mRNA_C-linearis_contig95.17001.1 (mRNA) Chordaria linearis ClinC8C monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	5
Model size	1292
Cds size	1290
Stop	0
Start	0

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_C-linearis_contig95.17001.1	prot_C-linearis_contig95.17001.1	Chordaria linearis ClinC8C monoicous	polypeptide	C-linearis_contig95 501011..503812 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930808.8894243-CDS-C-linearis_contig95:501010..501379	1622930808.8894243-CDS-C-linearis_contig95:501010..501379	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 501011..501379 -
1690881260.9675083-CDS-C-linearis_contig95:501010..501379	1690881260.9675083-CDS-C-linearis_contig95:501010..501379	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 501011..501379 -
1622930808.903203-CDS-C-linearis_contig95:501520..502106	1622930808.903203-CDS-C-linearis_contig95:501520..502106	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 501521..502106 -
1690881260.9781384-CDS-C-linearis_contig95:501520..502106	1690881260.9781384-CDS-C-linearis_contig95:501520..502106	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 501521..502106 -
1622930808.9169762-CDS-C-linearis_contig95:502289..502415	1622930808.9169762-CDS-C-linearis_contig95:502289..502415	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 502290..502415 -
1690881260.9879298-CDS-C-linearis_contig95:502289..502415	1690881260.9879298-CDS-C-linearis_contig95:502289..502415	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 502290..502415 -
1622930808.9306955-CDS-C-linearis_contig95:503116..503281	1622930808.9306955-CDS-C-linearis_contig95:503116..503281	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 503117..503281 -
1690881260.9977949-CDS-C-linearis_contig95:503116..503281	1690881260.9977949-CDS-C-linearis_contig95:503116..503281	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 503117..503281 -
1622930808.944906-CDS-C-linearis_contig95:503768..503812	1622930808.944906-CDS-C-linearis_contig95:503768..503812	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 503769..503812 -
1690881261.0152571-CDS-C-linearis_contig95:503768..503812	1690881261.0152571-CDS-C-linearis_contig95:503768..503812	Chordaria linearis ClinC8C monoicous	CDS	C-linearis_contig95 503769..503812 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at C-linearis_contig95:501009..503812-
coding sequence from alignment at C-linearis_contig95:501009..503812-

protein sequence of mRNA_C-linearis_contig95.17001.1

>prot_C-linearis_contig95.17001.1 ID=prot_C-linearis_contig95.17001.1|Name=mRNA_C-linearis_contig95.17001.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=430bp
PWRAGASSRAWAESRRVTDESRRPGSSLQGGEVGGACNLVKEYARAAVER
IVRRACLNLANRPWRLAGVRLSIDRSNHAGRRQRMLRARTSKDGPMAALV
ELQAAHGNLANNGTELCGWARRRGCKPRHRRLMRPRTPSDDSRRLGSTRP
SPPPFPHRRHPSSAGWGRDEVGRRHEGDKNYDDSCCPQYILYGTYEACQE
SPWSEGRQGWISQAEDAKDVDVSNGVSAEGVPPSFRRKLGVQLPPQPCRT
IGYRPRGTSCLNRATGKVTRQGGRALNLANGRSTNCQLPQRPRWDARFWV
RARDFPAATTSTWETRNPSSQRVVSEQGVGPRVHVPAVGENDMPTDNAST
TTTTSGGGYSASTFVDETVSSSSLATFSSSLGEETWSEVSVTADDSSAAR
GSPLDQLQEAAGEEAAPATRGQAGDGDAWH

mRNA from alignment at C-linearis_contig95:501009..503812-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_C-linearis_contig95.17001.1 ID=mRNA_C-linearis_contig95.17001.1|Name=mRNA_C-linearis_contig95.17001.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=2804bp|location=Sequence derived from alignment at C-linearis_contig95:501009..503812- (Chordaria linearis ClinC8C monoicous)
CCCTGGCGCGCCGGGGCATCGTCGAGAGCATGGGCGGAAAGCAGGTGCGC
TGGCCATTAAGCGTCGTATCTATCTTCCAAACATACGTTGGGGCATATCC
GGACAGAGGTGCGCCGTACACAGCGACACCCATCTCTCGCTACGTAGTAA
AAAAAAAGTCCGGTGGACCCATACCGGAGTCATGGGGGTCAGAATTCCCC
GCTCTTGGGGGGCGGAATGTTCGCCTGTCCGGAAGGCTGCCACCGAGGCT
CGAGGTTCGGGTTCGGCGAAAACGCCCCCCTCTGTGTTGGCCCCGGAGGA
ACCGCTCGGAGGGCGCGGTGTTTTCAAGACTCTTTGTCGCGGGCTCTCCC
AAACATCGAGGTTTGTTTTGCTGTACTCGTGGCAACCCCCCGCATTTCGC
CGAGTTGACCCTGGGGGGGTATTCATCGACCCCAATTTGAGGAGAGGCAC
TCGTGGTCGCGCGAGAACGTACGGTGGTTGCACTACATAAAGTATCCCGT
AACTTTCTCGTGATTCATGGACCACCTGTAGGCGAGTGACAGACGAGTCG
CGGCGGCCTGGAAGCAGCTTACAAGGCGGAGAGGTCGGTGGGGCTTGCAA
CCTCGTCAAGGAATATGCCAGGGCCGCGGTAGAGCGGATTGTTCGGCGAG
CTTGTCTGAATCTTGCCAATCGGCCTTGGAGACTTGCCGGAGTGAGGTGG
GGCTCCATTCTTCATTTTTGGTTCTCGATTAAGTTGGGCTGCGGTTGGGG
TAGTCTGGCGATTTGTTTCATTCTGGATGATGACAGCTAAGAAGTACTAA
CATTGCCTGATATGTTTTTTTGTTTTGTTTTTCTCGCCCATTAATGTTTT
TTCGTAGCCTGCCTCCTCCTCTTCATTACAACTAGCTAGGCTACCATCCG
AGGTCACACAGGAGGGGATGTTTCCACCTACCTCCTGCGGTGCATGCCTT
TGATGCTTTTTATCGCGAGCAGGGTTCAGCGGTCCCCACCCTCGTCAACA
ATGAAGTCGAAAGTAGTATTTACTAACAAGCTTGCAGCAAGTTTTCAATG
TACCAGGAACGAAAGTGAGAAAAAAACTAACTTCGTCGGGGCTTGAAGCC
ATGACCTGGCGCTTCTAGTAGACTGCGTGGGTGTCCACTAGACCACCGGG
GCGACCGGCATTATGTCGTCCGGCGTAGAACAATGTTTCACCTAATGAAC
TTATCTGGACACTTCACTCGGCAAAGGAATGCGACCAAAACCCTTTGATC
TATGCGCTCAAGGGCTTCATGAGGAACCGGGTACTCCGCGTTCCTTCCCT
TCAGTTCTGAAACGAGTCGGCCCATGGTTCTGCGAGGCACTGTATGCGAC
GGCTTGACAACGGGCCCTCGTTCTGTTGATGACGTATGCACACCCAGGCT
TTCTATAGACCGCAGCAACCACGCTGGTAGGCGACAACGAATGCTGCGCG
CAAGGACCAGCAAGGATGGTCCTATGGCCGCACTCGTCGAACTGCAAGCG
GCACACGGGAACCTGGCAAACAAGTACGTACGTGATTGGCAACAGCCATA
GACCCGCCACCGCACGTTTCAACCTGACATACAACGCATTGCTTGAATAC
ACCAAAATTCAGGCCCATCCTTAGTAGAGACAACCGAAGACCTTATCGAG
CGCACTGCTGTTCTTGCTCATCGCAACGGCGAACTTGTCGCATTTTCAAC
CCTCAGTGGCACGGAGCTCTGTGGATGGGCACGGCGGCGTGGCTGTAAGC
CGCGTCATCGCCGCCTCATGCGCCCCCGCACACCCTCCGATGACAGCCGA
CGTTTGGGCTCGACAAGGCCGTCGCCTCCGCCATTCCCGCACCGTCGGCA
TCCTTCATCCGCAGGTTGGGGACGTGATGAAGTCGGCAGGAGGCATGAAG
GCGACAAGAATTACGACGACTCCTGCTGCCCACAATACATCCTATACGGC
ACTTATGAGGCGTGTCAGGAAAGTCCGTGGTCCGAGGGTAGACAAGGATG
GATCTCTCAGGCCGAGGACGCTAAGGACGTGGATGTTTCGAACGGTGTCT
CAGCAGAAGGAGTCCCGCCCAGCTTTCGGCGTAAGCTTGGTGTCCAACTC
CCCCCGCAACCATGCCGGACGATCGGCTACCGTCCTCGAGGCACATCATG
TCTTAACCGAGCTACAGGGAAAGTTACACGGCAGGGTGGACGCGCTCTCA
ACCTTGCTAATGGCCGTTCAACAAATTGTCAGCTTCCACAGCGGCCACGC
TGGGACGCAAGGTTCTGGGTACGAGCTCGAGATTTTCCGGCGGTAAGAAT
GCGTGAATGAGGTGCAAGAGCGCATACTATGGTACTTTAATGGTGGGACG
TTTCTCCTTCGCATGCTTCGAGCGCGTGCTCGTGCCTCGCTTCACATCTT
CGAACGTGCCTCGTTGCCACACATACCTTACAGGCAACAACCTCGACTTG
GGAAACAAGGAACCCATCGTCGCAACGCGTGGTTTCTGAGCAAGGCGTTG
GCCCCAGGGTGCATGTGCCTGCCGTGGGAGAGAATGACATGCCCACGGAT
AACGCCTCCACCACCACCACCACCTCAGGCGGAGGGTACAGCGCGAGCAC
CTTTGTTGACGAAACCGTGTCGTCTTCCAGCCTCGCTACGTTCAGCTCAA
GCCTCGGTGAAGAAACCTGGAGTGAGGTCAGCGTCACAGCTGATGATTCG
TCGGCAGCAAGAGGTTCTCCCTTGGACCAGCTCCAAGAAGCGGCAGGGGA
GGAGGCGGCGCCTGCCACGAGGGGGCAGGCAGGTGACGGAGATGCTTGGC
ATGC

Coding sequence (CDS) from alignment at C-linearis_contig95:501009..503812-

>mRNA_C-linearis_contig95.17001.1 ID=mRNA_C-linearis_contig95.17001.1|Name=mRNA_C-linearis_contig95.17001.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=2580bp|location=Sequence derived from alignment at C-linearis_contig95:501009..503812- (Chordaria linearis ClinC8C monoicous)
CCCTGGCGCGCCGGGGCATCGTCGAGAGCATGGGCGGAAAGCAGCCCTGG
CGCGCCGGGGCATCGTCGAGAGCATGGGCGGAAAGCAGGCGAGTGACAGA
CGAGTCGCGGCGGCCTGGAAGCAGCTTACAAGGCGGAGAGGTCGGTGGGG
CTTGCAACCTCGTCAAGGAATATGCCAGGGCCGCGGTAGAGCGGATTGTT
CGGCGAGCTTGTCTGAATCTTGCCAATCGGCCTTGGAGACTTGCCGGAGT
GAGGCGAGTGACAGACGAGTCGCGGCGGCCTGGAAGCAGCTTACAAGGCG
GAGAGGTCGGTGGGGCTTGCAACCTCGTCAAGGAATATGCCAGGGCCGCG
GTAGAGCGGATTGTTCGGCGAGCTTGTCTGAATCTTGCCAATCGGCCTTG
GAGACTTGCCGGAGTGAGGCTTTCTATAGACCGCAGCAACCACGCTGGTA
GGCGACAACGAATGCTGCGCGCAAGGACCAGCAAGGATGGTCCTATGGCC
GCACTCGTCGAACTGCAAGCGGCACACGGGAACCTGGCAAACAAGCTTTC
TATAGACCGCAGCAACCACGCTGGTAGGCGACAACGAATGCTGCGCGCAA
GGACCAGCAAGGATGGTCCTATGGCCGCACTCGTCGAACTGCAAGCGGCA
CACGGGAACCTGGCAAACAATGGCACGGAGCTCTGTGGATGGGCACGGCG
GCGTGGCTGTAAGCCGCGTCATCGCCGCCTCATGCGCCCCCGCACACCCT
CCGATGACAGCCGACGTTTGGGCTCGACAAGGCCGTCGCCTCCGCCATTC
CCGCACCGTCGGCATCCTTCATCCGCAGGTTGGGGACGTGATGAAGTCGG
CAGGAGGCATGAAGGCGACAAGAATTACGACGACTCCTGCTGCCCACAAT
ACATCCTATACGGCACTTATGAGGCGTGTCAGGAAAGTCCGTGGTCCGAG
GGTAGACAAGGATGGATCTCTCAGGCCGAGGACGCTAAGGACGTGGATGT
TTCGAACGGTGTCTCAGCAGAAGGAGTCCCGCCCAGCTTTCGGCGTAAGC
TTGGTGTCCAACTCCCCCCGCAACCATGCCGGACGATCGGCTACCGTCCT
CGAGGCACATCATGTCTTAACCGAGCTACAGGGAAAGTTACACGGCAGGG
TGGACGCGCTCTCAACCTTGCTAATGGCCGTTCAACAAATTGTCAGCTTC
CACAGCGGCCACGCTGGGACGCAAGGTTCTGGGTACGAGCTCGAGATTTT
CCGGCGTGGCACGGAGCTCTGTGGATGGGCACGGCGGCGTGGCTGTAAGC
CGCGTCATCGCCGCCTCATGCGCCCCCGCACACCCTCCGATGACAGCCGA
CGTTTGGGCTCGACAAGGCCGTCGCCTCCGCCATTCCCGCACCGTCGGCA
TCCTTCATCCGCAGGTTGGGGACGTGATGAAGTCGGCAGGAGGCATGAAG
GCGACAAGAATTACGACGACTCCTGCTGCCCACAATACATCCTATACGGC
ACTTATGAGGCGTGTCAGGAAAGTCCGTGGTCCGAGGGTAGACAAGGATG
GATCTCTCAGGCCGAGGACGCTAAGGACGTGGATGTTTCGAACGGTGTCT
CAGCAGAAGGAGTCCCGCCCAGCTTTCGGCGTAAGCTTGGTGTCCAACTC
CCCCCGCAACCATGCCGGACGATCGGCTACCGTCCTCGAGGCACATCATG
TCTTAACCGAGCTACAGGGAAAGTTACACGGCAGGGTGGACGCGCTCTCA
ACCTTGCTAATGGCCGTTCAACAAATTGTCAGCTTCCACAGCGGCCACGC
TGGGACGCAAGGTTCTGGGTACGAGCTCGAGATTTTCCGGCGGCAACAAC
CTCGACTTGGGAAACAAGGAACCCATCGTCGCAACGCGTGGTTTCTGAGC
AAGGCGTTGGCCCCAGGGTGCATGTGCCTGCCGTGGGAGAGAATGACATG
CCCACGGATAACGCCTCCACCACCACCACCACCTCAGGCGGAGGGTACAG
CGCGAGCACCTTTGTTGACGAAACCGTGTCGTCTTCCAGCCTCGCTACGT
TCAGCTCAAGCCTCGGTGAAGAAACCTGGAGTGAGGTCAGCGTCACAGCT
GATGATTCGTCGGCAGCAAGAGGTTCTCCCTTGGACCAGCTCCAAGAAGC
GGCAGGGGAGGAGGCGGCGCCTGCCACGAGGGGGCAGGCAGGTGACGGAG
ATGCTTGGCATGCAACAACCTCGACTTGGGAAACAAGGAACCCATCGTCG
CAACGCGTGGTTTCTGAGCAAGGCGTTGGCCCCAGGGTGCATGTGCCTGC
CGTGGGAGAGAATGACATGCCCACGGATAACGCCTCCACCACCACCACCA
CCTCAGGCGGAGGGTACAGCGCGAGCACCTTTGTTGACGAAACCGTGTCG
TCTTCCAGCCTCGCTACGTTCAGCTCAAGCCTCGGTGAAGAAACCTGGAG
TGAGGTCAGCGTCACAGCTGATGATTCGTCGGCAGCAAGAGGTTCTCCCT
TGGACCAGCTCCAAGAAGCGGCAGGGGAGGAGGCGGCGCCTGCCACGAGG
GGGCAGGCAGGTGACGGAGATGCTTGGCAT

mRNA_C-linearis_contig95.17001.1 (mRNA) Chordaria linearis ClinC8C monoicous

ZOOM

x 1

POSITION

0