mRNA_C-linearis_contig96.17008.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-linearis_contig96.17008.1
Unique NamemRNA_C-linearis_contig96.17008.1
TypemRNA
OrganismChordaria linearis ClinC8C monoicous (Chordaria linearis ClinC8C monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig96.17008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-linearis_contig96contigC-linearis_contig96:41..355 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Chordaria linearis ClinC8C monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size188
Cds size159
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-linearis_contig96.17008.1prot_C-linearis_contig96.17008.1Chordaria linearis ClinC8C monoicouspolypeptideC-linearis_contig96 69..355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.2026012-UTR-C-linearis_contig96:40..681622930818.2026012-UTR-C-linearis_contig96:40..68Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 41..68 -
1690881265.7457256-UTR-C-linearis_contig96:40..681690881265.7457256-UTR-C-linearis_contig96:40..68Chordaria linearis ClinC8C monoicousUTRC-linearis_contig96 41..68 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930818.2176726-CDS-C-linearis_contig96:68..741622930818.2176726-CDS-C-linearis_contig96:68..74Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 69..74 -
1690881265.757928-CDS-C-linearis_contig96:68..741690881265.757928-CDS-C-linearis_contig96:68..74Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 69..74 -
1622930818.228892-CDS-C-linearis_contig96:202..3551622930818.228892-CDS-C-linearis_contig96:202..355Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 203..355 -
1690881265.7679522-CDS-C-linearis_contig96:202..3551690881265.7679522-CDS-C-linearis_contig96:202..355Chordaria linearis ClinC8C monoicousCDSC-linearis_contig96 203..355 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-linearis_contig96.17008.1

>prot_C-linearis_contig96.17008.1 ID=prot_C-linearis_contig96.17008.1|Name=mRNA_C-linearis_contig96.17008.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=53bp
PGGGSRRERRRRDKGVKDADAHDIFEGANVGARVTASTAADSAVNHEAQL
RV*
back to top

mRNA from alignment at C-linearis_contig96:41..355-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig96.17008.1 ID=mRNA_C-linearis_contig96.17008.1|Name=mRNA_C-linearis_contig96.17008.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=315bp|location=Sequence derived from alignment at C-linearis_contig96:41..355- (Chordaria linearis ClinC8C monoicous)
CCGGGCGGAGGCAGCAGGAGGGAGCGGCGAAGGAGAGACAAGGGCGTGAA
GGACGCCGATGCCCACGACATATTCGAAGGGGCCAATGTCGGCGCCCGGG
TCACGGCCTCCACCGCCGCCGACTCTGCGGTGAACCATGAAGCGCAACTC
AGGGTGAGGGGGAAGGCAGCGTGGGTGAAGCCCAAGAGCACTGGCAGGTT
GTTTCGTTTGTGGTTTCAACCACTTGACATCCTATAACCCAGCCCCGGCC
TCCGTTCTACCCATCATGTTGTCCGCCGCAGGTCTAGCCAAGCCGGGCAT
TCTTTCGCTAGCCAG
back to top

Coding sequence (CDS) from alignment at C-linearis_contig96:41..355-

>mRNA_C-linearis_contig96.17008.1 ID=mRNA_C-linearis_contig96.17008.1|Name=mRNA_C-linearis_contig96.17008.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at C-linearis_contig96:41..355- (Chordaria linearis ClinC8C monoicous)
CCGGGCGGAGGCAGCAGGAGGGAGCGGCGAAGGAGAGACAAGGGCGTGAA
GGACGCCGATGCCCACGACATATTCGAAGGGGCCAATGTCGGCGCCCGGG
TCACGGCCTCCACCGCCGCCGACTCTGCGGTGAACCATGAAGCGCAACTC
AGGCCGGGCGGAGGCAGCAGGAGGGAGCGGCGAAGGAGAGACAAGGGCGT
GAAGGACGCCGATGCCCACGACATATTCGAAGGGGCCAATGTCGGCGCCC
GGGTCACGGCCTCCACCGCCGCCGACTCTGCGGTGAACCATGAAGCGCAA
CTCAGGGTCTAGGTCTAG
back to top