKASC+DSTA+PEAVF +EV KL+ E FKP EQ+TLEPYERDHAVVVA YRPA K K Sbjct: 9 AKVIIEAHRHEGVFIARSKEDALVTLNSTPGKDVYGEKRIQVEGPPGPEGVATKLEYRVWNPFRSKLAAAILGGVDHIWMKPGSKVLYLGAASGTTVSHVSDIVGPTGCVYAVEFSHRPGRDLINMAKLRTNVIPIVEDARHPLKYRMLVGMVDTIFADVAQPDQARIVSLNSHYFLKNGGHVVISIKASCIDSTAAPEAVFQKEVKKLQEEKFKPLEQLTLEPYERDHAVVVATYRPAPKTKK 252
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Match: A0A1Z5KF33_FISSO (rRNA 2'-O-methyltransferase fibrillarin n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KF33_FISSO) HSP 1 Score: 407 bits (1046), Expect = 6.960e-140 Identity = 200/243 (82.30%), Postives = 221/243 (90.95%), Query Frame = 1 Query: 82 AKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPSEDGTTS-KIEYRVWNPFRSKLAAAILGGVDGIHIVPGAKVLYLGAAAGTTVSHVADIVGPAGCVYAVEFAHRPGRDLINMAKSRTNVIPIIEDARHPLKYRMLVGMVDTVFADVAQPDQARIVALNSHYFLKNGGHCVISIKASCVDSTASPEAVFAQEVSKLKTENFKPKEQVTLEPYERDHAVVVALYRPAKKK 807 AKV+VEPHRHEGVF+ARGKEDAL TLNS PG AVYGEK ISVE PP + T + K+EYRVWNPFRSKLAAA+LGGVD I I PG+KVLY+GAAAGT+VSHV+DIVGP G VYAVEF+HRPGRDL++MAK RTNVIPIIEDARHPLKYRML+GMVDTVFADVAQPDQARIVALNSHYFLKNGGH VI++KASC+DSTASPEAVFA+EV KL+ ENFKP EQ+TLEPYERDHAVV+A YRP KKK Sbjct: 72 AKVIVEPHRHEGVFVARGKEDALVTLNSTPGIAVYGEKRISVEVPPKDGETVAQKVEYRVWNPFRSKLAAAVLGGVDNIWIAPGSKVLYIGAAAGTSVSHVSDIVGPQGAVYAVEFSHRPGRDLLSMAKQRTNVIPIIEDARHPLKYRMLIGMVDTVFADVAQPDQARIVALNSHYFLKNGGHAVIAVKASCIDSTASPEAVFAREVQKLQAENFKPLEQLTLEPYERDHAVVIAEYRPNKKK 314 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig96.17015.1 >prot_C-linearis_contig96.17015.1 ID=prot_C-linearis_contig96.17015.1|Name=mRNA_C-linearis_contig96.17015.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=251bp MKGGAKVVVEPHRHEGVFIARGKEDALCTLNSAPGKAVYGEKLISVEAPPback to top mRNA from alignment at C-linearis_contig96:60630..63655- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig96.17015.1 ID=mRNA_C-linearis_contig96.17015.1|Name=mRNA_C-linearis_contig96.17015.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=3026bp|location=Sequence derived from alignment at C-linearis_contig96:60630..63655- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig96:60630..63655- >mRNA_C-linearis_contig96.17015.1 ID=mRNA_C-linearis_contig96.17015.1|Name=mRNA_C-linearis_contig96.17015.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at C-linearis_contig96:60630..63655- (Chordaria linearis ClinC8C monoicous)back to top |