mRNA_C-linearis_contig95.16993.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Match: D7FZ48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI) HSP 1 Score: 58.2 bits (139), Expect = 2.640e-7 Identity = 30/55 (54.55%), Postives = 35/55 (63.64%), Query Frame = 1 Query: 214 DRVLPIEEVRVEPSRRECDLEGRPFPVARMTTTNGAPTATRPADDRQCHLVFTGL 378
D LP+E+V +EPSR ECD EGRP P +G P + DRQCHLVFTGL
Sbjct: 367 DGHLPMEKVVIEPSRNECDFEGRPTPPT--DPKSGEPPIPS-STDRQCHLVFTGL 418
BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Match: D7G7N5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N5_ECTSI) HSP 1 Score: 53.9 bits (128), Expect = 7.070e-6 Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 1 Query: 28 QHFGAQEALFGLGPSFPAVQPPLGGQPFK------SENGESSGSFGFGGPDFSAREGSGNSDSADGGGDRVLPIEEVRVEPSRRECDLEGRPFPVARMTTTNGAPTATRPADDRQCHLVFTGLEE 384
QH GA+ + G PS A +PPL P ++G+ SG G S+ S + D+ G LP+ +V VE SR+ECDLEGRP + R+ + TA+ P D R+ H+ FTGLE+
Sbjct: 32 QHVGARVTVSGKRPSSDAAEPPLEIPPHGLGLVGCGDSGDGSGGTASGVDSLSSTPES-SWDAELVGDFGRLPMGDVVVEVSRKECDLEGRP--ITRIGNSLTPITASSP-DVRESHIEFTGLEK 152 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16993.1 >prot_C-linearis_contig95.16993.1 ID=prot_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=128bp HHHEHQHQPQHFGAQEALFGLGPSFPAVQPPLGGQPFKSENGESSGSFGFback to top mRNA from alignment at C-linearis_contig95:413760..414541+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16993.1 ID=mRNA_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=782bp|location=Sequence derived from alignment at C-linearis_contig95:413760..414541+ (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:413760..414541+ >mRNA_C-linearis_contig95.16993.1 ID=mRNA_C-linearis_contig95.16993.1|Name=mRNA_C-linearis_contig95.16993.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at C-linearis_contig95:413760..414541+ (Chordaria linearis ClinC8C monoicous)back to top |