mRNA_C-linearis_contig95.16991.1 (mRNA) Chordaria linearis ClinC8C monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_C-linearis_contig95.16991.1 vs. uniprot
Match: D7G7N8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N8_ECTSI) HSP 1 Score: 213 bits (542), Expect = 1.220e-52 Identity = 106/145 (73.10%), Postives = 124/145 (85.52%), Query Frame = 1 Query: 247 DVGETAGANLHRGLRQPSLLLALLEVARDNDTGSAAQRAAGSALVAFCDCSPGLWKELAKEVLASKGLLEGFLEPASTLALISDHRTQELMFEATYRLWKVWKKQQGGPPALPPSTASEVEEALASITVGDFEGQTRAMLASLNS 681
D+ +TA A LHRGLR+P+LLLAL+ + +DN GS AQRAAGSALVAFCD SPGLWKELAKEV +SK LL+GFL+PAS LA I+DHRTQEL+FEA YRLWKVWKKQ+GGPP LPPST E+ E +SIT+ DFEGQTRAMLA++NS
Sbjct: 11 DLPDTASAELHRGLRRPALLLALVGIVQDNKAGSGAQRAAGSALVAFCDSSPGLWKELAKEVRSSKTLLQGFLKPASMLASIADHRTQELVFEALYRLWKVWKKQRGGPPQLPPSTRREIAEGFSSITIDDFEGQTRAMLAAVNS 155
BLAST of mRNA_C-linearis_contig95.16991.1 vs. uniprot
Match: A0A6H5LAM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAM6_9PHAE) HSP 1 Score: 183 bits (464), Expect = 2.730e-46 Identity = 112/224 (50.00%), Postives = 135/224 (60.27%), Query Frame = 2 Query: 686 EEESCWVAPPSSFPVEALLQATAWEGLGMSQRLGDGKWVDVNGDNIGIQVYPRASPGKSRGTASPSSSTGGSGVFISISAETVKRSSKVLVAKRSLQLDVSFSECPSLARLAHVPLGEVPEGGRCTLILQLGGGARVFSRFRKAIAALVSATPP---------GGVATETSRVVIEKSRFQDFD---------------------TNAKTRPRTTACGLASSKS 1267
E E W++PPSSFPVEALLQ T W GLG+ RLG+ +D+ GD+I IQVYP+ASPGKS GT STGG GVFISI AETV +SKVLV RSLQ+DVS SECP+LARL P E CT+I+QL GG+++F+RFR+AIAAL S P G +T+ S + F+ D TN + RPR ACGLASS S
Sbjct: 191 EGEKGWLSPPSSFPVEALLQVTEWRGLGLRDRLGEAHHLDIGGDSISIQVYPKASPGKSSGT-----STGGGGVFISIPAETVAAASKVLVGARSLQVDVSLSECPALARLVRTPPEENAATANCTVIIQLEGGSQMFNRFRQAIAALKSKVPDVANEAKPSTGSKSTKGSLALEHAEVFKPSDEVEGAEGVEGNLGDDDEEESQTNHRKRPR-AACGLASSVS 408 The following BLAST results are available for this feature:
BLAST of mRNA_C-linearis_contig95.16991.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-linearis_contig95.16991.1 >prot_C-linearis_contig95.16991.1 ID=prot_C-linearis_contig95.16991.1|Name=mRNA_C-linearis_contig95.16991.1|organism=Chordaria linearis ClinC8C monoicous|type=polypeptide|length=889bp MSQRLGDGKWVDVNGDNIGIQVYPRASPGKSRGTASPSSSTGGSGVFISIback to top mRNA from alignment at C-linearis_contig95:373696..386868- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-linearis_contig95.16991.1 ID=mRNA_C-linearis_contig95.16991.1|Name=mRNA_C-linearis_contig95.16991.1|organism=Chordaria linearis ClinC8C monoicous|type=mRNA|length=13173bp|location=Sequence derived from alignment at C-linearis_contig95:373696..386868- (Chordaria linearis ClinC8C monoicous)back to top Coding sequence (CDS) from alignment at C-linearis_contig95:373696..386868- >mRNA_C-linearis_contig95.16991.1 ID=mRNA_C-linearis_contig95.16991.1|Name=mRNA_C-linearis_contig95.16991.1|organism=Chordaria linearis ClinC8C monoicous|type=CDS|length=5334bp|location=Sequence derived from alignment at C-linearis_contig95:373696..386868- (Chordaria linearis ClinC8C monoicous)back to top |