mRNA_C-linearis_contig95.16994.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI) HSP 1 Score: 94.4 bits (233), Expect = 1.050e-19 Identity = 51/88 (57.95%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRAWPPANSAAAADGGAPRGYWGRRAPTRSPVSCNED 265
+ VFYPS+QEIWPELY N++ VEVD+ VEI SDSG EY+Y GPQLKV Y RA PPA++A A PR GRR +R+P+ N D
Sbjct: 459 AGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSG-EYQYVGPQLKVTYLRAAPPADAAEA----TPRPA-GRRTASRAPIPFNSD 540
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 2.900e-16 Identity = 36/59 (61.02%), Postives = 46/59 (77.97%), Query Frame = 2 Query: 2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRAWPPAN 178
S VFYP +QEIWPELY+ N++ VEVD+ +EILSD+ GE+R+ GP LKV Y RA PP +
Sbjct: 191 SRVFYPGMQEIWPELYNTSNIRLVEVDVAIEILSDTCGEFRFVGPHLKVAYRRAIPPVD 249
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: A0A6H5JDQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 6.150e-15 Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = 2 Query: 2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRAWPPANS 181
S VFYPSL+++WPELY +V+AVEVD+ VEILSD G E+RY GP LKV Y R PP ++
Sbjct: 309 SRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGPHLKVGYTRITPPVSA 368
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: D7G7N4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 2.470e-13 Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 2 Query: 2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKV 148
S VFYPSL+E+WPELY +V+AVEVD+ VE+LSD G E+RY GP LKV
Sbjct: 131 SRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGPHLKV 179
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: D8LCK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI) HSP 1 Score: 58.5 bits (140), Expect = 3.360e-7 Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 2 Query: 2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRAWP----PANSAAAA 193
++V +PS+ EIWPE+Y + N++ +EVD+ VE+ S S G Y GP LK+ Y R+ P ++AAAA
Sbjct: 572 AAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRS-SDGNILYTGPTLKITYRRSAARTSAPTDAAAAA 638
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: A0A6H5K0L1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE) HSP 1 Score: 53.1 bits (126), Expect = 2.510e-5 Identity = 23/53 (43.40%), Postives = 39/53 (73.58%), Query Frame = 2 Query: 5 SVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVVYHRA 163
++ YPS+++IWPE+Y +V+ VEVD+ V++ S S G++ + P +KV+Y RA
Sbjct: 523 TITYPSMEDIWPEVYSARSVKVVEVDMTVDVRS-SDGKWVHSWPSVKVMYRRA 574
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Match: A0A6H5JYP1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP1_9PHAE) HSP 1 Score: 52.0 bits (123), Expect = 6.450e-5 Identity = 24/50 (48.00%), Postives = 36/50 (72.00%), Query Frame = 2 Query: 2 SSVFYPSLQEIWPELYDMPNVQAVEVDIEVEILSDSGGEYRYHGPQLKVV 151
++V +PS+ EIWPE+Y + N++ +EVD+ VE+ S S G Y GP LK+V
Sbjct: 709 AAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRS-SEGNILYTGPTLKLV 757 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16994.1 >prot_C-linearis_contig95.16994.1 ID=prot_C-linearis_contig95.16994.1|Name=mRNA_C-linearis_contig95.16994.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=147bp LQCVLPQLARDLAGAVRHAKRPGGGGGHRGRDFIRQRRRVPVPRSPAEGGback to top mRNA from alignment at C-linearis_contig95:415099..416391+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16994.1 ID=mRNA_C-linearis_contig95.16994.1|Name=mRNA_C-linearis_contig95.16994.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=1293bp|location=Sequence derived from alignment at C-linearis_contig95:415099..416391+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:415099..416391+ >mRNA_C-linearis_contig95.16994.1 ID=mRNA_C-linearis_contig95.16994.1|Name=mRNA_C-linearis_contig95.16994.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at C-linearis_contig95:415099..416391+ (Chordaria linearis ClinC8C monoicous)back to top |