Homology
BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Match:
D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI)
HSP 1 Score: 58.2 bits (139), Expect = 2.640e-7
Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1
Query: 214 DRVLPIEEVRVEPSRRECDLEGRPFPVARMTTTNGAPTATRPADDRQCHLVFTGL 378
D LP+E+V +EPSR ECD EGRP P +G P + DRQCHLVFTGL
Sbjct: 367 DGHLPMEKVVIEPSRNECDFEGRPTPPT--DPKSGEPPIPS-STDRQCHLVFTGL 418
BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Match:
D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI)
HSP 1 Score: 53.9 bits (128), Expect = 7.070e-6
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1
Query: 28 QHFGAQEALFGLGPSFPAVQPPLGGQPFK------SENGESSGSFGFGGPDFSAREGSGNSDSADGGGDRVLPIEEVRVEPSRRECDLEGRPFPVARMTTTNGAPTATRPADDRQCHLVFTGLEE 384
QH GA+ + G PS A +PPL P ++G+ SG G S+ S + D+ G LP+ +V VE SR+ECDLEGRP + R+ + TA+ P D R+ H+ FTGLE+
Sbjct: 32 QHVGARVTVSGKRPSSDAAEPPLEIPPHGLGLVGCGDSGDGSGGTASGVDSLSSTPES-SWDAELVGDFGRLPMGDVVVEVSRKECDLEGRP--ITRIGNSLTPITASSP-DVRESHIEFTGLEK 152
The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 2.64e-7 / Id = 54.55 Expect = 7.07e-6 / Id = 37.60 Sequence D7FZ48_ECTSI D7G7N5_ECTSI
Match Name E-value Identity Description
D7FZ48_ECTSI 2.640e-7 54.55 Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G7N5_ECTSI 7.070e-6 37.60 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Hectar predicted targeting category other localisation
Exons 2
Model size 384
Cds size 384
Stop 0
Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622930816.3366568-CDS-C-linearis_contig95:413759..414020 1622930816.3366568-CDS-C-linearis_contig95:413759..414020 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 413760..414020 +
1690881264.721914-CDS-C-linearis_contig95:413759..414020 1690881264.721914-CDS-C-linearis_contig95:413759..414020 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 413760..414020 +
1622930816.3590636-CDS-C-linearis_contig95:414418..414541 1622930816.3590636-CDS-C-linearis_contig95:414418..414541 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 414419..414541 +
1690881264.7318232-CDS-C-linearis_contig95:414418..414541 1690881264.7318232-CDS-C-linearis_contig95:414418..414541 Chordaria linearis ClinC8C monoicous CDS C-linearis_contig95 414419..414541 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16993.1
>prot_C-linearis_contig95.16993.1 ID=prot_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=128bp
HHHEHQHQPQHFGAQEALFGLGPSFPAVQPPLGGQPFKSENGESSGSFGF GGPDFSAREGSGNSDSADGGGDRVLPIEEVRVEPSRRECDLEGRPFPVAR MTTTNGAPTATRPADDRQCHLVFTGLEE back to top mRNA from alignment at C-linearis_contig95:413760..414541+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-linearis_contig95.16993.1 ID=mRNA_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=782bp|location=Sequence derived from alignment at C-linearis_contig95:413760..414541+ (Chordaria linearis ClinC8C monoicous)CACCATCATGAGCACCAGCATCAGCCCCAGCATTTCGGGGCGCAGGAAGC
TCTGTTCGGCCTTGGTCCGTCTTTCCCCGCCGTGCAACCACCACTGGGGG
GTCAACCGTTTAAGTCCGAGAATGGCGAGAGCAGCGGTAGCTTCGGTTTC
GGCGGCCCGGATTTCTCGGCGCGGGAGGGTAGTGGGAACAGTGACTCGGC
CGATGGGGGCGGGGACAGGGTGTTGCCGATAGAGGAGGTCCGGGTGGAGC
CGTCGCGAAGA GTGAGTAAAAACCGCCGCTTGCAAGTTGAACGCCCCTCC
CCTCGTCTCGCTGATGTTGCTGTTGCTGCTGTTGCTGGTATGAACGAACG
GACAGTGTGCTGCCCCCCCCCCGTGCAATCGCGCTGTTGCTGCATATAAA
CCGGAAACATCAAGGAGCTCCGAGCGCGCAACCTGAGCAGTTTTGTTGCT
CGCGTGTCTTCGACCTTCGAACCTCGCGCGGCTTCATCCCCGTCATGCCG
GGGCTTATGCCCTCAACCATGCGACGTCGTGCAGAACACTCAATGGTGGG
AAGCGAGTCACTGCTTAAACACCCCCCCCCTCAAATATCTCGTGCCGTGA
CCCCGAAGAAGTAACCCCAACACACGCATGCTTGCGATTGTATCTTCTCT
GGTTCGCAGGAGTGCGACTTGGAGGGCCGCCCCTTCCCCGTGGCCCGCAT
GACCACCACCAACGGAGCTCCGACCGCCACCCGGCCCGCGGACGACCGGC
AGTGCCACCTCGTCTTCACCGGGCTGGAGGAG back to top Coding sequence (CDS) from alignment at C-linearis_contig95:413760..414541+
>mRNA_C-linearis_contig95.16993.1 ID=mRNA_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at C-linearis_contig95:413760..414541+ (Chordaria linearis ClinC8C monoicous) CACCATCATGAGCACCAGCATCAGCCCCAGCATTTCGGGGCGCAGGAAGC TCTGTTCGGCCTTGGTCCGTCTTTCCCCGCCGTGCAACCACCACTGGGGG GTCAACCGTTTAAGTCCGAGAATGGCGAGAGCAGCGGTAGCTTCGGTTTC GGCGGCCCGGATTTCTCGGCGCGGGAGGGTAGTGGGAACAGTGACTCGGC CGATGGGGGCGGGGACAGGGTGTTGCCGATAGAGGAGGTCCGGGTGGAGC CGTCGCGAAGACACCATCATGAGCACCAGCATCAGCCCCAGCATTTCGGG GCGCAGGAAGCTCTGTTCGGCCTTGGTCCGTCTTTCCCCGCCGTGCAACC ACCACTGGGGGGTCAACCGTTTAAGTCCGAGAATGGCGAGAGCAGCGGTA GCTTCGGTTTCGGCGGCCCGGATTTCTCGGCGCGGGAGGGTAGTGGGAAC AGTGACTCGGCCGATGGGGGCGGGGACAGGGTGTTGCCGATAGAGGAGGT CCGGGTGGAGCCGTCGCGAAGAGAGTGCGACTTGGAGGGCCGCCCCTTCC CCGTGGCCCGCATGACCACCACCAACGGAGCTCCGACCGCCACCCGGCCC GCGGACGACCGGCAGTGCCACCTCGTCTTCACCGGGCTGGAGGAGGAGTG CGACTTGGAGGGCCGCCCCTTCCCCGTGGCCCGCATGACCACCACCAACG GAGCTCCGACCGCCACCCGGCCCGCGGACGACCGGCAGTGCCACCTCGTC TTCACCGGGCTGGAGGAG back to top